Experiment set6IT047 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu2036 -5.6 -12.0 acetolactate synthase III, large subunit compare
Atu1588 -4.6 -9.2 homoserine dehydrogenase compare
Atu3908 -4.0 -14.2 GntR family transcriptional regulator compare
Atu0030 -3.6 -1.9 phosphocarrier protein HPr compare
Atu1359 -3.5 -1.3 dnaK deletion suppressor protein compare
Atu0678 -3.5 -8.3 histidyl-tRNA synthetase compare
Atu2728 -3.4 -2.4 beta (1-->2) glucan export ATP-binding protein compare
Atu3707 -3.4 -4.0 phosphoserine aminotransferase compare
Atu1205 -3.1 -14.8 threonine dehydratase compare
Atu0039 -3.1 -3.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu0679 -3.0 -7.7 ATP phosphoribosyltransferase compare
Atu1030 -3.0 -1.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0971 -2.9 -4.4 two component sensor kinase compare
Atu0331 -2.9 -3.2 sigma-54 modulation protein compare
Atu1687 -2.8 -8.7 anthranilate phosphoribosyltransferase compare
Atu3754 -2.8 -5.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0723 -2.8 -1.9 FAD dependent oxidoreductase compare
Atu3763 -2.7 -2.5 hypothetical protein compare
Atu4166 -2.7 -2.6 UDP-glucose 4-epimerase compare
Atu1844 -2.7 -4.4 Phosphoribosylformylglycinamidine synthetase compare
Atu4711 -2.6 -8.0 two component sensor kinase compare
Atu1140 -2.6 -5.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3755 -2.6 -5.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1364 -2.6 -7.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1750 -2.6 -5.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu8167 -2.6 -11.0 putative transmembrane protein compare
Atu2289 -2.5 -15.2 anthranilate synthase component I and II compare
Atu1219 -2.5 -1.2 hypothetical protein compare
Atu0399 -2.5 -7.1 dihydroorotase compare
Atu1850 -2.5 -4.3 phosphoribosylformylglycinamidine synthetase II compare
Atu0043 -2.4 -2.3 imidazoleglycerol-phosphate dehydratase compare
Atu1845 -2.4 -4.2 phosphoribosylformylglycinamidine synthase I compare
Atu1417 -2.4 -4.3 enoyl-CoA hydratase compare
Atu4055 -2.4 -7.0 endo-1,3-1,4-beta-glycanase compare
Atu3706 -2.3 -8.6 D-3-phosphoglycerate dehydrogenase compare
Atu0537 -2.3 -7.6 histidinol dehydrogenase compare
Atu3739 -2.3 -3.5 phosphoglycerate kinase compare
Atu0040 -2.3 -1.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2057 -2.3 -3.7 DNA helicase II compare
Atu1447 -2.2 -2.4 two component sensor kinase compare
Atu0062 -2.2 -8.9 transcriptional regulator, ROK family compare
Atu2439 -2.2 -1.3 hypothetical protein compare
Atu4217 -2.2 -2.2 TetR family transcriptional regulator compare
Atu1705 -2.1 -6.2 SEC-independent protein translocase protein compare
Atu0041 -2.1 -2.7 glutamine amidotransferase compare
Atu0038 -2.1 -3.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2207 -2.1 -3.9 two component sensor kinase compare
Atu0361 -2.1 -3.6 transcriptional regulator compare
Atu0486 -2.1 -4.3 dihydroorotate dehydrogenase compare
Atu1688 -2.1 -6.7 indole-3-glycerol-phosphate synthase compare
Atu4317 -2.0 -4.3 TetR family transcriptional regulator compare
Atu0647 -2.0 -7.6 phosphoribosylamine--glycine ligase compare
Atu1874 -2.0 -3.3 RecA protein compare
Atu1422 -2.0 -8.8 transcriptional regulator, MarR family compare
Atu0422 -2.0 -2.8 ABC transporter, membrane spanning protein compare
Atu3311 -2.0 -11.8 phosphomannose isomerase compare
Atu0769 -2.0 -2.4 protoheme IX farnesyltransferase compare
Atu0977 -1.9 -3.3 serine protease DO-like protease compare
Atu1075 -1.8 -3.9 amidophosphoribosyltransferase compare
Atu1141 -1.8 -5.6 Phosphoribosylglycinamide synthetase compare
Atu1163 -1.8 -2.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2718 -1.8 -6.0 homoserine O-succinyltransferase compare
Atu0401 -1.8 -7.9 fructokinase compare
Atu0142 -1.8 -2.5 cytochrome o ubiquinol oxidase subunit II compare
Atu0093 -1.8 -5.6 Recombination protein compare
Atu0141 -1.8 -2.2 cytochrome O ubiquinol oxidase subunit I compare
Atu3468 -1.8 -1.1 hypothetical protein compare
Atu2650 -1.8 -9.8 glycerol-3-phosphate dehydrogenase compare
Atu2239 -1.7 -3.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1354 -1.7 -1.4 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2522 -1.7 -8.4 agrobacterium chromosomal virulence protein B compare
Atu0400 -1.7 -5.2 orotate phosphoribosyltransferase compare
Atu4610 -1.7 -8.3 sugar nucleotide epimerase/dehydratase compare
Atu2040 -1.7 -5.6 phosphoserine phosphatase compare
Atu6098 -1.7 -0.8 transcriptional regulator, HTH family compare
Atu0421 -1.6 -1.7 ABC transporter, membrane spanning protein compare
Atu4072 -1.6 -2.2 nodulation protein N compare
Atu0298 -1.6 -5.8 orotidine 5 compare
Atu6019 -1.6 -11.2 D-nopaline dehydrogenase compare
Atu0354 -1.6 -2.1 ferric uptake regulator compare
Atu1902 -1.6 -6.3 transketolase compare
Atu2464 -1.6 -2.8 formyltetrahydrofolate deformylase compare
Atu2791 -1.6 -5.8 3-isopropylmalate dehydrogenase compare
Atu4773 -1.6 -1.8 two component response regulator compare
Atu3469 -1.6 -3.7 phosphoglyceromutase compare
Atu1646 -1.6 -3.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu0784 -1.6 -3.9 hypothetical protein compare
Atu0031 -1.5 -1.5 PTS system, IIA component compare
Atu4614 -1.5 -5.5 glycosyltransferase compare
Atu2264 -1.5 -7.7 2-isopropylmalate synthase compare
Atu2193 -1.5 -1.3 hypothetical protein compare
Atu1620 -1.5 -8.4 triosephosphate isomerase compare
Atu1308 -1.5 -5.5 aspartate carbamoyl transferase catalytic subunit compare
Atu2052 -1.5 -6.1 hypothetical protein compare
Atu2662 -1.5 -1.8 acetyltransferase compare
Atu3485 -1.5 -7.3 short chain dehydrogenase compare
Atu6021 -1.5 -8.7 D-nopaline dehydrogenase compare
Atu6131 -1.5 -4.7 TraR Antiactivator compare
Atu4514 -1.5 -3.9 RpiR family transcriptional regulator compare
Atu1647 -1.5 -5.9 ABC transporter, membrane spanning protein compare
Atu5160 -1.5 -3.5 transcriptional regulator protein compare
Atu1039 -1.4 -4.1 DNA repair protein RecO compare
Atu2083 -1.4 -3.6 DNA repair protein RecN compare
Atu2709 -1.4 -8.7 3-isopropylmalate dehydratase, large subunit compare
Atu1645 -1.4 -6.4 ABC transporter, substrate binding protein compare
Atu2183 -1.4 -5.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0086 -1.4 -1.2 ribosome-binding factor A compare
Atu1129 -1.4 -5.3 excinuclease ABC chain C compare
Atu4618 -1.4 -7.1 dTDP-rhamnose-3,5-epimerase compare
Atu3963 -1.4 -5.9 GntR family transcriptional regulator compare
Atu0153 -1.4 -3.6 transcriptional regulator, Fur family compare
Atu0017 -1.4 -3.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu5125 -1.4 -4.3 GntR family transcriptional regulator compare
Atu2238 -1.4 -6.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3353 -1.4 -7.3 mannose-1-phosphate guanylyltransferase compare
Atu0269 -1.4 -3.6 exodeoxyribonuclease VII large subunit compare
Atu0099 -1.3 -5.7 prephenate dehydratase compare
Atu0703 -1.3 -2.1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0434 -1.3 -2.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2824 -1.3 -4.5 hypothetical protein compare
Atu4346 -1.3 -3.0 hypothetical protein compare
Atu1535 -1.3 -1.8 cytochrome c oxidase, FixQ chain compare
Atu2684 -1.3 -2.0 hypothetical protein compare
Atu0876 -1.3 -2.1 superoxide dismutase compare
Atu0073 -1.3 -4.4 recF-like protein compare
Atu4685 -1.3 -4.6 LacI family transcriptional regulator compare
Atu2555 -1.2 -3.0 L-lysine 2,3-aminomutase compare
Atu3598 -1.2 -1.4 thiol:disulfide interchange protein compare
Atu1307 -1.2 -4.3 dihydroorotase compare
Atu0976 -1.2 -2.0 cycL protein compare
Atu1810 -1.2 -1.2 hypothetical protein compare
Atu3219 -1.2 -7.5 dihydroxy-acid dehydratase compare
Atu3885 -1.2 -4.0 inositol monophosphatase compare
Atu2237 -1.2 -2.9 cytochrome c1 compare
Atu0432 -1.2 -6.8 O-succinylhomoserine sulfhydrylase compare
Atu1803 -1.2 -5.6 cold shock protein compare
Atu1074 -1.2 -6.3 NAD/NADP dependent oxidoreductase compare
Atu2379 -1.2 -5.8 phosphomannomutase compare
Atu4446 -1.1 -6.5 hypothetical protein compare
Atu0029 -1.1 -4.0 S-adenosylhomocysteine hydrolase compare
Atu1644 -1.1 -2.6 hypothetical protein compare
Atu1077 -1.1 -3.4 DNA repair protein compare
Atu1530 -1.1 -7.2 nitrogen fixation protein FixG compare
Atu2115 -1.1 -5.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu6020 -1.1 -4.3 conserved hypothetical protein compare
Atu2376 -1.1 -2.7 hypothetical protein compare
Atu1344 -1.1 -1.7 hypothetical protein compare
Atu0923 -1.1 -5.8 hypothetical protein compare
Atu2790 -1.1 -1.7 3-isopropylmalate dehydratase, small subunit compare
Atu2730 -1.1 -7.3 beta (1-->2) glucan biosynthesis protein compare
Atu0973 -1.1 -4.1 cycH protein compare
Atu1026 -1.1 -2.5 hypothetical protein compare
Atu1602 -1.0 -4.1 transcriptional activator, Crp family compare
Atu1528 -1.0 -7.7 nitrogen fixation protein FixI compare
Atu5464 -1.0 -5.8 IclR family transcriptional regulator compare
Atu4617 -1.0 -5.5 dTDP-D-glucose-4,6-dehydratase compare
Atu1780 -1.0 -5.3 ATP-dependent DNA helicase compare
Atu0190 -1.0 -4.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1527 -1.0 -3.6 nitrogen fixation protein FixS compare
Atu3740 -1.0 -5.6 fructose bisphosphate aldolase compare
Atu0025 -1.0 -1.7 hypothetical protein compare
Atu3147 -1.0 -5.9 oxidoreductase compare
Atu1566 -1.0 -1.2 hypothetical protein compare
Atu1466 -1.0 -0.9 hypothetical protein compare
Atu1629 -1.0 -1.0 transcriptional regulator, ArsR family compare
Atu4613 -1.0 -6.2 glycosyltransferase compare
Atu0499 -1.0 -4.9 hypothetical protein compare
Atu1380 -1.0 -3.4 zinc metallopeptidase compare
Atu3337 -1.0 -4.6 LacI family transcriptional regulator compare
Atu4418 -1.0 -2.2 glutaryl-CoA dehydrogenase compare
Atu2640 -1.0 -2.9 hypothetical protein compare
Atu6145 -1.0 -6.1 arabinose phosphate phosphatase compare
Atu3663 -1.0 -1.1 hypothetical protein compare
Atu3750 -1.0 -1.9 thiamine-phosphate pyrophosphorylase compare
Atu0189 -0.9 -2.3 ABC transporter, membrane spanning protein (peptide) compare
Atu2532 -0.9 -3.0 transcriptional regulator, MarR family compare
Atu4451 -0.9 -5.9 mannitol 2-dehydrogenase compare
Atu1904 -0.9 -2.6 transcriptional regulator compare
Atu3971 -0.9 -5.6 dihydroxy-acid dehydratase compare
Atu0205 -0.9 -6.0 methylmalonate-semialdehyde dehydrogenase compare
Atu8159 -0.9 -1.9 hypothetical protein compare
Atu0163 -0.9 -3.7 tonB protein compare
Atu2113 -0.9 -2.4 N-acetylmuramoyl-L-alanine amidase compare
Atu1513 -0.9 -3.2 ABC excinuclease subunit A compare
Atu0188 -0.9 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu1683 -0.9 -1.6 hypothetical protein compare
Atu5540 -0.9 -0.8 hypothetical protein compare
Atu0660 -0.9 -3.0 hydrolase compare
Atu0477 -0.9 -1.5 hypothetical protein compare
Atu1339 -0.9 -2.3 ribonuclease E compare
Atu3691 -0.9 -4.5 iron (III) dicitrate ABC transporter ATPase compare
Atu0630 -0.9 -1.8 hypothetical protein compare
Atu0981 -0.9 -5.3 glutamate-ammonia-ligase adenylyltransferase compare
Atu1537 -0.8 -5.0 cytochrome-c oxidase, FixN chain compare
Atu2184 -0.8 -2.6 transcriptional regulator, AsnC family compare
Atu0978 -0.8 -4.3 two component response regulator compare
Atu2200 -0.8 -1.7 cold shock protein compare
Atu2068 -0.8 -2.3 hypothetical protein compare
Atu4615 -0.8 -3.8 glucose-1-phosphate thymidylyltransferase compare
Atu0101 -0.8 -2.9 cytochrome c compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms