Experiment set6IT049 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu3908 -7.1 -4.9 GntR family transcriptional regulator compare
Atu1588 -6.2 -7.4 homoserine dehydrogenase compare
Atu1750 -6.1 -4.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu2036 -6.0 -10.8 acetolactate synthase III, large subunit compare
Atu1205 -5.7 -12.8 threonine dehydratase compare
Atu2289 -5.7 -16.4 anthranilate synthase component I and II compare
Atu3913 -5.5 -8.4 biotin carboxylase compare
Atu0030 -5.2 -1.7 phosphocarrier protein HPr compare
Atu0679 -5.1 -7.0 ATP phosphoribosyltransferase compare
Atu0043 -5.0 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu0537 -4.9 -6.8 histidinol dehydrogenase compare
Atu3912 -4.8 -7.3 hypothetical protein compare
Atu1874 -4.8 -3.3 RecA protein compare
Atu0678 -4.6 -7.1 histidyl-tRNA synthetase compare
Atu3910 -4.6 -3.6 LamB/YcsF family protein compare
Atu1688 -4.4 -8.9 indole-3-glycerol-phosphate synthase compare
Atu1687 -4.4 -11.1 anthranilate phosphoribosyltransferase compare
Atu0038 -4.2 -5.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu8138 -4.2 -1.9 hypothetical protein compare
Atu3763 -4.1 -2.5 hypothetical protein compare
Atu0331 -4.0 -3.4 sigma-54 modulation protein compare
Atu0039 -3.8 -2.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu0041 -3.8 -2.3 glutamine amidotransferase compare
Atu1359 -3.7 -1.1 dnaK deletion suppressor protein compare
Atu1039 -3.7 -5.6 DNA repair protein RecO compare
Atu0093 -3.6 -5.9 Recombination protein compare
Atu2728 -3.5 -2.4 beta (1-->2) glucan export ATP-binding protein compare
Atu0017 -3.5 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1714 -3.5 -1.9 exonuclease III compare
Atu1129 -3.4 -11.2 excinuclease ABC chain C compare
Atu4616 -3.4 -2.2 dTDP-4-dehydrorhamnose reductase compare
Atu2264 -3.4 -13.2 2-isopropylmalate synthase compare
Atu0769 -3.3 -2.8 protoheme IX farnesyltransferase compare
Atu4773 -3.3 -2.1 two component response regulator compare
Atu6098 -3.3 -1.0 transcriptional regulator, HTH family compare
Atu0073 -3.3 -6.3 recF-like protein compare
Atu0422 -3.1 -3.1 ABC transporter, membrane spanning protein compare
Atu1030 -3.1 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4711 -3.0 -7.2 two component sensor kinase compare
Atu2057 -2.9 -3.6 DNA helicase II compare
Atu0971 -2.9 -4.8 two component sensor kinase compare
Atu2040 -2.9 -5.3 phosphoserine phosphatase compare
Atu3706 -2.9 -10.0 D-3-phosphoglycerate dehydrogenase compare
Atu0269 -2.9 -5.7 exodeoxyribonuclease VII large subunit compare
Atu2083 -2.8 -4.6 DNA repair protein RecN compare
Atu2684 -2.8 -1.9 hypothetical protein compare
Atu2648 -2.7 -4.9 hypothetical protein compare
Atu2709 -2.7 -16.4 3-isopropylmalate dehydratase, large subunit compare
Atu1225 -2.7 -2.7 hypothetical protein compare
Atu8018 -2.7 -1.2 hypothetical protein compare
Atu1513 -2.6 -7.6 ABC excinuclease subunit A compare
Atu2790 -2.6 -2.5 3-isopropylmalate dehydratase, small subunit compare
Atu2791 -2.6 -8.2 3-isopropylmalate dehydrogenase compare
Atu4055 -2.6 -7.8 endo-1,3-1,4-beta-glycanase compare
Atu3311 -2.6 -13.7 phosphomannose isomerase compare
Atu2125 -2.5 -2.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu0086 -2.5 -1.5 ribosome-binding factor A compare
Atu1364 -2.5 -7.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu6021 -2.4 -13.6 D-nopaline dehydrogenase compare
Atu6019 -2.4 -15.8 D-nopaline dehydrogenase compare
Atu2439 -2.4 -1.2 hypothetical protein compare
Atu1683 -2.4 -3.0 hypothetical protein compare
Atu0040 -2.4 -1.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2650 -2.3 -10.1 glycerol-3-phosphate dehydrogenase compare
Atu0399 -2.3 -6.0 dihydroorotase compare
Atu1647 -2.3 -9.6 ABC transporter, membrane spanning protein compare
Atu0153 -2.3 -5.4 transcriptional regulator, Fur family compare
Atu3353 -2.3 -10.5 mannose-1-phosphate guanylyltransferase compare
Atu3885 -2.3 -7.2 inositol monophosphatase compare
Atu0400 -2.2 -4.4 orotate phosphoribosyltransferase compare
Atu1570 -2.2 -1.0 hypothetical protein compare
Atu0434 -2.2 -3.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0977 -2.1 -5.1 serine protease DO-like protease compare
Atu2113 -2.1 -3.9 N-acetylmuramoyl-L-alanine amidase compare
Atu0141 -2.1 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu0029 -2.1 -5.8 S-adenosylhomocysteine hydrolase compare
Atu1141 -2.1 -5.8 Phosphoribosylglycinamide synthetase compare
Atu8167 -2.1 -11.1 putative transmembrane protein compare
Atu1077 -2.1 -3.4 DNA repair protein compare
Atu3707 -2.1 -3.6 phosphoserine aminotransferase compare
Atu3755 -2.1 -4.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4166 -2.0 -2.5 UDP-glucose 4-epimerase compare
Atu2379 -2.0 -8.6 phosphomannomutase compare
Atu1103 -2.0 -3.7 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0291 -2.0 -8.3 hypothetical protein compare
Atu0647 -1.9 -4.9 phosphoribosylamine--glycine ligase compare
Atu3963 -1.9 -6.7 GntR family transcriptional regulator compare
Atu1646 -1.9 -4.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu0432 -1.9 -7.8 O-succinylhomoserine sulfhydrylase compare
Atu1705 -1.9 -5.7 SEC-independent protein translocase protein compare
Atu3219 -1.9 -10.0 dihydroxy-acid dehydratase compare
Atu0401 -1.9 -5.4 fructokinase compare
Atu2718 -1.9 -6.1 homoserine O-succinyltransferase compare
Atu1417 -1.9 -4.3 enoyl-CoA hydratase compare
Atu1327 -1.9 -2.2 NADH-ubiquinone oxidoreductase compare
Atu0099 -1.9 -7.7 prephenate dehydratase compare
Atu3469 -1.9 -3.7 phosphoglyceromutase compare
Atu2207 -1.9 -4.3 two component sensor kinase compare
Atu2590 -1.9 -8.6 hypothetical protein compare
Atu1308 -1.8 -4.6 aspartate carbamoyl transferase catalytic subunit compare
Atu6020 -1.8 -4.8 conserved hypothetical protein compare
Atu2183 -1.8 -7.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0062 -1.8 -9.9 transcriptional regulator, ROK family compare
Atu3754 -1.8 -5.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1904 -1.8 -3.8 transcriptional regulator compare
Atu0784 -1.7 -3.7 hypothetical protein compare
Atu1739 -1.7 -5.6 permease compare
Atu0846 -1.7 -4.9 transcriptional regulator, MarR family compare
Atu4317 -1.7 -3.0 TetR family transcriptional regulator compare
Atu1307 -1.6 -4.9 dihydroorotase compare
Atu1140 -1.6 -3.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2800 -1.6 -3.6 precorrin-3B C17-methyltransferase compare
Atu1838 -1.6 -4.1 ABC transporter, substrate binding protein (amino acid) compare
Atu2730 -1.6 -9.5 beta (1-->2) glucan biosynthesis protein compare
Atu3730 -1.6 -1.2 hypothetical protein compare
Atu1644 -1.6 -2.1 hypothetical protein compare
Atu1422 -1.6 -6.5 transcriptional regulator, MarR family compare
Atu1518 -1.6 -5.1 transcriptional regulator, Fur family compare
Atu2052 -1.6 -5.3 hypothetical protein compare
Atu4072 -1.5 -1.9 nodulation protein N compare
Atu1645 -1.5 -5.4 ABC transporter, substrate binding protein compare
Atu3971 -1.5 -8.5 dihydroxy-acid dehydratase compare
Atu1470 -1.5 -1.0 Camphor resistance protein compare
Atu1163 -1.5 -1.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1447 -1.5 -1.6 two component sensor kinase compare
Atu6114 -1.5 -1.7 hypothetical protein compare
Atu4685 -1.5 -6.5 LacI family transcriptional regulator compare
Atu4346 -1.5 -4.6 hypothetical protein compare
Atu4610 -1.5 -8.0 sugar nucleotide epimerase/dehydratase compare
Atu1075 -1.4 -4.5 amidophosphoribosyltransferase compare
Atu5464 -1.4 -7.3 IclR family transcriptional regulator compare
Atu1354 -1.4 -1.3 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0184 -1.4 -2.7 glucokinase compare
Atu2001 -1.4 -4.6 excinuclease ABC subunit B compare
Atu2768 -1.4 -3.7 hypothetical protein compare
Atu1589 -1.4 -5.2 aminotransferase, class I compare
Atu5164 -1.4 -1.1 type IV secretion protein AvhB3 compare
Atu1302 -1.4 -3.1 hypothetical protein compare
Atu2591 -1.4 -7.2 glucosyltransferase compare
Atu4149 -1.3 -8.4 UDP-glucose 6-dehydrogenase compare
Atu3739 -1.3 -2.7 phosphoglycerate kinase compare
Atu2692 -1.3 -3.2 intracellular septation protein compare
Atu1902 -1.3 -4.5 transketolase compare
Atu2606 -1.3 -2.7 transcriptional regulator, GntR family compare
Atu0690 -1.3 -2.2 hypothetical protein compare
Atu5125 -1.3 -4.6 GntR family transcriptional regulator compare
Atu0660 -1.3 -5.8 hydrolase compare
Atu8025 -1.3 -0.9 hypothetical protein compare
Atu4364 -1.3 -5.7 LacI family transcriptional regulator compare
Atu0188 -1.3 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu2682 -1.3 -4.1 hypothetical protein compare
Atu4148 -1.3 -5.0 UDP-glucuronic acid epimerase compare
Atu4618 -1.3 -7.1 dTDP-rhamnose-3,5-epimerase compare
Atu2832 -1.3 -2.7 tRNA modification GTPase compare
Atu2662 -1.3 -1.4 acetyltransferase compare
Atu2239 -1.2 -2.1 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2585 -1.2 -5.0 hypothetical protein compare
Atu2592 -1.2 -4.5 hypothetical protein compare
Atu2237 -1.2 -4.5 cytochrome c1 compare
Atu0142 -1.2 -2.1 cytochrome o ubiquinol oxidase subunit II compare
Atu2464 -1.2 -2.0 formyltetrahydrofolate deformylase compare
Atu1845 -1.2 -3.0 phosphoribosylformylglycinamidine synthase I compare
Atu0499 -1.2 -6.2 hypothetical protein compare
Atu0979 -1.2 -3.6 two component sensor kinase compare
Atu3121 -1.2 -1.0 cold shock protein compare
Atu1952 -1.2 -1.0 hypothetical protein compare
Atu1577 -1.2 -3.0 ABC transporter, substrate binding protein (amino acid) compare
Atu2583 -1.2 -7.2 glycosyltransferase compare
Atu4532 -1.2 -5.8 shikimate 5-dehydrogenase compare
Atu0421 -1.2 -1.2 ABC transporter, membrane spanning protein compare
Atu2238 -1.2 -4.8 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3115 -1.1 -3.1 TetR family transcriptional regulator compare
Atu4702 -1.1 -4.1 GntR family transcriptional regulator compare
Atu2441 -1.1 -2.3 RNA methylase compare
Atu4641 -1.1 -2.2 LysR family transcriptional regulator compare
Atu4446 -1.1 -4.1 hypothetical protein compare
Atu4615 -1.1 -6.1 glucose-1-phosphate thymidylyltransferase compare
Atu0036 -1.1 -2.7 hypothetical protein compare
Atu0361 -1.1 -1.5 transcriptional regulator compare
Atu4323 -1.1 -3.0 ribitol 2-dehydrogenase compare
Atu3279 -1.1 -5.0 methanesulfonate sulfonatase compare
Atu0162 -1.1 -4.1 biopolymer transport protein compare
Atu0161 -1.1 -4.7 biopolymer transport protein compare
Atu1464 -1.1 -4.8 glycine cleavage system T protein, aminomethyltransferase compare
Atu8162 -1.1 -1.1 hypothetical protein compare
Atu3337 -1.1 -5.3 LacI family transcriptional regulator compare
Atu0205 -1.1 -5.7 methylmalonate-semialdehyde dehydrogenase compare
Atu0502 -1.1 -5.0 acetyl-CoA acetyltransferase compare
Atu4451 -1.1 -4.8 mannitol 2-dehydrogenase compare
Atu1634 -1.1 -1.5 hypothetical protein compare
Atu0510 -1.1 -5.9 pH adaption potassium efflux system protein compare
Atu4614 -1.1 -4.5 glycosyltransferase compare
Atu5160 -1.1 -2.5 transcriptional regulator protein compare
Atu0538 -1.1 -2.5 hypothetical protein compare
Atu3579 -1.1 -2.6 lactoylglutathione lyase compare
Atu1242 -1.1 -4.7 cytochrome oxidase assembly factor compare
Atu1251 -1.1 -5.6 O-acetylhomoserine sulfhydrylase compare
Atu6150 -1.1 -6.7 P-450 monooxygenase compare
Atu0501 -1.1 -6.2 acyl-CoA dehydrogenase compare
Atu0771 -1.0 -4.9 cytochrome c oxidase subunit III compare


Specific Phenotypes

For 10 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms