Experiment set6IT049 for Escherichia coli BW25113
LB with Nalidixic acid sodium salt 0.006 mg/ml
Group: stressMedia: LB + Nalidixic acid sodium salt (0.006 mg/ml)
Culturing: Keio_ML9, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 2/2/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1134 A5,A6
Specific Phenotypes
For 14 genes in this experiment
For stress Nalidixic acid sodium salt in Escherichia coli BW25113
For stress Nalidixic acid sodium salt across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA-replication | 3 |
| DNA Repair Base Excision | 2 |
| DNA repair, bacterial | 2 |
| DNA repair, bacterial DinG and relatives | 2 |
| DNA repair, bacterial RecFOR pathway | 1 |
| KDO2-Lipid A biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| di-trans,poly-cis-undecaprenyl phosphate biosynthesis | 2 | 2 | 1 |
| CMP-3-deoxy-D-manno-octulosonate biosynthesis | 5 | 5 | 1 |
| polyisoprenoid biosynthesis (E. coli) | 5 | 5 | 1 |
| CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis | 7 | 4 | 1 |
| superpathway of (Kdo)2-lipid A biosynthesis | 17 | 17 | 1 |
| superpathway of Kdo2-lipid A biosynthesis | 25 | 24 | 1 |