Experiment set6IT048 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu2036 -5.9 -7.1 acetolactate synthase III, large subunit compare
Atu1588 -5.5 -6.5 homoserine dehydrogenase compare
Atu0679 -5.2 -6.2 ATP phosphoribosyltransferase compare
Atu2040 -5.2 -5.0 phosphoserine phosphatase compare
Atu0678 -4.8 -6.6 histidyl-tRNA synthetase compare
Atu0043 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu3707 -4.7 -3.2 phosphoserine aminotransferase compare
Atu3908 -4.4 -11.1 GntR family transcriptional regulator compare
Atu0537 -4.3 -5.9 histidinol dehydrogenase compare
Atu0017 -4.3 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1750 -4.2 -3.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu0038 -4.1 -4.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2289 -4.0 -17.8 anthranilate synthase component I and II compare
Atu1205 -3.9 -13.2 threonine dehydratase compare
Atu0421 -3.8 -1.8 ABC transporter, membrane spanning protein compare
Atu3468 -3.8 -1.3 hypothetical protein compare
Atu0769 -3.8 -2.5 protoheme IX farnesyltransferase compare
Atu3706 -3.8 -8.7 D-3-phosphoglycerate dehydrogenase compare
Atu1874 -3.7 -3.6 RecA protein compare
Atu2684 -3.7 -2.9 hypothetical protein compare
Atu0039 -3.7 -2.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu2554 -3.5 -2.4 lysyl-tRNA synthetase compare
Atu3912 -3.5 -8.7 hypothetical protein compare
Atu1359 -3.4 -1.1 dnaK deletion suppressor protein compare
Atu2057 -3.4 -3.3 DNA helicase II compare
Atu1687 -3.4 -8.6 anthranilate phosphoribosyltransferase compare
Atu1570 -3.4 -1.1 hypothetical protein compare
Atu2728 -3.3 -2.3 beta (1-->2) glucan export ATP-binding protein compare
Atu2083 -3.2 -3.9 DNA repair protein RecN compare
Atu6098 -3.1 -1.0 transcriptional regulator, HTH family compare
Atu3469 -3.1 -4.1 phosphoglyceromutase compare
Atu4773 -3.1 -2.1 two component response regulator compare
Atu1129 -3.1 -10.1 excinuclease ABC chain C compare
Atu0269 -3.0 -5.0 exodeoxyribonuclease VII large subunit compare
Atu8138 -3.0 -1.9 hypothetical protein compare
Atu4711 -3.0 -7.8 two component sensor kinase compare
Atu3913 -2.9 -7.8 biotin carboxylase compare
Atu1688 -2.9 -7.0 indole-3-glycerol-phosphate synthase compare
Atu0030 -2.9 -1.7 phosphocarrier protein HPr compare
Atu3763 -2.9 -2.6 hypothetical protein compare
Atu1039 -2.8 -4.1 DNA repair protein RecO compare
Atu1030 -2.8 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0977 -2.7 -4.3 serine protease DO-like protease compare
Atu1845 -2.7 -4.6 phosphoribosylformylglycinamidine synthase I compare
Atu3885 -2.6 -9.8 inositol monophosphatase compare
Atu0331 -2.6 -3.4 sigma-54 modulation protein compare
Atu0971 -2.6 -4.2 two component sensor kinase compare
Atu1077 -2.5 -4.7 DNA repair protein compare
Atu2439 -2.5 -1.7 hypothetical protein compare
Atu1141 -2.5 -6.5 Phosphoribosylglycinamide synthetase compare
Atu3910 -2.5 -5.8 LamB/YcsF family protein compare
Atu2207 -2.5 -3.9 two component sensor kinase compare
Atu3739 -2.4 -2.7 phosphoglycerate kinase compare
Atu1447 -2.4 -2.6 two component sensor kinase compare
Atu0093 -2.4 -5.4 Recombination protein compare
Atu4055 -2.4 -8.0 endo-1,3-1,4-beta-glycanase compare
Atu0086 -2.3 -1.5 ribosome-binding factor A compare
Atu3754 -2.3 -4.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu8018 -2.3 -1.1 hypothetical protein compare
Atu0647 -2.3 -5.4 phosphoribosylamine--glycine ligase compare
Atu0040 -2.3 -1.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1140 -2.3 -4.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1075 -2.3 -5.7 amidophosphoribosyltransferase compare
Atu1417 -2.3 -7.2 enoyl-CoA hydratase compare
Atu0062 -2.2 -8.0 transcriptional regulator, ROK family compare
Atu1364 -2.2 -5.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2464 -2.2 -3.3 formyltetrahydrofolate deformylase compare
Atu0041 -2.2 -2.3 glutamine amidotransferase compare
Atu1644 -2.2 -3.1 hypothetical protein compare
Atu2791 -2.2 -6.0 3-isopropylmalate dehydrogenase compare
Atu8167 -2.2 -11.1 putative transmembrane protein compare
Atu0073 -2.2 -5.9 recF-like protein compare
Atu0399 -2.1 -7.0 dihydroorotase compare
Atu6020 -2.1 -6.5 conserved hypothetical protein compare
Atu2052 -2.1 -6.8 hypothetical protein compare
Atu6019 -2.1 -12.8 D-nopaline dehydrogenase compare
Atu0036 -2.1 -2.5 hypothetical protein compare
Atu1705 -2.0 -5.4 SEC-independent protein translocase protein compare
Atu6021 -2.0 -9.9 D-nopaline dehydrogenase compare
Atu0031 -2.0 -1.5 PTS system, IIA component compare
Atu1850 -2.0 -2.8 phosphoribosylformylglycinamidine synthetase II compare
Atu2264 -1.9 -8.0 2-isopropylmalate synthase compare
Atu1513 -1.9 -6.1 ABC excinuclease subunit A compare
Atu1844 -1.9 -3.1 Phosphoribosylformylglycinamidine synthetase compare
Atu0115 -1.9 -1.1 hypothetical protein compare
Atu4166 -1.8 -2.2 UDP-glucose 4-epimerase compare
Atu2709 -1.8 -11.3 3-isopropylmalate dehydratase, large subunit compare
Atu5125 -1.8 -5.5 GntR family transcriptional regulator compare
Atu2648 -1.8 -4.2 hypothetical protein compare
Atu2790 -1.8 -1.7 3-isopropylmalate dehydratase, small subunit compare
Atu0201 -1.8 -2.1 hypothetical protein compare
Atu3353 -1.8 -9.0 mannose-1-phosphate guanylyltransferase compare
Atu0978 -1.8 -5.8 two component response regulator compare
Atu3219 -1.8 -9.4 dihydroxy-acid dehydratase compare
Atu0784 -1.8 -3.3 hypothetical protein compare
Atu0184 -1.7 -2.4 glucokinase compare
Atu2787 -1.7 -0.8 hypothetical protein compare
Atu2650 -1.7 -8.5 glycerol-3-phosphate dehydrogenase compare
Atu2718 -1.7 -5.7 homoserine O-succinyltransferase compare
Atu4610 -1.7 -9.1 sugar nucleotide epimerase/dehydratase compare
Atu4061 -1.7 -3.0 exopolysaccharide production repressor protein compare
Atu3311 -1.7 -9.5 phosphomannose isomerase compare
Atu2379 -1.6 -7.6 phosphomannomutase compare
Atu8054 -1.6 -0.9 hypothetical protein compare
Atu1175 -1.6 -1.5 hypothetical protein compare
Atu0099 -1.6 -6.1 prephenate dehydratase compare
Atu2067 -1.6 -0.9 hypothetical protein compare
Atu3963 -1.6 -5.1 GntR family transcriptional regulator compare
Atu0400 -1.6 -3.7 orotate phosphoribosyltransferase compare
Atu0153 -1.6 -4.9 transcriptional regulator, Fur family compare
Atu3663 -1.6 -1.4 hypothetical protein compare
Atu0142 -1.5 -3.1 cytochrome o ubiquinol oxidase subunit II compare
Atu0026 -1.5 -1.0 hypothetical protein compare
Atu1028 -1.5 -1.9 hypothetical protein compare
Atu0101 -1.5 -4.4 cytochrome c compare
Atu0401 -1.5 -3.6 fructokinase compare
Atu4072 -1.5 -1.8 nodulation protein N compare
Atu0025 -1.5 -2.9 hypothetical protein compare
Atu2649 -1.4 -3.2 hypothetical protein compare
Atu4317 -1.4 -2.7 TetR family transcriptional regulator compare
Atu0141 -1.4 -1.4 cytochrome O ubiquinol oxidase subunit I compare
Atu1647 -1.4 -4.7 ABC transporter, membrane spanning protein compare
Atu0050 -1.4 -3.8 two component response regulator compare
Atu1225 -1.4 -1.3 hypothetical protein compare
Atu1780 -1.4 -6.7 ATP-dependent DNA helicase compare
Atu3971 -1.4 -6.7 dihydroxy-acid dehydratase compare
Atu2001 -1.3 -6.9 excinuclease ABC subunit B compare
Atu0422 -1.3 -1.3 ABC transporter, membrane spanning protein compare
Atu2798 -1.3 -2.8 precorrin-6y methyltransferase compare
Atu1021 -1.3 -1.5 outer membrane protein compare
Atu4641 -1.3 -2.6 LysR family transcriptional regulator compare
Atu4364 -1.3 -5.5 LacI family transcriptional regulator compare
Atu2824 -1.3 -3.4 hypothetical protein compare
Atu4616 -1.3 -1.8 dTDP-4-dehydrorhamnose reductase compare
Atu2522 -1.3 -6.2 agrobacterium chromosomal virulence protein B compare
Atu1902 -1.3 -4.7 transketolase compare
Atu0801 -1.3 -7.9 chromosome segregation protein compare
Atu1422 -1.3 -4.9 transcriptional regulator, MarR family compare
Atu4346 -1.3 -3.4 hypothetical protein compare
Atu2640 -1.3 -3.4 hypothetical protein compare
Atu2184 -1.3 -3.5 transcriptional regulator, AsnC family compare
Atu0205 -1.3 -7.1 methylmalonate-semialdehyde dehydrogenase compare
Atu4056 -1.3 -5.2 succinoglycan biosynthesis protein compare
Atu5451 -1.2 -1.1 hypothetical protein compare
Atu2730 -1.2 -7.7 beta (1-->2) glucan biosynthesis protein compare
Atu0432 -1.2 -3.7 O-succinylhomoserine sulfhydrylase compare
Atu0029 -1.2 -3.2 S-adenosylhomocysteine hydrolase compare
Atu1535 -1.2 -2.6 cytochrome c oxidase, FixQ chain compare
Atu4685 -1.2 -5.0 LacI family transcriptional regulator compare
Atu2238 -1.2 -4.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0923 -1.2 -3.7 hypothetical protein compare
Atu0486 -1.2 -3.3 dihydroorotate dehydrogenase compare
Atu1099 -1.2 -3.9 hypothetical protein compare
Atu4613 -1.2 -6.7 glycosyltransferase compare
Atu2267 -1.2 -4.7 hypothetical protein compare
Atu0499 -1.2 -5.2 hypothetical protein compare
Atu2620 -1.2 -1.1 hypothetical protein compare
Atu1646 -1.2 -3.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1904 -1.2 -1.8 transcriptional regulator compare
Atu2432 -1.2 -1.5 hypothetical protein compare
Atu6145 -1.2 -6.8 arabinose phosphate phosphatase compare
Atu2578 -1.2 -3.5 cAMP-dependent protein kinase regulatory subunit compare
Atu4451 -1.2 -6.2 mannitol 2-dehydrogenase compare
Atu3755 -1.1 -3.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1127 -1.1 -1.7 molybdopterin converting factor small subunit compare
Atu2239 -1.1 -2.1 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu5464 -1.1 -4.7 IclR family transcriptional regulator compare
Atu4157 -1.1 -8.2 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
Atu2768 -1.1 -3.2 hypothetical protein compare
Atu0298 -1.1 -3.8 orotidine 5 compare
Atu2155 -1.1 -7.3 methionine synthase compare
Atu2532 -1.1 -2.5 transcriptional regulator, MarR family compare
Atu3279 -1.1 -6.9 methanesulfonate sulfonatase compare
Atu3287 -1.1 -4.0 thiamine biosynthesis associated protein compare
Atu1546 -1.1 -4.0 transcriptional regulator, MerR family compare
Atu3337 -1.1 -4.9 LacI family transcriptional regulator compare
Atu1838 -1.1 -3.1 ABC transporter, substrate binding protein (amino acid) compare
Atu0354 -1.1 -1.7 ferric uptake regulator compare
Atu8088 -1.1 -1.4 hypothetical protein compare
Atu4514 -1.1 -2.8 RpiR family transcriptional regulator compare
Atu0979 -1.1 -4.4 two component sensor kinase compare
Atu5075 -1.1 -4.3 GntR family transcriptional regulator compare
Atu4446 -1.1 -5.0 hypothetical protein compare
Atu6165 -1.1 -0.9 hypothetical protein compare
Atu2710 -1.0 -3.6 hypothetical protein compare
Atu0434 -1.0 -1.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0477 -1.0 -1.2 hypothetical protein compare
Atu2125 -1.0 -1.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu2606 -1.0 -3.2 transcriptional regulator, GntR family compare
Atu1686 -1.0 -7.1 peptidyl-prolyl cis-trans isomerse D compare
Atu2205 -1.0 -3.3 transcriptional regulator, MarR family compare
Atu3719 -1.0 -4.7 MutT/nudix family protein compare
Atu4217 -1.0 -1.2 TetR family transcriptional regulator compare
Atu0590 -1.0 -4.1 transcriptional regulator repressor compare
Atu1380 -1.0 -5.3 zinc metallopeptidase compare
Atu1645 -1.0 -3.7 ABC transporter, substrate binding protein compare
Atu1846 -1.0 -1.0 hypothetical protein compare
Atu0981 -1.0 -5.3 glutamate-ammonia-ligase adenylyltransferase compare
Atu4825 -1.0 -4.4 dehydrogenase compare
Atu2183 -1.0 -2.9 lipopolysaccharide core biosynthesis mannosyltransferase compare


Specific Phenotypes

For 12 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms