Experiment set6IT051 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu1750 -6.3 -5.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu2036 -6.1 -9.4 acetolactate synthase III, large subunit compare
Atu1588 -5.7 -6.7 homoserine dehydrogenase compare
Atu1687 -5.6 -11.4 anthranilate phosphoribosyltransferase compare
Atu3908 -5.4 -10.5 GntR family transcriptional regulator compare
Atu0030 -5.2 -1.3 phosphocarrier protein HPr compare
Atu0043 -4.9 -2.7 imidazoleglycerol-phosphate dehydratase compare
Atu1205 -4.8 -14.5 threonine dehydratase compare
Atu1874 -4.7 -3.3 RecA protein compare
Atu2289 -4.5 -16.8 anthranilate synthase component I and II compare
Atu0017 -4.1 -3.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1688 -3.9 -7.2 indole-3-glycerol-phosphate synthase compare
Atu4317 -3.9 -3.4 TetR family transcriptional regulator compare
Atu3763 -3.9 -1.9 hypothetical protein compare
Atu0678 -3.9 -7.8 histidyl-tRNA synthetase compare
Atu2084 -3.8 -0.9 hypothetical protein compare
Atu0039 -3.8 -1.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu3912 -3.7 -8.9 hypothetical protein compare
Atu0041 -3.7 -1.8 glutamine amidotransferase compare
Atu1359 -3.7 -0.9 dnaK deletion suppressor protein compare
Atu0679 -3.6 -6.5 ATP phosphoribosyltransferase compare
Atu0269 -3.6 -5.5 exodeoxyribonuclease VII large subunit compare
Atu0038 -3.6 -4.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0093 -3.6 -6.8 Recombination protein compare
Atu2040 -3.5 -6.7 phosphoserine phosphatase compare
Atu3707 -3.5 -3.1 phosphoserine aminotransferase compare
Atu2125 -3.5 -2.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu2728 -3.4 -2.4 beta (1-->2) glucan export ATP-binding protein compare
Atu4055 -3.4 -6.0 endo-1,3-1,4-beta-glycanase compare
Atu2439 -3.4 -1.2 hypothetical protein compare
Atu2057 -3.4 -3.7 DNA helicase II compare
Atu2207 -3.3 -5.1 two component sensor kinase compare
Atu0971 -3.3 -3.9 two component sensor kinase compare
Atu3910 -3.2 -5.4 LamB/YcsF family protein compare
Atu3755 -3.2 -6.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2684 -3.1 -2.2 hypothetical protein compare
Atu1129 -3.1 -7.0 excinuclease ABC chain C compare
Atu0537 -3.1 -8.1 histidinol dehydrogenase compare
Atu1845 -3.0 -3.4 phosphoribosylformylglycinamidine synthase I compare
Atu0073 -3.0 -6.4 recF-like protein compare
Atu1030 -3.0 -1.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1683 -3.0 -2.8 hypothetical protein compare
Atu3739 -2.9 -2.7 phosphoglycerate kinase compare
Atu3754 -2.9 -4.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1646 -2.9 -4.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu0645 -2.9 -1.0 hypothetical protein compare
Atu2052 -2.9 -8.4 hypothetical protein compare
Atu2083 -2.9 -4.8 DNA repair protein RecN compare
Atu2648 -2.8 -4.3 hypothetical protein compare
Atu4711 -2.8 -8.3 two component sensor kinase compare
Atu0769 -2.8 -2.2 protoheme IX farnesyltransferase compare
Atu8167 -2.8 -10.9 putative transmembrane protein compare
Atu1077 -2.7 -4.7 DNA repair protein compare
Atu0188 -2.7 -3.0 ABC transporter, membrane spanning protein (peptide) compare
Atu0399 -2.7 -7.8 dihydroorotase compare
Atu1141 -2.7 -4.7 Phosphoribosylglycinamide synthetase compare
Atu1417 -2.7 -7.8 enoyl-CoA hydratase compare
Atu1513 -2.6 -6.8 ABC excinuclease subunit A compare
Atu6021 -2.6 -12.7 D-nopaline dehydrogenase compare
Atu3706 -2.6 -6.2 D-3-phosphoglycerate dehydrogenase compare
Atu6019 -2.6 -14.6 D-nopaline dehydrogenase compare
Atu1140 -2.5 -4.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0533 -2.5 -2.6 putative inhibitor of septum formation compare
Atu2650 -2.5 -8.2 glycerol-3-phosphate dehydrogenase compare
Atu0784 -2.5 -3.1 hypothetical protein compare
Atu0422 -2.4 -2.4 ABC transporter, membrane spanning protein compare
Atu1844 -2.4 -3.1 Phosphoribosylformylglycinamidine synthetase compare
Atu4773 -2.4 -1.7 two component response regulator compare
Atu0331 -2.4 -2.0 sigma-54 modulation protein compare
Atu0647 -2.4 -6.2 phosphoribosylamine--glycine ligase compare
Atu1850 -2.4 -3.4 phosphoribosylformylglycinamidine synthetase II compare
Atu2264 -2.4 -9.6 2-isopropylmalate synthase compare
Atu0361 -2.3 -3.2 transcriptional regulator compare
Atu0401 -2.3 -6.3 fructokinase compare
Atu2790 -2.3 -1.9 3-isopropylmalate dehydratase, small subunit compare
Atu1447 -2.3 -2.6 two component sensor kinase compare
Atu1647 -2.3 -9.7 ABC transporter, membrane spanning protein compare
Atu3913 -2.2 -4.8 biotin carboxylase compare
Atu6020 -2.2 -4.8 conserved hypothetical protein compare
Atu8096 -2.2 -1.3 hypothetical protein compare
Atu1705 -2.2 -3.0 SEC-independent protein translocase protein compare
Atu0977 -2.2 -3.7 serine protease DO-like protease compare
Atu3469 -2.2 -3.5 phosphoglyceromutase compare
Atu3963 -2.1 -8.1 GntR family transcriptional regulator compare
Atu1644 -2.1 -2.3 hypothetical protein compare
Atu1364 -2.1 -6.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1904 -2.1 -5.2 transcriptional regulator compare
Atu1838 -2.1 -4.4 ABC transporter, substrate binding protein (amino acid) compare
Atu1952 -2.0 -1.2 hypothetical protein compare
Atu1620 -2.0 -9.9 triosephosphate isomerase compare
Atu2791 -2.0 -5.9 3-isopropylmalate dehydrogenase compare
Atu2649 -2.0 -3.5 hypothetical protein compare
Atu0086 -2.0 -1.1 ribosome-binding factor A compare
Atu8054 -1.9 -0.8 hypothetical protein compare
Atu0298 -1.9 -6.1 orotidine 5 compare
Atu0062 -1.9 -7.3 transcriptional regulator, ROK family compare
Atu2293 -1.9 -2.2 hypothetical protein compare
Atu2718 -1.9 -5.9 homoserine O-succinyltransferase compare
Atu4514 -1.9 -3.1 RpiR family transcriptional regulator compare
Atu2793 -1.9 -4.7 cobyrinic acid a,c-diamide synthase compare
Atu1645 -1.9 -5.4 ABC transporter, substrate binding protein compare
Atu1039 -1.8 -3.2 DNA repair protein RecO compare
Atu0184 -1.8 -2.6 glucokinase compare
Atu1103 -1.8 -2.6 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0499 -1.8 -7.8 hypothetical protein compare
Atu0029 -1.8 -3.9 S-adenosylhomocysteine hydrolase compare
Atu3311 -1.8 -8.6 phosphomannose isomerase compare
Atu3740 -1.7 -7.0 fructose bisphosphate aldolase compare
Atu3353 -1.7 -6.9 mannose-1-phosphate guanylyltransferase compare
Atu1422 -1.7 -6.5 transcriptional regulator, MarR family compare
Atu2800 -1.7 -2.4 precorrin-3B C17-methyltransferase compare
Atu2709 -1.7 -11.7 3-isopropylmalate dehydratase, large subunit compare
Atu1075 -1.7 -4.3 amidophosphoribosyltransferase compare
Atu1225 -1.7 -1.4 hypothetical protein compare
Atu1739 -1.7 -3.6 permease compare
Atu0771 -1.7 -5.4 cytochrome c oxidase subunit III compare
Atu0161 -1.7 -9.0 biopolymer transport protein compare
Atu2379 -1.6 -7.4 phosphomannomutase compare
Atu0040 -1.6 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3885 -1.6 -6.6 inositol monophosphatase compare
Atu3012 -1.6 -1.7 hypothetical protein compare
Atu4702 -1.6 -3.5 GntR family transcriptional regulator compare
Atu6189 -1.6 -1.4 protein secretion chaperone compare
Atu1902 -1.6 -5.5 transketolase compare
Atu1232 -1.6 -1.8 hypothetical protein compare
Atu1163 -1.6 -1.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0354 -1.6 -1.9 ferric uptake regulator compare
Atu4540 -1.5 -2.1 protocatechuate 3,4-dioxygenase subunit beta compare
Atu0201 -1.5 -1.6 hypothetical protein compare
Atu0101 -1.5 -3.7 cytochrome c compare
Atu1836 -1.5 -1.6 hypothetical protein compare
Atu0923 -1.5 -5.0 hypothetical protein compare
Atu1518 -1.5 -2.6 transcriptional regulator, Fur family compare
Atu0660 -1.5 -5.7 hydrolase compare
Atu1219 -1.5 -0.9 hypothetical protein compare
Atu2115 -1.5 -6.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2376 -1.5 -1.7 hypothetical protein compare
Atu4616 -1.5 -1.6 dTDP-4-dehydrorhamnose reductase compare
Atu0036 -1.5 -1.9 hypothetical protein compare
Atu4532 -1.5 -5.8 shikimate 5-dehydrogenase compare
Atu1354 -1.5 -1.1 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu4610 -1.5 -7.3 sugar nucleotide epimerase/dehydratase compare
Atu1307 -1.5 -4.7 dihydroorotase compare
Atu1464 -1.4 -6.3 glycine cleavage system T protein, aminomethyltransferase compare
Atu0163 -1.4 -5.4 tonB protein compare
Atu0912 -1.4 -0.9 Na+/H+ antiporter compare
Atu4160 -1.4 -4.1 RNA polymerase sigma factor compare
Atu0432 -1.4 -6.6 O-succinylhomoserine sulfhydrylase compare
Atu2768 -1.4 -4.9 hypothetical protein compare
Atu0099 -1.4 -4.8 prephenate dehydratase compare
Atu4407 -1.4 -2.5 periplasmic nitrate reductase, NapD protein compare
Atu0978 -1.4 -5.1 two component response regulator compare
Atu3115 -1.4 -3.2 TetR family transcriptional regulator compare
Atu4364 -1.4 -5.3 LacI family transcriptional regulator compare
Atu1286 -1.4 -3.5 hypothetical protein compare
Atu4346 -1.4 -2.9 hypothetical protein compare
Atu3971 -1.4 -6.5 dihydroxy-acid dehydratase compare
Atu1308 -1.3 -2.9 aspartate carbamoyl transferase catalytic subunit compare
Atu2554 -1.3 -1.4 lysyl-tRNA synthetase compare
Atu3162 -1.3 -4.2 LacI family transcriptional regulator compare
Atu1021 -1.3 -1.6 outer membrane protein compare
Atu0723 -1.3 -1.4 FAD dependent oxidoreductase compare
Atu2730 -1.3 -8.3 beta (1-->2) glucan biosynthesis protein compare
Atu1099 -1.3 -4.0 hypothetical protein compare
Atu5464 -1.3 -4.7 IclR family transcriptional regulator compare
Atu0486 -1.3 -3.2 dihydroorotate dehydrogenase compare
Atu8052 -1.3 -1.0 hypothetical protein compare
Atu1580 -1.3 -4.8 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu2821 -1.3 -3.8 transcriptional regulator, GntR family compare
Atu1577 -1.3 -3.5 ABC transporter, substrate binding protein (amino acid) compare
Atu4157 -1.3 -7.9 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
Atu0328 -1.3 -6.1 heat-inducible transcription repressor compare
Atu2001 -1.3 -4.5 excinuclease ABC subunit B compare
Atu3219 -1.3 -5.1 dihydroxy-acid dehydratase compare
Atu2146 -1.3 -3.0 hypothetical protein compare
Atu2590 -1.3 -5.1 hypothetical protein compare
Atu0162 -1.3 -4.8 biopolymer transport protein compare
Atu0142 -1.3 -1.5 cytochrome o ubiquinol oxidase subunit II compare
Atu3343 -1.3 -4.8 trehalose utilization-like protein compare
Atu4685 -1.2 -4.5 LacI family transcriptional regulator compare
Atu1578 -1.2 -4.4 ABC transporter, membrane spanning protein (amino acid) compare
Atu3005 -1.2 -0.8 hypothetical protein compare
Atu3688 -1.2 -2.6 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu4505 -1.2 -4.0 LacI family transcriptional regulator compare
Atu3337 -1.2 -4.4 LacI family transcriptional regulator compare
Atu4166 -1.2 -1.0 UDP-glucose 4-epimerase compare
Atu5125 -1.2 -3.0 GntR family transcriptional regulator compare
Atu3999 -1.2 -1.2 dithiobiotin synthetase compare
Atu6145 -1.2 -6.3 arabinose phosphate phosphatase compare
Atu2067 -1.2 -0.6 hypothetical protein compare
Atu5475 -1.2 -2.3 hypothetical protein compare
Atu0501 -1.2 -5.7 acyl-CoA dehydrogenase compare
Atu3293 -1.2 -3.9 D-amino acid dehydrogenase small subunit compare
Atu0544 -1.2 -1.4 hypothetical protein compare
Atu0050 -1.2 -3.6 two component response regulator compare
Atu6098 -1.2 -0.5 transcriptional regulator, HTH family compare
Atu4824 -1.2 -4.1 IclR family transcriptional regulator compare
Atu1566 -1.2 -0.9 hypothetical protein compare
Atu2113 -1.1 -1.4 N-acetylmuramoyl-L-alanine amidase compare
Atu4825 -1.1 -3.2 dehydrogenase compare


Specific Phenotypes

For 11 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms