Experiment set6IT047 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

Br60_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF388 -6.6 -15.3 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF2216 -6.2 -7.4 DNA polymerase I (EC 2.7.7.7) compare
GFF390 -5.2 -3.2 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
GFF3166 -5.0 -3.4 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF391 -4.7 -2.6 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
GFF380 -3.7 -6.8 UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-) compare
GFF392 -3.5 -2.4 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) compare
GFF2389 -3.2 -2.5 Trk system potassium uptake protein TrkA compare
GFF824 -2.8 -5.5 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF2729 -2.4 -1.3 Protein YciE compare
GFF652 -2.4 -2.6 UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) / UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF3888 -2.3 -3.2 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF1032 -2.1 -1.3 DNA polymerase III psi subunit (EC 2.7.7.7) compare
GFF2061 -2.0 -6.6 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
GFF3901 -2.0 -2.6 Phosphomannomutase (EC 5.4.2.8) compare
GFF1076 -1.9 -1.7 Aerobic respiration control protein arcA compare
GFF3461 -1.9 -1.3 hypothetical protein compare
GFF3490 -1.8 -6.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
GFF825 -1.7 -2.5 RNA-binding protein Hfq compare
GFF4634 -1.6 -5.0 Citrate synthase (si) (EC 2.3.3.1) compare
GFF2475 -1.6 -2.4 Ribonuclease III (EC 3.1.26.3) compare
GFF2968 -1.6 -4.1 Stringent starvation protein A compare
GFF2664 -1.5 -2.8 FIG01200701: possible membrane protein compare
GFF1256 -1.5 -4.4 Chromosome (plasmid) partitioning protein ParA compare
GFF3890 -1.5 -1.7 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF180 -1.4 -1.0 FIG01045455: hypothetical protein compare
GFF4145 -1.4 -1.1 hypothetical protein compare
GFF1221 -1.3 -1.7 hypothetical protein compare
GFF3644 -1.3 -1.7 Electron transport complex protein RnfD compare
GFF1641 -1.3 -1.2 hypothetical protein compare
GFF2430 -1.2 -1.5 Ferredoxin, 2Fe-2S compare
GFF4891 -1.2 -4.9 Transport ATP-binding protein CydD compare
GFF4670 -1.2 -2.6 FIG01049225: hypothetical protein compare
GFF4731 -1.2 -2.4 Type III secretion injected virulence protein (YopP,YopJ, induces apoptosis, prevents cytokine induction, inhibits NFkb activation) compare
GFF3748 -1.1 -0.8 FIG002927: hypothetical protein compare
GFF2627 -1.1 -1.3 putative amino acid ABC transporter compare
GFF2469 -1.1 -1.6 Transcriptional regulator, LysR family compare
GFF991 -1.1 -1.3 hypothetical protein compare
GFF4837 -1.1 -4.7 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF4027 -1.1 -1.0 Flagellar biosynthesis protein FliS compare
GFF3320 -1.1 -1.5 Transcriptional regulator CsgD for 2nd curli operon compare
GFF3625 -1.0 -1.6 Transcriptional regulator, TetR family compare
GFF242 -1.0 -1.6 Magnesium and cobalt transport protein CorA compare
GFF3862 -1.0 -1.6 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF1095 -1.0 -0.8 Putative membrane protein compare
GFF633 -1.0 -2.7 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF4087 -1.0 -1.0 Mobile element protein compare
GFF4669 -1.0 -1.7 Phage outer membrane lytic protein Rz; Endopeptidase (EC 3.4.-.-) compare
GFF789 -1.0 -6.1 DNA primase (EC 2.7.7.-), phage-associated compare
GFF387 -1.0 -2.2 Lipopolysaccharide core biosynthesis protein RfaZ compare
GFF3887 -0.9 -3.6 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF3463 -0.9 -1.1 FIG00638667: hypothetical protein compare
GFF3502 -0.9 -0.7 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF1109 -0.9 -1.8 Putative LysR family transcriptional regulator compare
GFF2866 -0.9 -2.1 Phage integrase compare
GFF3602 -0.9 -2.3 Type III secretion cytoplasmic protein (YscL) compare
GFF1521 -0.9 -2.4 rRNA small subunit methyltransferase I compare
GFF4409 -0.9 -4.3 YbbM seven transmembrane helix protein compare
GFF192 -0.9 -3.1 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF4646 -0.9 -3.7 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF341 -0.9 -0.8 RmbA compare
GFF2463 -0.9 -2.2 Hypothetical protein, similar to phosphoserine phosphatase compare
GFF1716 -0.9 -3.5 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF2149 -0.9 -2.8 Malate dehydrogenase (EC 1.1.1.37) compare
GFF816 -0.8 -1.1 Phage tail assembly protein I compare
GFF787 -0.8 -1.7 FIG00642546: hypothetical protein compare
GFF1792 -0.8 -1.3 Spermidine export protein MdtJ compare
GFF4244 -0.8 -0.8 Putative outer membrane lipoprotein compare
GFF3229 -0.8 -1.2 Secreted effector protein compare
GFF4270 -0.8 -0.7 FIG00637869: hypothetical protein compare
GFF2690 -0.8 -0.8 Peptide transport system permease protein SapC compare
GFF2104 -0.8 -1.2 ATP-dependent RNA helicase SrmB compare
GFF2833 -0.8 -1.4 PTS system, mannose-specific IID component (EC 2.7.1.69) compare
GFF3870 -0.8 -2.8 Colanic acid biosynthesis acetyltransferase WcaB (EC 2.3.1.-) compare
GFF2477 -0.8 -3.4 Translation elongation factor LepA compare
GFF190 -0.8 -2.7 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF122 -0.8 -4.4 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF2208 -0.8 -2.8 DNA-damage-inducible protein I compare
GFF2784 -0.8 -1.5 GTP-binding and nucleic acid-binding protein YchF compare
GFF4647 -0.8 -3.1 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF1168 -0.8 -1.4 IncF plasmid conjugative transfer protein TrbI compare
GFF2553 -0.8 -0.9 Osmotically inducible protein C compare
GFF4732 -0.8 -1.2 SPI1-associated transcriptional regulator SprB compare
GFF1634 -0.8 -1.3 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF2492 -0.8 -1.9 Putative transport protein compare
GFF1915 -0.8 -1.8 Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) compare
GFF2991 -0.8 -1.4 Tyrosine recombinase XerD compare
GFF4772 -0.8 -0.8 hypothetical protein compare
GFF632 -0.7 -2.3 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) compare
GFF4060 -0.7 -0.6 putative cytoplasmic protein compare
GFF4062 -0.7 -1.4 Putative cytoplasmic protein USSDB7A compare
GFF4162 -0.7 -1.4 DNA repair protein RecN compare
GFF1435 -0.7 -1.1 Agglutination protein compare
GFF2861 -0.7 -3.3 FIG01045929: hypothetical protein compare
GFF4890 -0.7 -3.3 Transport ATP-binding protein CydC compare
GFF4182 -0.7 -3.2 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF249 -0.7 -0.9 L-lysine permease compare
GFF948 -0.7 -1.9 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF2506 -0.7 -2.2 Multiple antibiotic resistance protein MarA compare
GFF4470 -0.7 -2.1 Putative ATPase involved in DNA repair compare
GFF2869 -0.7 -1.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF3071 -0.7 -1.0 hypothetical protein compare
GFF2698 -0.7 -3.7 Exoribonuclease II (EC 3.1.13.1) compare
GFF788 -0.7 -3.5 ATP-dependent RNA helicase YejH compare
GFF4738 -0.7 -1.1 Type III secretion system protein compare
GFF183 -0.7 -4.5 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
GFF2491 -0.7 -0.9 Putative transport protein compare
GFF2765 -0.7 -2.4 Nitrate/nitrite response regulator protein compare
GFF3550 -0.7 -2.9 Putative transport system permease protein compare
GFF1695 -0.7 -1.5 Cystine ABC transporter, ATP-binding protein compare
GFF4071 -0.7 -1.8 FIG074102: hypothetical protein compare
GFF2515 -0.7 -0.8 putative outer membrane protein compare
GFF1650 -0.7 -2.0 FIG01046209: inner membrane protein compare
GFF4683 -0.7 -1.1 Phage minor tail protein compare
GFF2203 -0.7 -4.4 Origin specific replication initiation factor #replication protein O compare
GFF2537 -0.7 -0.9 hypothetical protein compare
GFF2573 -0.7 -1.3 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF3942 -0.7 -2.5 Propanediol dehydratase reactivation factor large subunit compare
GFF4234 -0.7 -1.0 Possible transmembrane regulator compare
GFF3830 -0.7 -0.5 Uncharacterized protein YehA precursor compare
GFF1074 -0.7 -1.5 putative inner membrane protein compare
GFF4406 -0.7 -1.5 Putative activity regulator of membrane protease YbbK compare
GFF4118 -0.7 -1.0 tRNA-Thr-CGT compare
GFF1865 -0.6 -1.2 Polymyxin resistance protein PmrD compare
GFF3949 -0.6 -1.5 Propanediol utilization transcriptional activator compare
GFF3619 -0.6 -1.5 Superoxide dismutase [Fe] (EC 1.15.1.1) compare
GFF2564 -0.6 -1.4 Gfa-like protein compare
GFF2062 -0.6 -2.1 Predicted outer membrane lipoprotein YfeY compare
GFF2674 -0.6 -1.6 FIG00553873: hypothetical protein compare
GFF4643 -0.6 -0.9 hypothetical protein compare
GFF2621 -0.6 -1.0 FIG01045328: hypothetical protein compare
GFF241 -0.6 -2.8 ATP-dependent DNA helicase UvrD/PcrA compare
GFF156 -0.6 -0.8 rRNA small subunit methyltransferase H compare
GFF2094 -0.6 -1.7 Putative outer membrane lipoprotein compare
GFF2733 -0.6 -1.6 Membrane protein YciC, linked to IspA compare
GFF1090 -0.6 -2.0 Chaperone protein DnaJ compare
GFF4417 -0.6 -1.2 Methionine ABC transporter ATP-binding protein compare
GFF3578 -0.6 -2.5 COG1683: Uncharacterized conserved protein / FIG143828: Hypothetical protein YbgA compare
GFF1156 -0.6 -1.4 IncF plasmid conjugative transfer pilus assembly protein TraL compare
GFF2504 -0.6 -2.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF2954 -0.6 -3.9 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF597 -0.6 -2.0 DNA-damage-inducible protein J compare
GFF2199 -0.6 -1.4 FIG01045596: hypothetical protein compare
GFF4208 -0.6 -0.9 FIG01046757: hypothetical protein compare
GFF2679 -0.6 -2.4 Transcriptional repressor protein TyrR compare
GFF3551 -0.6 -2.0 Putative transport system permease protein compare
GFF1930 -0.6 -1.2 DedD protein compare
GFF3921 -0.6 -1.8 Thiosulfate reductase electron transport protein phsB compare
GFF3042 -0.6 -0.9 hypothetical protein STY3242 compare
GFF1649 -0.6 -2.1 FIG003003: hypothetical protein compare
GFF3608 -0.6 -2.6 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
GFF684 -0.6 -1.3 Putative membrane protein compare
GFF2789 -0.6 -3.2 Ni,Fe-hydrogenase I cytochrome b subunit compare
GFF1040 -0.6 -0.9 Putative deoxyribonuclease YjjV compare
GFF2532 -0.6 -2.5 12-TMS multidrug efflux protein homolog compare
GFF2576 -0.6 -1.6 Putative outer membrane lipoprotein compare
GFF34 -0.6 -1.2 FIG01280259: hypothetical protein compare
GFF1307 -0.6 -0.9 Prepilin peptidase dependent protein A precursor compare
GFF2583 -0.6 -0.6 FIG00638150: hypothetical protein compare
GFF3585 -0.6 -1.6 Secretion system apparatus SsaD compare
GFF3017 -0.6 -2.1 Protein of unknown function DUF541 compare
GFF4839 -0.6 -4.0 BarA sensory histidine kinase (= VarS = GacS) compare
GFF4642 -0.6 -0.6 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
GFF4220 -0.6 -2.1 Glycerol dehydratase reactivation factor large subunit compare
GFF2862 -0.6 -1.0 FIG01046381: hypothetical protein compare
GFF3955 -0.6 -0.8 Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
GFF2529 -0.5 -1.7 L-galactonate dehydrogenase (EC 1.1.1.-) compare
GFF539 -0.5 -1.4 Putative inner membrane protein compare
GFF2505 -0.5 -0.8 Multiple antibiotic resistance protein MarB compare
GFF664 -0.5 -1.6 Formiminoglutamase (EC 3.5.3.8) compare
GFF2832 -0.5 -0.9 PTS system, mannose-specific IIC component (EC 2.7.1.69) compare
GFF663 -0.5 -2.0 Imidazolonepropionase (EC 3.5.2.7) compare
GFF4523 -0.5 -1.3 Ribonuclease I precursor (EC 3.1.27.6) compare
GFF1433 -0.5 -1.0 Putative inner membrane or exported protein compare
GFF2824 -0.5 -1.1 RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein compare
GFF2704 -0.5 -1.1 'Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)' transl_table=11 compare
GFF829 -0.5 -0.6 Putative inner membrane protein YjeT (clustered with HflC) compare
GFF1652 -0.5 -1.7 tRNA (5-methoxyuridine) 34 synthase compare
GFF1414 -0.5 -0.9 hypothetical protein compare
GFF109 -0.5 -1.3 DeoR family transcriptional regulator probably related to glycerate, glycolaldehyde metabolism compare
GFF736 -0.5 -0.7 Electron transfer flavoprotein, alpha subunit compare
GFF296 -0.5 -3.3 Multidrug resistance protein D compare
GFF2868 -0.5 -0.8 hypothetical protein compare
GFF3632 -0.5 -1.1 Transcriptional regulator SlyA compare
GFF3917 -0.5 -1.8 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF631 -0.5 -2.7 DamX, an inner membrane protein involved in bile resistance compare
GFF3613 -0.5 -2.2 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps compare
GFF2512 -0.5 -1.6 Glutaminase (EC 3.5.1.2) compare
GFF4350 -0.5 -0.4 hypothetical protein compare
GFF1685 -0.5 -0.7 FIG01045540: hypothetical protein compare
GFF4408 -0.5 -1.7 YbbL ABC transporter ATP-binding protein compare
GFF4462 -0.5 -1.3 Bactoprenol-linked glucose translocase compare
GFF1610 -0.5 -0.6 hypothetical protein compare
GFF3397 -0.5 -2.8 Transcription-repair coupling factor compare
GFF3592 -0.5 -2.2 Secretion system effector SseE compare
GFF4745 -0.5 -0.6 secretion chaparone compare
GFF4892 -0.5 -1.5 Thioredoxin reductase (EC 1.8.1.9) compare
GFF2791 -0.5 -1.7 Hydrogenase maturation factor hoxO compare
GFF680 -0.5 -2.0 Molybdenum cofactor biosynthesis protein MoaC compare
GFF4784 -0.5 -0.9 Transcriptional regulator, MarR family compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage Br60_phage across organisms