Experiment set6IT044 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

200 most important genes:

  gene name fitness t score description  
Atu2036 -5.7 -11.5 acetolactate synthase III, large subunit compare
Atu1874 -4.9 -3.4 RecA protein compare
Atu3908 -4.3 -13.9 GntR family transcriptional regulator compare
Atu1588 -4.2 -10.8 homoserine dehydrogenase compare
Atu0039 -3.8 -2.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1422 -3.7 -11.1 transcriptional regulator, MarR family compare
Atu1359 -3.6 -1.3 dnaK deletion suppressor protein compare
Atu0679 -3.5 -6.3 ATP phosphoribosyltransferase compare
Atu2728 -3.5 -2.4 beta (1-->2) glucan export ATP-binding protein compare
Atu1417 -3.4 -9.1 enoyl-CoA hydratase compare
Atu4773 -3.4 -2.5 two component response regulator compare
Atu3707 -3.4 -4.4 phosphoserine aminotransferase compare
Atu4711 -3.4 -9.0 two component sensor kinase compare
Atu2439 -3.4 -1.7 hypothetical protein compare
Atu1850 -3.3 -5.2 phosphoribosylformylglycinamidine synthetase II compare
Atu0043 -3.3 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu3763 -3.2 -2.4 hypothetical protein compare
Atu4055 -3.0 -8.0 endo-1,3-1,4-beta-glycanase compare
Atu1030 -3.0 -1.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1750 -2.9 -7.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu0678 -2.8 -5.8 histidyl-tRNA synthetase compare
Atu4166 -2.8 -2.4 UDP-glucose 4-epimerase compare
Atu1688 -2.7 -7.0 indole-3-glycerol-phosphate synthase compare
Atu1364 -2.7 -7.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1075 -2.7 -7.6 amidophosphoribosyltransferase compare
Atu1163 -2.7 -2.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1141 -2.6 -9.2 Phosphoribosylglycinamide synthetase compare
Atu0769 -2.6 -2.8 protoheme IX farnesyltransferase compare
Atu3754 -2.6 -8.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2684 -2.5 -3.0 hypothetical protein compare
Atu0537 -2.5 -7.4 histidinol dehydrogenase compare
Atu2650 -2.4 -10.7 glycerol-3-phosphate dehydrogenase compare
Atu2057 -2.4 -3.9 DNA helicase II compare
Atu2289 -2.4 -13.4 anthranilate synthase component I and II compare
Atu0040 -2.3 -1.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3755 -2.3 -5.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2522 -2.3 -13.1 agrobacterium chromosomal virulence protein B compare
Atu1140 -2.3 -4.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0647 -2.2 -7.8 phosphoribosylamine--glycine ligase compare
Atu3706 -2.2 -8.5 D-3-phosphoglycerate dehydrogenase compare
Atu0041 -2.2 -2.1 glutamine amidotransferase compare
Atu0038 -2.2 -3.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0298 -2.2 -8.5 orotidine 5 compare
Atu0399 -2.2 -8.3 dihydroorotase compare
Atu0486 -2.1 -5.8 dihydroorotate dehydrogenase compare
Atu0153 -2.1 -5.2 transcriptional regulator, Fur family compare
Atu1687 -2.1 -7.4 anthranilate phosphoribosyltransferase compare
Atu0977 -2.1 -2.9 serine protease DO-like protease compare
Atu1844 -2.0 -3.6 Phosphoribosylformylglycinamidine synthetase compare
Atu1205 -2.0 -11.7 threonine dehydratase compare
Atu1513 -2.0 -6.1 ABC excinuclease subunit A compare
Atu6021 -2.0 -12.1 D-nopaline dehydrogenase compare
Atu0141 -2.0 -1.7 cytochrome O ubiquinol oxidase subunit I compare
Atu0030 -2.0 -1.7 phosphocarrier protein HPr compare
Atu2183 -2.0 -8.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3311 -1.9 -12.2 phosphomannose isomerase compare
Atu0400 -1.9 -3.3 orotate phosphoribosyltransferase compare
Atu1028 -1.9 -2.0 hypothetical protein compare
Atu2193 -1.9 -1.5 hypothetical protein compare
Atu0086 -1.8 -1.6 ribosome-binding factor A compare
Atu1308 -1.8 -5.4 aspartate carbamoyl transferase catalytic subunit compare
Atu2824 -1.8 -5.5 hypothetical protein compare
Atu1705 -1.8 -5.6 SEC-independent protein translocase protein compare
Atu4617 -1.8 -10.1 dTDP-D-glucose-4,6-dehydratase compare
Atu0499 -1.8 -8.7 hypothetical protein compare
Atu0017 -1.8 -3.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu6020 -1.8 -7.0 conserved hypothetical protein compare
Atu8167 -1.8 -9.8 putative transmembrane protein compare
Atu1129 -1.8 -8.2 excinuclease ABC chain C compare
Atu3730 -1.7 -1.5 hypothetical protein compare
Atu2083 -1.7 -5.0 DNA repair protein RecN compare
Atu1644 -1.7 -3.7 hypothetical protein compare
Atu0073 -1.7 -7.3 recF-like protein compare
Atu6019 -1.7 -12.3 D-nopaline dehydrogenase compare
Atu2052 -1.6 -6.5 hypothetical protein compare
Atu8052 -1.6 -2.4 hypothetical protein compare
Atu4346 -1.6 -5.5 hypothetical protein compare
Atu0269 -1.6 -4.6 exodeoxyribonuclease VII large subunit compare
Atu8138 -1.6 -2.0 hypothetical protein compare
Atu3353 -1.5 -6.9 mannose-1-phosphate guanylyltransferase compare
Atu0093 -1.5 -5.1 Recombination protein compare
Atu4618 -1.5 -8.8 dTDP-rhamnose-3,5-epimerase compare
Atu4616 -1.5 -2.3 dTDP-4-dehydrorhamnose reductase compare
Atu0976 -1.5 -3.3 cycL protein compare
Atu2662 -1.5 -1.7 acetyltransferase compare
Atu1447 -1.5 -1.7 two component sensor kinase compare
Atu0421 -1.5 -1.6 ABC transporter, membrane spanning protein compare
Atu4072 -1.5 -2.1 nodulation protein N compare
Atu2207 -1.5 -3.2 two component sensor kinase compare
Atu1039 -1.4 -4.5 DNA repair protein RecO compare
Atu0971 -1.4 -3.8 two component sensor kinase compare
Atu2040 -1.4 -5.0 phosphoserine phosphatase compare
Atu1647 -1.4 -4.7 ABC transporter, membrane spanning protein compare
Atu0142 -1.4 -2.4 cytochrome o ubiquinol oxidase subunit II compare
Atu0784 -1.4 -3.8 hypothetical protein compare
Atu0422 -1.4 -1.5 ABC transporter, membrane spanning protein compare
Atu1419 -1.4 -4.0 transcriptional regulator, GntR family compare
Atu1739 -1.4 -4.8 permease compare
Atu3485 -1.4 -7.8 short chain dehydrogenase compare
Atu4317 -1.4 -3.5 TetR family transcriptional regulator compare
Atu0062 -1.4 -5.9 transcriptional regulator, ROK family compare
Atu0026 -1.4 -1.1 hypothetical protein compare
Atu0036 -1.3 -2.6 hypothetical protein compare
Atu1810 -1.3 -1.3 hypothetical protein compare
Atu6150 -1.3 -8.1 P-450 monooxygenase compare
Atu2554 -1.3 -1.6 lysyl-tRNA synthetase compare
Atu2017 -1.3 -1.1 hypothetical protein compare
Atu0107 -1.3 -3.3 hypothetical protein compare
Atu0101 -1.3 -3.7 cytochrome c compare
Atu4451 -1.2 -6.8 mannitol 2-dehydrogenase compare
Atu0025 -1.2 -1.9 hypothetical protein compare
Atu2578 -1.2 -3.9 cAMP-dependent protein kinase regulatory subunit compare
Atu4613 -1.2 -8.0 glycosyltransferase compare
Atu1062 -1.2 -1.5 phosphatidylserine synthase compare
Atu0401 -1.2 -3.7 fructokinase compare
Atu3219 -1.2 -6.8 dihydroxy-acid dehydratase compare
Atu1780 -1.2 -6.2 ATP-dependent DNA helicase compare
Atu1904 -1.2 -2.3 transcriptional regulator compare
Atu1845 -1.2 -1.3 phosphoribosylformylglycinamidine synthase I compare
Atu1077 -1.2 -3.1 DNA repair protein compare
Atu3469 -1.1 -1.9 phosphoglyceromutase compare
Atu4610 -1.1 -6.3 sugar nucleotide epimerase/dehydratase compare
Atu0331 -1.1 -1.2 sigma-54 modulation protein compare
Atu4614 -1.1 -3.1 glycosyltransferase compare
Atu2379 -1.1 -6.3 phosphomannomutase compare
Atu1838 -1.1 -3.3 ABC transporter, substrate binding protein (amino acid) compare
Atu2200 -1.1 -2.0 cold shock protein compare
Atu0876 -1.1 -1.6 superoxide dismutase compare
Atu3971 -1.1 -7.2 dihydroxy-acid dehydratase compare
Atu0923 -1.1 -4.0 hypothetical protein compare
Atu8018 -1.1 -0.8 hypothetical protein compare
Atu2464 -1.1 -2.4 formyltetrahydrofolate deformylase compare
Atu2028 -1.1 -1.8 transcriptional regulator, ArsR family compare
Atu0099 -1.0 -5.2 prephenate dehydratase compare
Atu1645 -1.0 -3.9 ABC transporter, substrate binding protein compare
Atu2113 -1.0 -2.3 N-acetylmuramoyl-L-alanine amidase compare
Atu1902 -1.0 -3.3 transketolase compare
Atu1307 -1.0 -3.8 dihydroorotase compare
Atu2692 -1.0 -2.5 intracellular septation protein compare
Atu1219 -1.0 -1.0 hypothetical protein compare
Atu0189 -1.0 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu4685 -1.0 -3.4 LacI family transcriptional regulator compare
Atu2790 -1.0 -1.8 3-isopropylmalate dehydratase, small subunit compare
Atu2718 -1.0 -3.9 homoserine O-succinyltransferase compare
Atu0031 -1.0 -1.2 PTS system, IIA component compare
Atu0703 -1.0 -1.8 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu6144 -1.0 -7.4 agrocinopine phosphodiesterase compare
Atu0768 -1.0 -6.8 cytochrome-c oxidase chain I compare
Atu2286 -1.0 -1.3 hypothetical protein compare
Atu4609 -1.0 -5.8 glycosyltransferase compare
Atu4323 -1.0 -3.9 ribitol 2-dehydrogenase compare
Atu4615 -1.0 -5.6 glucose-1-phosphate thymidylyltransferase compare
Atu3467 -1.0 -1.2 hypothetical protein compare
Atu2730 -1.0 -6.5 beta (1-->2) glucan biosynthesis protein compare
Atu1464 -1.0 -3.6 glycine cleavage system T protein, aminomethyltransferase compare
Atu1354 -0.9 -1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1646 -0.9 -2.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1573 -0.9 -0.9 hypothetical protein compare
Atu4148 -0.9 -3.7 UDP-glucuronic acid epimerase compare
Atu5125 -0.9 -3.0 GntR family transcriptional regulator compare
Atu3885 -0.9 -3.5 inositol monophosphatase compare
Atu2791 -0.9 -3.7 3-isopropylmalate dehydrogenase compare
Atu5115 -0.9 -1.1 hypothetical protein compare
Atu1546 -0.9 -2.8 transcriptional regulator, MerR family compare
Atu2001 -0.9 -4.7 excinuclease ABC subunit B compare
Atu2346 -0.9 -4.9 ABC transporter, membrane spanning protein (sugar) compare
Atu4608 -0.9 -5.5 hypothetical protein compare
Atu1149 -0.9 -1.2 adenylate cyclase compare
Atu0502 -0.9 -3.5 acetyl-CoA acetyltransferase compare
Atu6145 -0.9 -5.8 arabinose phosphate phosphatase compare
Atu0886 -0.9 -1.1 hypothetical protein compare
Atu0162 -0.9 -2.7 biopolymer transport protein compare
Atu5464 -0.9 -4.5 IclR family transcriptional regulator compare
Atu0328 -0.9 -4.2 heat-inducible transcription repressor compare
Atu1260 -0.8 -1.1 hypothetical protein compare
Atu3912 -0.8 -4.0 hypothetical protein compare
Atu6189 -0.8 -1.0 protein secretion chaperone compare
Atu1542 -0.8 -3.2 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu8088 -0.8 -1.1 hypothetical protein compare
Atu2634 -0.8 -1.1 hypothetical protein compare
Atu4056 -0.8 -3.1 succinoglycan biosynthesis protein compare
Atu0361 -0.8 -1.8 transcriptional regulator compare
Atu3746 -0.8 -3.3 hypothetical protein compare
Atu0809 -0.8 -1.2 hypothetical protein compare
Atu1620 -0.8 -4.8 triosephosphate isomerase compare
Atu1380 -0.8 -3.8 zinc metallopeptidase compare
Atu0161 -0.8 -4.5 biopolymer transport protein compare
Atu0163 -0.8 -3.0 tonB protein compare
Atu2555 -0.8 -2.6 L-lysine 2,3-aminomutase compare
Atu0660 -0.8 -4.1 hydrolase compare
Atu3963 -0.8 -4.0 GntR family transcriptional regulator compare
Atu1251 -0.8 -4.5 O-acetylhomoserine sulfhydrylase compare
Atu2115 -0.8 -4.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2592 -0.8 -3.8 hypothetical protein compare
Atu5088 -0.8 -1.8 hypothetical protein compare
Atu3910 -0.8 -1.7 LamB/YcsF family protein compare
Atu4029 -0.8 -3.5 gluconolactonase compare
Atu3147 -0.8 -4.3 oxidoreductase compare
Atu4099 -0.8 -3.8 hypothetical protein compare
Atu0205 -0.8 -4.5 methylmalonate-semialdehyde dehydrogenase compare


Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days across organisms