Experiment set6IT043 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu1687 -5.9 -9.9 anthranilate phosphoribosyltransferase compare
Atu2036 -5.5 -9.8 acetolactate synthase III, large subunit compare
Atu1688 -5.4 -3.7 indole-3-glycerol-phosphate synthase compare
Atu1750 -5.3 -4.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu0679 -5.3 -6.3 ATP phosphoribosyltransferase compare
Atu0030 -5.2 -2.1 phosphocarrier protein HPr compare
Atu0678 -5.1 -4.9 histidyl-tRNA synthetase compare
Atu0537 -4.9 -5.9 histidinol dehydrogenase compare
Atu0043 -4.9 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu1874 -4.9 -3.3 RecA protein compare
Atu1588 -4.8 -8.7 homoserine dehydrogenase compare
Atu0038 -4.6 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2289 -4.5 -17.9 anthranilate synthase component I and II compare
Atu2040 -4.5 -6.8 phosphoserine phosphatase compare
Atu3885 -4.3 -10.1 inositol monophosphatase compare
Atu3910 -4.3 -6.9 LamB/YcsF family protein compare
Atu3908 -4.3 -9.7 GntR family transcriptional regulator compare
Atu0017 -4.1 -3.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3706 -4.0 -9.3 D-3-phosphoglycerate dehydrogenase compare
Atu4773 -3.8 -2.0 two component response regulator compare
Atu0039 -3.8 -2.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu0041 -3.8 -2.6 glutamine amidotransferase compare
Atu3912 -3.7 -9.6 hypothetical protein compare
Atu1129 -3.7 -10.2 excinuclease ABC chain C compare
Atu3913 -3.6 -8.3 biotin carboxylase compare
Atu1359 -3.5 -1.4 dnaK deletion suppressor protein compare
Atu0269 -3.5 -6.2 exodeoxyribonuclease VII large subunit compare
Atu2083 -3.4 -4.4 DNA repair protein RecN compare
Atu3707 -3.4 -3.8 phosphoserine aminotransferase compare
Atu1205 -3.4 -14.7 threonine dehydratase compare
Atu2684 -3.4 -2.5 hypothetical protein compare
Atu0093 -3.3 -6.7 Recombination protein compare
Atu2728 -3.3 -3.2 beta (1-->2) glucan export ATP-binding protein compare
Atu1077 -3.2 -3.8 DNA repair protein compare
Atu0876 -3.2 -2.7 superoxide dismutase compare
Atu0971 -3.1 -4.1 two component sensor kinase compare
Atu2057 -3.0 -3.5 DNA helicase II compare
Atu1513 -2.9 -6.9 ABC excinuclease subunit A compare
Atu0977 -2.9 -6.0 serine protease DO-like protease compare
Atu1039 -2.7 -5.3 DNA repair protein RecO compare
Atu2648 -2.7 -5.1 hypothetical protein compare
Atu0141 -2.6 -2.4 cytochrome O ubiquinol oxidase subunit I compare
Atu2464 -2.5 -3.4 formyltetrahydrofolate deformylase compare
Atu3469 -2.4 -4.5 phosphoglyceromutase compare
Atu8167 -2.4 -10.3 putative transmembrane protein compare
Atu2052 -2.4 -7.9 hypothetical protein compare
Atu0040 -2.3 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0769 -2.3 -2.5 protoheme IX farnesyltransferase compare
Atu3730 -2.2 -1.9 hypothetical protein compare
Atu0073 -2.2 -5.5 recF-like protein compare
Atu3598 -2.1 -2.3 thiol:disulfide interchange protein compare
Atu1417 -2.1 -7.6 enoyl-CoA hydratase compare
Atu1447 -2.1 -2.1 two component sensor kinase compare
Atu0099 -2.0 -10.5 prephenate dehydratase compare
Atu3754 -2.0 -4.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3755 -2.0 -3.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3763 -2.0 -2.5 hypothetical protein compare
Atu4346 -1.9 -6.7 hypothetical protein compare
Atu1364 -1.8 -5.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2125 -1.8 -2.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu4317 -1.8 -3.0 TetR family transcriptional regulator compare
Atu1705 -1.8 -5.4 SEC-independent protein translocase protein compare
Atu1644 -1.7 -3.6 hypothetical protein compare
Atu0784 -1.7 -4.4 hypothetical protein compare
Atu3311 -1.7 -10.6 phosphomannose isomerase compare
Atu1850 -1.7 -2.5 phosphoribosylformylglycinamidine synthetase II compare
Atu2379 -1.7 -8.1 phosphomannomutase compare
Atu2650 -1.7 -8.7 glycerol-3-phosphate dehydrogenase compare
Atu0142 -1.6 -2.2 cytochrome o ubiquinol oxidase subunit II compare
Atu2264 -1.6 -8.7 2-isopropylmalate synthase compare
Atu0101 -1.6 -5.6 cytochrome c compare
Atu1810 -1.6 -1.5 hypothetical protein compare
Atu1163 -1.6 -2.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2791 -1.6 -6.3 3-isopropylmalate dehydrogenase compare
Atu0331 -1.6 -2.3 sigma-54 modulation protein compare
Atu2001 -1.6 -5.1 excinuclease ABC subunit B compare
Atu1140 -1.6 -5.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2439 -1.6 -0.9 hypothetical protein compare
Atu2200 -1.5 -3.2 cold shock protein compare
Atu0421 -1.5 -1.7 ABC transporter, membrane spanning protein compare
Atu4055 -1.5 -5.3 endo-1,3-1,4-beta-glycanase compare
Atu0434 -1.5 -2.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0893 -1.5 -4.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0422 -1.5 -2.7 ABC transporter, membrane spanning protein compare
Atu3353 -1.5 -8.0 mannose-1-phosphate guanylyltransferase compare
Atu0029 -1.5 -5.8 S-adenosylhomocysteine hydrolase compare
Atu2799 -1.5 -4.7 precorrin-6x reductase compare
Atu4610 -1.5 -9.6 sugar nucleotide epimerase/dehydratase compare
Atu0647 -1.5 -6.1 phosphoribosylamine--glycine ligase compare
Atu0086 -1.5 -1.4 ribosome-binding factor A compare
Atu3739 -1.4 -3.2 phosphoglycerate kinase compare
Atu2606 -1.4 -4.3 transcriptional regulator, GntR family compare
Atu3971 -1.4 -9.8 dihydroxy-acid dehydratase compare
Atu0985 -1.4 -5.5 permease compare
Atu4702 -1.4 -6.8 GntR family transcriptional regulator compare
Atu0354 -1.4 -2.0 ferric uptake regulator compare
Atu1141 -1.3 -4.0 Phosphoribosylglycinamide synthetase compare
Atu1573 -1.3 -1.3 hypothetical protein compare
Atu4072 -1.3 -1.5 nodulation protein N compare
Atu1647 -1.3 -6.5 ABC transporter, membrane spanning protein compare
Atu2113 -1.3 -3.5 N-acetylmuramoyl-L-alanine amidase compare
Atu2709 -1.3 -8.4 3-isopropylmalate dehydratase, large subunit compare
Atu0400 -1.3 -3.6 orotate phosphoribosyltransferase compare
Atu0978 -1.3 -5.2 two component response regulator compare
Atu1075 -1.3 -5.5 amidophosphoribosyltransferase compare
Atu6131 -1.3 -5.4 TraR Antiactivator compare
Atu1845 -1.3 -2.9 phosphoribosylformylglycinamidine synthase I compare
Atu0923 -1.3 -5.6 hypothetical protein compare
Atu1518 -1.3 -3.8 transcriptional regulator, Fur family compare
Atu1354 -1.2 -1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0291 -1.2 -5.4 hypothetical protein compare
Atu2555 -1.2 -3.5 L-lysine 2,3-aminomutase compare
Atu8138 -1.2 -1.8 hypothetical protein compare
Atu0361 -1.2 -1.9 transcriptional regulator compare
Atu1830 -1.2 -3.2 bacterioferritin comigratory protein compare
Atu1030 -1.2 -0.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3911 -1.2 -1.8 hypothetical protein compare
Atu1844 -1.2 -3.1 Phosphoribosylformylglycinamidine synthetase compare
Atu2730 -1.2 -7.9 beta (1-->2) glucan biosynthesis protein compare
Atu0895 -1.2 -2.6 ABC transporter, substrate binding protein compare
Atu0205 -1.2 -7.1 methylmalonate-semialdehyde dehydrogenase compare
Atu1260 -1.2 -1.4 hypothetical protein compare
Atu2649 -1.2 -3.1 hypothetical protein compare
Atu1780 -1.2 -7.0 ATP-dependent DNA helicase compare
Atu3963 -1.2 -4.0 GntR family transcriptional regulator compare
Atu0062 -1.2 -5.5 transcriptional regulator, ROK family compare
Atu2801 -1.2 -2.8 precorrin-2 C20 methyltransferase compare
Atu0533 -1.2 -2.6 putative inhibitor of septum formation compare
Atu1308 -1.2 -4.7 aspartate carbamoyl transferase catalytic subunit compare
Atu0162 -1.1 -3.6 biopolymer transport protein compare
Atu1904 -1.1 -3.5 transcriptional regulator compare
Atu1327 -1.1 -2.8 NADH-ubiquinone oxidoreductase compare
Atu1686 -1.1 -7.7 peptidyl-prolyl cis-trans isomerse D compare
Atu2239 -1.1 -2.6 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0188 -1.1 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu4149 -1.1 -6.1 UDP-glucose 6-dehydrogenase compare
Atu0677 -1.1 -2.1 hypothetical protein compare
Atu4166 -1.1 -1.8 UDP-glucose 4-epimerase compare
Atu2192 -1.1 -1.4 hypothetical protein compare
Atu0401 -1.1 -3.0 fructokinase compare
Atu1645 -1.1 -4.6 ABC transporter, substrate binding protein compare
Atu1902 -1.1 -5.1 transketolase compare
Atu1707 -1.1 -4.7 hypothetical protein compare
Atu2237 -1.1 -3.5 cytochrome c1 compare
Atu2267 -1.1 -4.1 hypothetical protein compare
Atu2124 -1.1 -4.3 transcriptional regulator, ArsR family compare
Atu4532 -1.1 -4.1 shikimate 5-dehydrogenase compare
Atu3219 -1.1 -5.8 dihydroxy-acid dehydratase compare
Atu5125 -1.1 -3.8 GntR family transcriptional regulator compare
Atu2591 -1.1 -4.6 glucosyltransferase compare
Atu1646 -1.1 -3.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu4029 -1.1 -4.5 gluconolactonase compare
Atu1714 -1.1 -1.4 exonuclease III compare
Atu0432 -1.0 -4.6 O-succinylhomoserine sulfhydrylase compare
Atu0050 -1.0 -3.2 two component response regulator compare
Atu2710 -1.0 -5.3 hypothetical protein compare
Atu1589 -1.0 -3.9 aminotransferase, class I compare
Atu6036 -1.0 -1.3 entry-exclusion protein compare
Atu0190 -1.0 -4.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2590 -1.0 -5.5 hypothetical protein compare
Atu2238 -1.0 -4.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1456 -1.0 -5.3 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3337 -1.0 -4.3 LacI family transcriptional regulator compare
Atu2824 -1.0 -3.4 hypothetical protein compare
Atu0036 -1.0 -2.6 hypothetical protein compare
Atu0976 -1.0 -2.0 cycL protein compare
Atu2207 -1.0 -3.2 two component sensor kinase compare
Atu0768 -1.0 -6.0 cytochrome-c oxidase chain I compare
Atu1182 -1.0 -1.7 hypothetical protein compare
Atu3732 -1.0 -5.9 hemolysin compare
Atu2583 -1.0 -5.8 glycosyltransferase compare
Atu0499 -1.0 -4.8 hypothetical protein compare
Atu2304 -1.0 -5.1 bacteroid development protein compare
Atu0801 -1.0 -6.7 chromosome segregation protein compare
Atu1579 -0.9 -5.3 ABC transporter, membrane spanning protein (amino acid) compare
Atu2045 -0.9 -3.6 HFLK protein compare
Atu2722 -0.9 -3.6 porin compare
Atu1683 -0.9 -2.0 hypothetical protein compare
Atu4323 -0.9 -4.1 ribitol 2-dehydrogenase compare
Atu4148 -0.9 -4.4 UDP-glucuronic acid epimerase compare
Atu0357 -0.9 -3.6 phosphate starvation inducible protein compare
Atu5464 -0.9 -4.8 IclR family transcriptional regulator compare
Atu1708 -0.9 -4.6 hypothetical protein compare
Atu4614 -0.9 -4.5 glycosyltransferase compare
Atu3280 -0.9 -3.6 GntR family transcriptional regulator compare
Atu0981 -0.9 -5.1 glutamate-ammonia-ligase adenylyltransferase compare
Atu3468 -0.9 -0.7 hypothetical protein compare
Atu6021 -0.9 -6.5 D-nopaline dehydrogenase compare
Atu0636 -0.9 -4.9 hypothetical protein compare
Atu4711 -0.9 -2.8 two component sensor kinase compare
Atu0767 -0.9 -3.0 cytochrome c oxidase subunit II compare
Atu1307 -0.9 -2.4 dihydroorotase compare
Atu1838 -0.9 -2.5 ABC transporter, substrate binding protein (amino acid) compare
Atu5430 -0.9 -1.3 hypothetical protein compare
Atu2807 -0.9 -3.4 cob(I)alamin adenosyltransferase compare
Atu1606 -0.9 -3.1 methionine aminopeptidase compare
Atu2183 -0.9 -4.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2592 -0.9 -3.5 hypothetical protein compare
Atu1836 -0.9 -1.8 hypothetical protein compare
Atu1454 -0.9 -4.1 siroheme synthase compare


Specific Phenotypes

For 7 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms