Experiment set6IT045 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu2289 -6.6 -10.2 anthranilate synthase component I and II compare
Atu2036 -6.3 -4.4 acetolactate synthase III, large subunit compare
Atu1687 -6.2 -8.5 anthranilate phosphoribosyltransferase compare
Atu1588 -5.9 -5.7 homoserine dehydrogenase compare
Atu1750 -5.8 -4.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu3908 -5.7 -9.5 GntR family transcriptional regulator compare
Atu1205 -5.5 -11.7 threonine dehydratase compare
Atu1688 -5.4 -3.7 indole-3-glycerol-phosphate synthase compare
Atu0537 -5.2 -3.6 histidinol dehydrogenase compare
Atu0678 -5.2 -5.1 histidyl-tRNA synthetase compare
Atu0679 -5.2 -7.1 ATP phosphoribosyltransferase compare
Atu0030 -5.1 -1.6 phosphocarrier protein HPr compare
Atu3707 -4.8 -3.3 phosphoserine aminotransferase compare
Atu0043 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu0038 -4.8 -5.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1874 -4.6 -3.2 RecA protein compare
Atu2040 -4.2 -6.4 phosphoserine phosphatase compare
Atu1129 -4.1 -9.9 excinuclease ABC chain C compare
Atu3468 -3.9 -1.2 hypothetical protein compare
Atu3912 -3.9 -8.6 hypothetical protein compare
Atu0769 -3.9 -2.5 protoheme IX farnesyltransferase compare
Atu0093 -3.9 -5.3 Recombination protein compare
Atu3910 -3.9 -4.6 LamB/YcsF family protein compare
Atu2684 -3.8 -2.9 hypothetical protein compare
Atu4055 -3.8 -7.2 endo-1,3-1,4-beta-glycanase compare
Atu0017 -3.8 -4.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2200 -3.7 -3.6 cold shock protein compare
Atu3885 -3.7 -10.1 inositol monophosphatase compare
Atu0039 -3.7 -2.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu3730 -3.7 -2.0 hypothetical protein compare
Atu2264 -3.6 -15.0 2-isopropylmalate synthase compare
Atu3706 -3.6 -9.4 D-3-phosphoglycerate dehydrogenase compare
Atu0971 -3.5 -2.4 two component sensor kinase compare
Atu1359 -3.5 -1.1 dnaK deletion suppressor protein compare
Atu2083 -3.4 -4.6 DNA repair protein RecN compare
Atu2728 -3.4 -2.4 beta (1-->2) glucan export ATP-binding protein compare
Atu3754 -3.4 -5.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2709 -3.4 -19.2 3-isopropylmalate dehydratase, large subunit compare
Atu2439 -3.3 -1.4 hypothetical protein compare
Atu1327 -3.3 -3.2 NADH-ubiquinone oxidoreductase compare
Atu3913 -3.3 -7.1 biotin carboxylase compare
Atu6098 -3.2 -1.0 transcriptional regulator, HTH family compare
Atu4166 -3.2 -2.4 UDP-glucose 4-epimerase compare
Atu3755 -3.1 -6.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0977 -3.1 -6.1 serine protease DO-like protease compare
Atu3763 -3.0 -2.6 hypothetical protein compare
Atu0041 -3.0 -2.7 glutamine amidotransferase compare
Atu1077 -3.0 -5.1 DNA repair protein compare
Atu3469 -3.0 -3.8 phosphoglyceromutase compare
Atu0269 -2.9 -5.5 exodeoxyribonuclease VII large subunit compare
Atu1030 -2.9 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0073 -2.9 -6.3 recF-like protein compare
Atu2791 -2.8 -7.9 3-isopropylmalate dehydrogenase compare
Atu0026 -2.8 -1.2 hypothetical protein compare
Atu2648 -2.7 -3.9 hypothetical protein compare
Atu0331 -2.7 -3.4 sigma-54 modulation protein compare
Atu1039 -2.7 -2.5 DNA repair protein RecO compare
Atu1364 -2.7 -6.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1513 -2.7 -7.1 ABC excinuclease subunit A compare
Atu1705 -2.7 -4.7 SEC-independent protein translocase protein compare
Atu1417 -2.7 -7.1 enoyl-CoA hydratase compare
Atu2379 -2.6 -9.4 phosphomannomutase compare
Atu3219 -2.6 -10.8 dihydroxy-acid dehydratase compare
Atu2057 -2.5 -4.1 DNA helicase II compare
Atu1141 -2.5 -6.2 Phosphoribosylglycinamide synthetase compare
Atu3311 -2.5 -13.9 phosphomannose isomerase compare
Atu0422 -2.5 -2.5 ABC transporter, membrane spanning protein compare
Atu3353 -2.5 -10.6 mannose-1-phosphate guanylyltransferase compare
Atu4346 -2.5 -4.6 hypothetical protein compare
Atu8167 -2.4 -10.4 putative transmembrane protein compare
Atu0647 -2.4 -6.5 phosphoribosylamine--glycine ligase compare
Atu6019 -2.4 -15.1 D-nopaline dehydrogenase compare
Atu2718 -2.4 -7.0 homoserine O-succinyltransferase compare
Atu0401 -2.4 -5.0 fructokinase compare
Atu0086 -2.4 -1.5 ribosome-binding factor A compare
Atu6021 -2.3 -11.9 D-nopaline dehydrogenase compare
Atu0040 -2.3 -1.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3712 -2.2 -1.5 hypothetical protein compare
Atu0399 -2.2 -6.2 dihydroorotase compare
Atu4773 -2.2 -1.9 two component response regulator compare
Atu1644 -2.1 -2.5 hypothetical protein compare
Atu6131 -2.1 -4.0 TraR Antiactivator compare
Atu2790 -2.1 -1.7 3-isopropylmalate dehydratase, small subunit compare
Atu0029 -2.1 -5.7 S-adenosylhomocysteine hydrolase compare
Atu1646 -2.1 -4.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu1844 -2.1 -2.3 Phosphoribosylformylglycinamidine synthetase compare
Atu2650 -2.1 -9.5 glycerol-3-phosphate dehydrogenase compare
Atu4610 -2.1 -9.5 sugar nucleotide epimerase/dehydratase compare
Atu2052 -2.0 -6.9 hypothetical protein compare
Atu1810 -2.0 -1.2 hypothetical protein compare
Atu1163 -2.0 -1.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0099 -2.0 -5.4 prephenate dehydratase compare
Atu4514 -2.0 -3.5 RpiR family transcriptional regulator compare
Atu3963 -2.0 -7.2 GntR family transcriptional regulator compare
Atu2585 -2.0 -6.1 hypothetical protein compare
Atu4711 -1.9 -3.7 two component sensor kinase compare
Atu1470 -1.9 -1.1 Camphor resistance protein compare
Atu6189 -1.9 -1.8 protein secretion chaperone compare
Atu0978 -1.9 -6.8 two component response regulator compare
Atu1845 -1.8 -4.9 phosphoribosylformylglycinamidine synthase I compare
Atu3971 -1.8 -9.8 dihydroxy-acid dehydratase compare
Atu0432 -1.8 -6.2 O-succinylhomoserine sulfhydrylase compare
Atu4317 -1.8 -3.1 TetR family transcriptional regulator compare
Atu1647 -1.8 -6.4 ABC transporter, membrane spanning protein compare
Atu0660 -1.8 -6.3 hydrolase compare
Atu2183 -1.7 -5.8 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1307 -1.7 -5.2 dihydroorotase compare
Atu1904 -1.7 -3.8 transcriptional regulator compare
Atu5125 -1.7 -4.9 GntR family transcriptional regulator compare
Atu0050 -1.7 -3.8 two component response regulator compare
Atu2207 -1.7 -2.5 two component sensor kinase compare
Atu4217 -1.7 -1.7 TetR family transcriptional regulator compare
Atu1140 -1.7 -3.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4616 -1.7 -2.1 dTDP-4-dehydrorhamnose reductase compare
Atu2464 -1.7 -3.0 formyltetrahydrofolate deformylase compare
Atu0062 -1.7 -6.1 transcriptional regulator, ROK family compare
Atu1075 -1.7 -4.0 amidophosphoribosyltransferase compare
Atu1714 -1.7 -1.5 exonuclease III compare
Atu3337 -1.6 -6.2 LacI family transcriptional regulator compare
Atu0036 -1.6 -2.6 hypothetical protein compare
Atu0979 -1.6 -6.5 two component sensor kinase compare
Atu4532 -1.6 -5.2 shikimate 5-dehydrogenase compare
Atu1422 -1.6 -8.2 transcriptional regulator, MarR family compare
Atu6020 -1.6 -4.8 conserved hypothetical protein compare
Atu3663 -1.6 -0.9 hypothetical protein compare
Atu2522 -1.6 -7.9 agrobacterium chromosomal virulence protein B compare
Atu4685 -1.6 -5.9 LacI family transcriptional regulator compare
Atu2532 -1.6 -2.7 transcriptional regulator, MarR family compare
Atu0400 -1.5 -3.7 orotate phosphoribosyltransferase compare
Atu5464 -1.5 -7.7 IclR family transcriptional regulator compare
Atu1354 -1.5 -1.3 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0434 -1.5 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1589 -1.5 -3.4 aminotransferase, class I compare
Atu0184 -1.5 -2.4 glucokinase compare
Atu0499 -1.5 -6.2 hypothetical protein compare
Atu1850 -1.5 -1.9 phosphoribosylformylglycinamidine synthetase II compare
Atu3739 -1.5 -1.7 phosphoglycerate kinase compare
Atu0923 -1.5 -4.9 hypothetical protein compare
Atu0687 -1.4 -1.7 hypothetical protein compare
Atu2730 -1.4 -8.7 beta (1-->2) glucan biosynthesis protein compare
Atu0205 -1.4 -7.6 methylmalonate-semialdehyde dehydrogenase compare
Atu1225 -1.4 -1.2 hypothetical protein compare
Atu2192 -1.4 -1.3 hypothetical protein compare
Atu2237 -1.4 -4.7 cytochrome c1 compare
Atu1708 -1.4 -5.1 hypothetical protein compare
Atu5160 -1.4 -3.3 transcriptional regulator protein compare
Atu0101 -1.4 -3.4 cytochrome c compare
Atu2606 -1.4 -3.3 transcriptional regulator, GntR family compare
Atu2592 -1.4 -4.5 hypothetical protein compare
Atu0638 -1.3 -1.9 hypothetical protein compare
Atu1251 -1.3 -5.8 O-acetylhomoserine sulfhydrylase compare
Atu1308 -1.3 -4.2 aspartate carbamoyl transferase catalytic subunit compare
Atu2554 -1.3 -1.8 lysyl-tRNA synthetase compare
Atu0361 -1.3 -1.8 transcriptional regulator compare
Atu1838 -1.3 -3.6 ABC transporter, substrate binding protein (amino acid) compare
Atu0291 -1.3 -6.1 hypothetical protein compare
Atu0566 -1.3 -1.6 hypothetical protein compare
Atu0801 -1.3 -7.7 chromosome segregation protein compare
Atu0661 -1.3 -5.8 glycosyltransferase compare
Atu8118 -1.3 -5.8 putative universal stress protein compare
Atu4157 -1.3 -9.0 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
Atu1242 -1.3 -6.9 cytochrome oxidase assembly factor compare
Atu4641 -1.3 -2.5 LysR family transcriptional regulator compare
Atu3999 -1.3 -2.0 dithiobiotin synthetase compare
Atu0188 -1.3 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu4702 -1.2 -5.9 GntR family transcriptional regulator compare
Atu0142 -1.2 -1.7 cytochrome o ubiquinol oxidase subunit II compare
Atu1645 -1.2 -4.6 ABC transporter, substrate binding protein compare
Atu1447 -1.2 -1.4 two component sensor kinase compare
Atu1592 -1.2 -3.0 hypothetical protein compare
Atu2001 -1.2 -3.5 excinuclease ABC subunit B compare
Atu2590 -1.2 -4.9 hypothetical protein compare
Atu2201 -1.2 -2.5 hydrolase compare
Atu0354 -1.2 -1.7 ferric uptake regulator compare
Atu0201 -1.2 -1.6 hypothetical protein compare
Atu4882 -1.2 -1.6 hypothetical protein compare
Atu1566 -1.2 -1.2 hypothetical protein compare
Atu1902 -1.2 -3.8 transketolase compare
Atu1818 -1.2 -1.2 hypothetical protein compare
Atu2800 -1.2 -3.2 precorrin-3B C17-methyltransferase compare
Atu1683 -1.2 -1.7 hypothetical protein compare
Atu8177 -1.2 -3.6 hypothetical protein compare
Atu0419 -1.2 -1.4 two component sensor kinase compare
Atu3485 -1.2 -6.4 short chain dehydrogenase compare
Atu2809 -1.2 -4.3 cobalamin biosynthesis protein compare
Atu4530 -1.2 -3.4 TetR family transcriptional regulator compare
Atu0298 -1.2 -4.8 orotidine 5 compare
Atu1578 -1.1 -4.4 ABC transporter, membrane spanning protein (amino acid) compare
Atu4149 -1.1 -6.1 UDP-glucose 6-dehydrogenase compare
Atu8159 -1.1 -2.1 hypothetical protein compare
Atu3348 -1.1 -4.2 hypothetical protein compare
Atu4451 -1.1 -5.7 mannitol 2-dehydrogenase compare
Atu1518 -1.1 -2.2 transcriptional regulator, Fur family compare
Atu2286 -1.1 -1.0 hypothetical protein compare
Atu0981 -1.1 -5.7 glutamate-ammonia-ligase adenylyltransferase compare
Atu4540 -1.1 -1.9 protocatechuate 3,4-dioxygenase subunit beta compare
Atu3579 -1.1 -2.4 lactoylglutathione lyase compare
Atu1686 -1.1 -7.3 peptidyl-prolyl cis-trans isomerse D compare
Atu6150 -1.1 -6.4 P-450 monooxygenase compare
Atu1580 -1.1 -5.5 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare


Specific Phenotypes

For 13 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms