| | gene | name | fitness | t score | description | |
|---|
| b0683 | fur | -5.8 | -5.4 | ferric uptake regulator (NCBI) | compare |
| b0812 | dps | -5.7 | -10.8 | DNA protection during starvation conditions (NCBI) | compare |
| b1105 | ycfM | -5.6 | -6.7 | predicted outer membrane lipoprotein (NCBI) | compare |
| b0149 | mrcB | -5.2 | -24.4 | penicillin-binding protein 1b (NCBI) | compare |
| b3863 | polA | -5.1 | -3.5 | DNA polymerase I (NCBI) | compare |
| b2699 | recA | -4.6 | -4.5 | recombinase A (NCBI) | compare |
| b2830 | nudH | -4.5 | -5.2 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b0092 | ddlB | -4.1 | -9.9 | D-alanylalanine synthetase (NCBI) | compare |
| b2330 | yfcB | -3.5 | -4.7 | putative adenine-specific methylase (VIMSS) | compare |
| b2290 | yfbQ | -3.3 | -16.8 | aspartate aminotransferase (NCBI) | conserved |
| b0053 | surA | -3.2 | -12.7 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b1190 | dadX | -2.8 | -5.7 | alanine racemase (NCBI) | compare |
| b3961 | oxyR | -2.7 | -17.7 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3463 | ftsE | -2.7 | -9.6 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2820 | recB | -2.7 | -5.8 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b1103 | ycfF | -2.7 | -3.6 | orf, hypothetical protein (VIMSS) | compare |
| b0381 | ddlA | -2.6 | -10.7 | D-alanylalanine synthetase (NCBI) | compare |
| b4053 | alr | -2.5 | -12.1 | alanine racemase (NCBI) | compare |
| b0920 | ycbC | -2.5 | -6.9 | conserved inner membrane protein (NCBI) | compare |
| b1634 | tppB | -2.4 | -10.7 | putative tripeptide transporter permease (NCBI) | compare |
| b3405 | ompR | -2.3 | -10.5 | osmolarity response regulator (NCBI) | compare |
| b3792 | wzxE | -2.3 | -11.8 | O-antigen translocase (NCBI) | compare |
| b0889 | lrp | -2.2 | -7.0 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b3163 | nlpI | -2.2 | -8.0 | hypothetical protein (NCBI) | compare |
| b3121 | yhaC | -2.1 | -2.7 | hypothetical protein (NCBI) | compare |
| b0439 | lon | -2.1 | -7.7 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b3462 | ftsX | -2.1 | -8.9 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b4375 | prfC | -2.0 | -11.0 | peptide chain release factor 3 (NCBI) | compare |
| b1830 | prc | -2.0 | -10.9 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b0741 | pal | -2.0 | -6.7 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b0740 | tolB | -2.0 | -8.8 | translocation protein TolB precursor (NCBI) | compare |
| b0500 | ybbD | -2.0 | -3.4 | hypothetical protein (RefSeq) | compare |
| b1499 | ydeO | -2.0 | -3.7 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b3725 | pstB | -2.0 | -5.1 | phosphate transporter subunit (NCBI) | compare |
| b2822 | recC | -2.0 | -6.3 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b0739 | tolA | -1.9 | -8.0 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b0200 | gmhB | -1.9 | -3.2 | hypothetical protein (NCBI) | compare |
| b1863 | ruvC | -1.9 | -5.3 | Holliday junction resolvase (NCBI) | compare |
| b3483 | yhhH | -1.8 | -3.1 | orf, hypothetical protein (VIMSS) | compare |
| b3613 | yibP | -1.7 | -10.0 | putative membrane protein (VIMSS) | compare |
| b3728 | pstS | -1.7 | -7.0 | phosphate transporter subunit (NCBI) | compare |
| b2894 | xerD | -1.7 | -3.5 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b0737 | tolQ | -1.6 | -5.0 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b3162 | deaD | -1.6 | -6.6 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b2392 | mntH | -1.6 | -8.9 | manganese transport protein MntH (NCBI) | compare |
| b0603 | ybdO | -1.5 | -3.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1505 | ydeT | -1.5 | -5.9 | hypothetical protein (RefSeq) | compare |
| b1545 | pinQ | -1.5 | -2.6 | Qin prophage; predicted site-specific recombinase (NCBI) | compare |
| b1749 | xthA | -1.5 | -5.0 | exonuclease III (NCBI) | conserved |
| b4704 | arrS | -1.5 | -3.1 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b2853 | ygeI | -1.4 | -3.5 | hypothetical protein (NCBI) | compare |
| b3390 | aroK | -1.4 | -3.9 | shikimate kinase I (NCBI) | compare |
| b0237 | pepD | -1.4 | -9.3 | aminoacyl-histidine dipeptidase (peptidase D) (NCBI) | compare |
| b1861 | ruvA | -1.4 | -4.4 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b1257 | yciE | -1.4 | -4.3 | hypothetical protein (NCBI) | compare |
| b3442 | yhhZ | -1.3 | -2.4 | hypothetical protein (NCBI) | compare |
| b2379 | yfdZ | -1.3 | -7.8 | hypothetical protein (NCBI) | conserved |
| b1176 | minC | -1.3 | -6.6 | septum formation inhibitor (NCBI) | compare |
| b2297 | pta | -1.3 | -2.9 | phosphate acetyltransferase (NCBI) | compare |
| b4128 | yjdK | -1.3 | -5.5 | hypothetical protein (NCBI) | compare |
| b4497 | yeeL | -1.3 | -4.6 | no description | compare |
| b1693 | aroD | -1.2 | -7.3 | 3-dehydroquinate dehydratase (NCBI) | compare |
| b2847 | yqeI | -1.2 | -6.2 | predicted transcriptional regulator (NCBI) | compare |
| b1347 | ydaC | -1.2 | -1.8 | Rac prophage; predicted protein (NCBI) | compare |
| b0738 | tolR | -1.2 | -4.6 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1175 | minD | -1.2 | -4.9 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b0630 | lipB | -1.2 | -3.1 | protein of lipoate biosynthesis (VIMSS) | compare |
| b3839 | tatC | -1.2 | -8.6 | TatABCE protein translocation system subunit (NCBI) | compare |
| b3813 | uvrD | -1.2 | -9.3 | DNA-dependent ATPase I and helicase II (NCBI) | compare |
| b4171 | miaA | -1.2 | -7.0 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b3652 | recG | -1.2 | -8.7 | ATP-dependent DNA helicase (NCBI) | compare |
| b4253 | yjgL | -1.1 | -5.0 | orf, hypothetical protein (VIMSS) | compare |
| b1497 | b1497 | -1.1 | -3.6 | putative enzyme (VIMSS) | compare |
| b0310 | ykgH | -1.1 | -4.6 | predicted inner membrane protein (NCBI) | compare |
| b4202 | rpsR | -1.1 | -2.7 | 30S ribosomal protein S18 (NCBI) | compare |
| b3512 | GadE | -1.1 | -3.0 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b3281 | aroE | -1.1 | -9.6 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b0145 | dksA | -1.1 | -4.5 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b1409 | ynbB | -1.1 | -4.0 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b3341 | rpsG | -1.1 | -1.9 | 30S ribosomal protein S7 (NCBI) | compare |
| b1095 | fabF | -1.1 | -6.4 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b2110 | yehC | -1.1 | -4.7 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b0232 | yafN | -1.1 | -1.7 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b3404 | envZ | -1.1 | -6.8 | osmolarity sensor protein (NCBI) | compare |
| b4651 | yibW | -1.1 | -1.6 | no description | compare |
| b0114 | aceE | -1.1 | -4.3 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b3205 | yhbJ | -1.1 | -4.7 | hypothetical protein (NCBI) | compare |
| b1323 | tyrR | -1.1 | -6.3 | DNA-binding transcriptional dual regulator, tyrosine-binding (NCBI) | compare |
| b4279 | yjhB | -1.0 | -2.8 | putative transport protein (VIMSS) | compare |
| b3935 | priA | -1.0 | -1.3 | primosome assembly protein PriA (NCBI) | compare |
| b2111 | yehD | -1.0 | -2.3 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0472 | recR | -1.0 | -7.9 | recombination protein RecR (NCBI) | compare |
| b1001 | yccE | -1.0 | -2.7 | hypothetical protein (NCBI) | compare |
| b0726 | sucA | -1.0 | -4.1 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b0890 | ftsK | -1.0 | -6.8 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b0279 | yagM | -1.0 | -4.4 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b0118 | acnB | -1.0 | -3.7 | aconitate hydratase (NCBI) | compare |
| b1097 | yceG | -1.0 | -6.0 | predicted aminodeoxychorismate lyase (NCBI) | compare |
| b1167 | ymgC | -1.0 | -1.6 | hypothetical protein (NCBI) | compare |
| b1814 | sdaA | -1.0 | -4.2 | L-serine deaminase I (NCBI) | compare |
| b2366 | dsdA | -1.0 | -4.9 | D-serine dehydratase (NCBI) | compare |
| b3206 | npr | -1.0 | -3.3 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b0585 | fes | -0.9 | -5.8 | enterobactin/ferric enterobactin esterase (NCBI) | compare |
| b3727 | pstC | -0.9 | -5.0 | phosphate transporter subunit (NCBI) | compare |
| b3504 | yhiS | -0.9 | -2.3 | hypothetical protein (RefSeq) | compare |
| b0303 | ykgI | -0.9 | -2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1058 | yceO | -0.9 | -1.5 | hypothetical protein (NCBI) | compare |
| b4000 | hupA | -0.9 | -5.0 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b2625 | yfjI | -0.9 | -4.0 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b3636 | rpmG | -0.9 | -1.8 | 50S ribosomal protein L33 (NCBI) | compare |
| b1363 | trkG | -0.9 | -3.9 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b3764 | yifE | -0.9 | -5.0 | hypothetical protein (NCBI) | compare |
| b4480 | hdfR | -0.9 | -4.7 | transcriptional regulator HdfR (NCBI) | compare |
| b3120 | yhaB | -0.9 | -2.6 | orf, hypothetical protein (VIMSS) | compare |
| b3027 | ygiZ | -0.9 | -2.0 | conserved inner membrane protein (NCBI) | compare |
| b2829 | ptsP | -0.9 | -7.2 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2055 | wcaE | -0.9 | -3.1 | predicted glycosyl transferase (NCBI) | compare |
| b1576 | ydfD | -0.9 | -2.1 | Qin prophage; predicted protein (NCBI) | compare |
| b1831 | proQ | -0.9 | -2.2 | putative solute/DNA competence effector (NCBI) | compare |
| b2565 | recO | -0.8 | -5.8 | DNA repair protein RecO (NCBI) | compare |
| b3933 | ftsN | -0.8 | -6.6 | essential cell division protein (NCBI) | compare |
| b4685 | yrbN | -0.8 | -2.1 | expressed protein (RefSeq) | compare |
| b2859 | ygeO | -0.8 | -2.1 | hypothetical protein (RefSeq) | compare |
| b2947 | gshB | -0.8 | -3.4 | glutathione synthetase (NCBI) | compare |
| b1104 | ycfL | -0.8 | -1.0 | hypothetical protein (NCBI) | compare |
| b3726 | pstA | -0.8 | -4.2 | phosphate transporter subunit (NCBI) | compare |
| b1730 | ydjO | -0.8 | -1.7 | predicted protein (RefSeq) | compare |
| b2935 | tktA | -0.8 | -3.9 | transketolase 1, thiamin-binding (NCBI) | compare |
| b1290 | sapF | -0.8 | -1.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b2363 | yfdT | -0.8 | -2.4 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b4201 | priB | -0.8 | -3.4 | primosomal replication protein N (NCBI) | compare |
| b4017 | arpA | -0.8 | -4.0 | regulator of acetyl CoA synthetase (NCBI) | compare |
| b2350 | yfdG | -0.8 | -3.8 | CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase) (NCBI) | compare |
| b2642 | yfjW | -0.8 | -1.3 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b2951 | yggS | -0.8 | -3.3 | predicted enzyme (NCBI) | compare |
| b4172 | hfq | -0.7 | -1.6 | RNA-binding protein Hfq (NCBI) | compare |
| b2512 | yfgL | -0.7 | -5.0 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b3237 | argR | -0.7 | -4.7 | arginine repressor (NCBI) | compare |
| b4558 | yifL | -0.7 | -2.6 | predicted lipoprotein (NCBI) | compare |
| b3700 | recF | -0.7 | -5.7 | recombination protein F (NCBI) | compare |
| b0143 | pcnB | -0.7 | -4.8 | poly(A) polymerase I (VIMSS) | compare |
| b0494 | tesA | -0.7 | -3.4 | multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 (NCBI) | compare |
| b2652 | ileY | -0.7 | -2.4 | tRNA-Ile (NCBI) | compare |
| b0326 | yahL | -0.7 | -4.2 | hypothetical protein (NCBI) | compare |
| b4590 | ybfK | -0.7 | -2.9 | hypothetical protein (RefSeq) | compare |
| b1161 | ycgX | -0.7 | -0.8 | hypothetical protein (NCBI) | compare |
| b3871 | bipA | -0.7 | -5.9 | GTP-binding protein (NCBI) | compare |
| b3609 | secB | -0.7 | -2.3 | export protein SecB (NCBI) | compare |
| b4345 | mcrC | -0.7 | -1.9 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b1860 | ruvB | -0.7 | -1.5 | Holliday junction DNA helicase B (NCBI) | compare |
| b3811 | xerC | -0.7 | -3.2 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b0564 | appY | -0.7 | -1.0 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b3183 | obgE | -0.7 | -1.6 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b2617 | smpA | -0.7 | -3.7 | small membrane protein A (VIMSS) | compare |
| b2937 | speB | -0.7 | -4.8 | agmatinase (NCBI) | compare |
| b3047 | yqiH | -0.7 | -4.1 | putative membrane protein (VIMSS) | compare |
| b1548 | nohA | -0.7 | -2.8 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b3386 | rpe | -0.7 | -2.4 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b2288 | nuoA | -0.7 | -2.7 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b1160 | elbA | -0.7 | -1.6 | hypothetical protein (NCBI) | compare |
| b2650 | ypjC | -0.7 | -1.3 | hypothetical protein (RefSeq) | compare |
| b4631 | ykgQ | -0.7 | -1.6 | no description | compare |
| b1407 | ydbD | -0.7 | -4.4 | orf, hypothetical protein (VIMSS) | compare |
| b0407 | yajC | -0.7 | -1.7 | preprotein translocase subunit YajC (NCBI) | compare |
| b2620 | smpB | -0.7 | -2.3 | SsrA-binding protein (NCBI) | compare |
| b1121 | ycfZ | -0.7 | -3.4 | predicted inner membrane protein (NCBI) | compare |
| b1286 | rnb | -0.7 | -3.0 | exoribonuclease II (NCBI) | compare |
| b4494 | arpB | -0.7 | -3.6 | no description | compare |
| b2778 | ygcG | -0.7 | -3.4 | orf, hypothetical protein (VIMSS) | compare |
| b2501 | ppk | -0.6 | -5.0 | polyphosphate kinase (NCBI) | compare |
| b3940 | metL | -0.6 | -4.0 | bifunctional aspartate kinase II/homoserine dehydrogenase II (NCBI) | compare |
| b2895 | fldB | -0.6 | -2.5 | flavodoxin 2 (NCBI) | compare |
| b3622 | rfaL | -0.6 | -4.7 | O-antigen ligase (NCBI) | compare |
| b3649 | rpoZ | -0.6 | -2.2 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b2352 | yfdI | -0.6 | -2.3 | CPS-53 (KpLE1) prophage; predicted inner membrane protein (NCBI) | compare |
| b2910 | zapA | -0.6 | -3.4 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b2618 | b2618 | -0.6 | -2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1368 | ynaA | -0.6 | -2.6 | Rac prophage; predicted tail protein (RefSeq) | compare |
| b2291 | yfbR | -0.6 | -1.6 | hypothetical protein (NCBI) | compare |
| b0294 | ykgK | -0.6 | -2.6 | predicted regulator (NCBI) | compare |
| b2513 | yfgM | -0.6 | -1.6 | hypothetical protein (NCBI) | compare |
| b1258 | yciF | -0.6 | -3.0 | hypothetical protein (NCBI) | compare |
| b0742 | ybgF | -0.6 | -3.7 | hypothetical protein (NCBI) | compare |
| b2576 | srmB | -0.6 | -2.8 | ATP-dependent RNA helicase (NCBI) | compare |
| b3021 | ygiT | -0.6 | -1.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4552 | yrhC | -0.6 | -1.0 | no description | compare |
| b4177 | purA | -0.6 | -2.5 | adenylosuccinate synthetase (NCBI) | compare |
| b1690 | ydiM | -0.6 | -3.9 | predicted transporter (NCBI) | compare |
| b2734 | pphB | -0.6 | -3.3 | serine/threonine-specific protein phosphatase 2 (NCBI) | compare |
| b0787 | ybhM | -0.6 | -3.3 | conserved inner membrane protein (NCBI) | compare |
| b0300 | ykgA | -0.6 | -3.2 | putative ARAC-type regulatory protein (VIMSS) | compare |
| b3026 | qseC | -0.6 | -3.4 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b2892 | recJ | -0.6 | -4.0 | ssDNA exonuclease, 5' --> 3'-specific (NCBI) | compare |
| b0028 | fkpB | -0.6 | -1.2 | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b0082 | mraW | -0.6 | -3.0 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1951 | rcsA | -0.6 | -2.9 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b2683 | ygaH | -0.6 | -2.9 | predicted inner membrane protein (NCBI) | compare |
| b3742 | mioC | -0.6 | -3.4 | flavodoxin (NCBI) | compare |
| b1159 | mcrA | -0.5 | -1.6 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b1540 | ydfH | -0.5 | -1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |