Experiment set6IT042 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu3908 -5.7 -11.0 GntR family transcriptional regulator compare
Atu0030 -5.1 -2.1 phosphocarrier protein HPr compare
Atu1874 -4.9 -3.3 RecA protein compare
Atu2036 -4.8 -13.8 acetolactate synthase III, large subunit compare
Atu0038 -4.7 -5.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3912 -4.2 -8.0 hypothetical protein compare
Atu1687 -4.1 -12.4 anthranilate phosphoribosyltransferase compare
Atu0043 -4.0 -3.9 imidazoleglycerol-phosphate dehydratase compare
Atu3763 -4.0 -2.7 hypothetical protein compare
Atu1688 -3.9 -8.3 indole-3-glycerol-phosphate synthase compare
Atu0678 -3.8 -7.7 histidyl-tRNA synthetase compare
Atu1750 -3.8 -4.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu2289 -3.8 -18.8 anthranilate synthase component I and II compare
Atu0679 -3.8 -7.6 ATP phosphoribosyltransferase compare
Atu1588 -3.7 -9.6 homoserine dehydrogenase compare
Atu0041 -3.7 -2.5 glutamine amidotransferase compare
Atu2728 -3.5 -2.4 beta (1-->2) glucan export ATP-binding protein compare
Atu2057 -3.5 -4.1 DNA helicase II compare
Atu3913 -3.5 -9.6 biotin carboxylase compare
Atu3707 -3.4 -4.5 phosphoserine aminotransferase compare
Atu0537 -3.2 -8.2 histidinol dehydrogenase compare
Atu0769 -3.2 -3.0 protoheme IX farnesyltransferase compare
Atu2040 -3.2 -7.2 phosphoserine phosphatase compare
Atu4773 -3.1 -2.6 two component response regulator compare
Atu0039 -3.1 -3.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu1205 -3.1 -14.7 threonine dehydratase compare
Atu1030 -3.0 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0971 -2.9 -4.4 two component sensor kinase compare
Atu3910 -2.9 -6.6 LamB/YcsF family protein compare
Atu1129 -2.9 -10.4 excinuclease ABC chain C compare
Atu2648 -2.8 -4.5 hypothetical protein compare
Atu1417 -2.8 -8.4 enoyl-CoA hydratase compare
Atu3706 -2.7 -9.6 D-3-phosphoglycerate dehydrogenase compare
Atu4317 -2.7 -3.1 TetR family transcriptional regulator compare
Atu2083 -2.7 -5.8 DNA repair protein RecN compare
Atu2239 -2.6 -5.2 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3598 -2.6 -2.8 thiol:disulfide interchange protein compare
Atu8167 -2.6 -12.4 putative transmembrane protein compare
Atu1447 -2.5 -2.5 two component sensor kinase compare
Atu3885 -2.5 -9.6 inositol monophosphatase compare
Atu1039 -2.4 -3.8 DNA repair protein RecO compare
Atu1077 -2.4 -3.8 DNA repair protein compare
Atu4055 -2.4 -8.0 endo-1,3-1,4-beta-glycanase compare
Atu0086 -2.4 -1.9 ribosome-binding factor A compare
Atu1163 -2.3 -2.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1705 -2.3 -4.2 SEC-independent protein translocase protein compare
Atu0040 -2.3 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1446 -2.3 -3.0 two component response regulator compare
Atu0269 -2.2 -5.7 exodeoxyribonuclease VII large subunit compare
Atu2684 -2.2 -2.4 hypothetical protein compare
Atu0093 -2.2 -5.8 Recombination protein compare
Atu0073 -2.2 -6.4 recF-like protein compare
Atu0017 -2.1 -3.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1359 -2.1 -1.2 dnaK deletion suppressor protein compare
Atu4711 -2.0 -6.5 two component sensor kinase compare
Atu0976 -1.9 -2.7 cycL protein compare
Atu2237 -1.9 -5.7 cytochrome c1 compare
Atu3755 -1.9 -5.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3469 -1.9 -4.2 phosphoglyceromutase compare
Atu0647 -1.9 -6.3 phosphoribosylamine--glycine ligase compare
Atu2125 -1.9 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu1513 -1.8 -5.1 ABC excinuclease subunit A compare
Atu0141 -1.8 -2.3 cytochrome O ubiquinol oxidase subunit I compare
Atu1535 -1.8 -3.8 cytochrome c oxidase, FixQ chain compare
Atu3754 -1.7 -3.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2207 -1.7 -3.8 two component sensor kinase compare
Atu2264 -1.7 -7.4 2-isopropylmalate synthase compare
Atu2791 -1.6 -7.5 3-isopropylmalate dehydrogenase compare
Atu0361 -1.6 -3.2 transcriptional regulator compare
Atu8138 -1.6 -2.1 hypothetical protein compare
Atu1364 -1.6 -6.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2235 -1.6 -3.1 hypothetical protein compare
Atu2238 -1.6 -6.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2662 -1.6 -1.8 acetyltransferase compare
Atu4166 -1.6 -1.5 UDP-glucose 4-epimerase compare
Atu1074 -1.6 -6.8 NAD/NADP dependent oxidoreductase compare
Atu3739 -1.6 -3.5 phosphoglycerate kinase compare
Atu3311 -1.6 -10.2 phosphomannose isomerase compare
Atu0977 -1.5 -4.5 serine protease DO-like protease compare
Atu0031 -1.5 -1.6 PTS system, IIA component compare
Atu0331 -1.5 -2.3 sigma-54 modulation protein compare
Atu0399 -1.5 -5.4 dihydroorotase compare
Atu3750 -1.5 -2.4 thiamine-phosphate pyrophosphorylase compare
Atu0422 -1.5 -2.1 ABC transporter, membrane spanning protein compare
Atu6131 -1.5 -5.4 TraR Antiactivator compare
Atu3730 -1.5 -1.4 hypothetical protein compare
Atu2192 -1.4 -1.7 hypothetical protein compare
Atu2650 -1.4 -7.8 glycerol-3-phosphate dehydrogenase compare
Atu1850 -1.4 -2.2 phosphoribosylformylglycinamidine synthetase II compare
Atu2709 -1.4 -10.1 3-isopropylmalate dehydratase, large subunit compare
Atu3353 -1.4 -7.7 mannose-1-phosphate guanylyltransferase compare
Atu1530 -1.4 -7.6 nitrogen fixation protein FixG compare
Atu3663 -1.4 -1.8 hypothetical protein compare
Atu2183 -1.4 -6.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1470 -1.3 -1.3 Camphor resistance protein compare
Atu0291 -1.3 -6.8 hypothetical protein compare
Atu2620 -1.3 -1.5 hypothetical protein compare
Atu6020 -1.3 -4.3 conserved hypothetical protein compare
Atu2052 -1.3 -5.5 hypothetical protein compare
Atu2730 -1.3 -9.0 beta (1-->2) glucan biosynthesis protein compare
Atu1646 -1.3 -4.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu5125 -1.3 -4.1 GntR family transcriptional regulator compare
Atu1679 -1.3 -2.6 peptidyl prolyl cis-trans isomerase compare
Atu0142 -1.3 -2.4 cytochrome o ubiquinol oxidase subunit II compare
Atu4702 -1.3 -6.0 GntR family transcriptional regulator compare
Atu1528 -1.3 -8.0 nitrogen fixation protein FixI compare
Atu1602 -1.3 -5.1 transcriptional activator, Crp family compare
Atu0099 -1.3 -5.4 prephenate dehydratase compare
Atu1537 -1.3 -6.8 cytochrome-c oxidase, FixN chain compare
Atu1534 -1.3 -6.4 cytochrome-c oxidase, FixP chain compare
Atu2379 -1.3 -6.7 phosphomannomutase compare
Atu2790 -1.3 -2.2 3-isopropylmalate dehydratase, small subunit compare
Atu0985 -1.3 -4.5 permease compare
Atu5115 -1.2 -2.0 hypothetical protein compare
Atu0036 -1.2 -2.3 hypothetical protein compare
Atu1810 -1.2 -1.3 hypothetical protein compare
Atu1141 -1.2 -5.6 Phosphoribosylglycinamide synthetase compare
Atu4514 -1.2 -3.3 RpiR family transcriptional regulator compare
Atu1173 -1.2 -7.3 MFS permease compare
Atu6114 -1.2 -1.4 hypothetical protein compare
Atu0421 -1.2 -1.5 ABC transporter, membrane spanning protein compare
Atu0973 -1.2 -5.3 cycH protein compare
Atu0533 -1.2 -1.8 putative inhibitor of septum formation compare
Atu1780 -1.2 -5.9 ATP-dependent DNA helicase compare
Atu6021 -1.2 -7.8 D-nopaline dehydrogenase compare
Atu4346 -1.2 -4.3 hypothetical protein compare
Atu4532 -1.2 -5.3 shikimate 5-dehydrogenase compare
Atu2824 -1.1 -3.9 hypothetical protein compare
Atu2800 -1.1 -2.2 precorrin-3B C17-methyltransferase compare
Atu1830 -1.1 -3.0 bacterioferritin comigratory protein compare
Atu1307 -1.1 -4.3 dihydroorotase compare
Atu1739 -1.1 -3.8 permease compare
Atu4610 -1.1 -6.0 sugar nucleotide epimerase/dehydratase compare
Atu1845 -1.1 -3.9 phosphoribosylformylglycinamidine synthase I compare
Atu1546 -1.1 -3.7 transcriptional regulator, MerR family compare
Atu3911 -1.1 -2.4 hypothetical protein compare
Atu0050 -1.1 -3.5 two component response regulator compare
Atu3183 -1.1 -0.8 hypothetical protein compare
Atu2640 -1.1 -3.0 hypothetical protein compare
Atu0029 -1.1 -4.4 S-adenosylhomocysteine hydrolase compare
Atu0690 -1.1 -1.5 hypothetical protein compare
Atu0101 -1.1 -3.4 cytochrome c compare
Atu0401 -1.1 -4.7 fructokinase compare
Atu1536 -1.1 -2.5 cytochrome C oxidase, FixO chain compare
Atu4618 -1.1 -6.0 dTDP-rhamnose-3,5-epimerase compare
Atu2439 -1.1 -0.6 hypothetical protein compare
Atu1422 -1.0 -5.3 transcriptional regulator, MarR family compare
Atu2376 -1.0 -1.9 hypothetical protein compare
Atu1645 -1.0 -5.0 ABC transporter, substrate binding protein compare
Atu0319 -1.0 -1.1 ubiquinone biosynthesis protein compare
Atu1685 -1.0 -0.9 hypothetical protein compare
Atu0923 -1.0 -4.3 hypothetical protein compare
Atu0801 -1.0 -6.4 chromosome segregation protein compare
Atu0161 -1.0 -6.6 biopolymer transport protein compare
Atu0499 -1.0 -5.8 hypothetical protein compare
Atu0357 -1.0 -4.9 phosphate starvation inducible protein compare
Atu1140 -1.0 -3.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu6019 -1.0 -7.7 D-nopaline dehydrogenase compare
Atu1103 -1.0 -2.2 rRNA-adenine N6,N6-dimethyltransferase compare
Atu4217 -1.0 -1.5 TetR family transcriptional regulator compare
Atu2001 -1.0 -3.6 excinuclease ABC subunit B compare
Atu0432 -1.0 -4.3 O-succinylhomoserine sulfhydrylase compare
Atu2827 -0.9 -2.7 hypothetical protein compare
Atu0025 -0.9 -2.3 hypothetical protein compare
Atu4149 -0.9 -5.4 UDP-glucose 6-dehydrogenase compare
Atu2578 -0.9 -3.4 cAMP-dependent protein kinase regulatory subunit compare
Atu1380 -0.9 -4.7 zinc metallopeptidase compare
Atu1354 -0.9 -1.2 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3468 -0.9 -0.8 hypothetical protein compare
Atu0978 -0.9 -4.3 two component response regulator compare
Atu2592 -0.9 -4.0 hypothetical protein compare
Atu2649 -0.9 -2.3 hypothetical protein compare
Atu1099 -0.9 -4.4 hypothetical protein compare
Atu2718 -0.9 -3.2 homoserine O-succinyltransferase compare
Atu0153 -0.9 -3.8 transcriptional regulator, Fur family compare
Atu3443 -0.9 -2.0 hypothetical protein compare
Atu1708 -0.9 -3.8 hypothetical protein compare
Atu4072 -0.9 -1.4 nodulation protein N compare
Atu3775 -0.9 -0.9 hypothetical protein compare
Atu0434 -0.9 -1.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1714 -0.9 -1.3 exonuclease III compare
Atu1707 -0.9 -4.5 hypothetical protein compare
Atu4609 -0.8 -5.8 glycosyltransferase compare
Atu3688 -0.8 -2.6 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu2073 -0.8 -3.8 membrane protein compare
Atu2584 -0.8 -3.1 hypothetical protein compare
Atu1527 -0.8 -2.9 nitrogen fixation protein FixS compare
Atu1589 -0.8 -2.9 aminotransferase, class I compare
Atu2464 -0.8 -1.9 formyltetrahydrofolate deformylase compare
Atu5160 -0.8 -2.0 transcriptional regulator protein compare
Atu0966 -0.8 -1.5 hypothetical protein compare
Atu1075 -0.8 -4.0 amidophosphoribosyltransferase compare
Atu4040 -0.8 -2.6 hypothetical protein compare
Atu2583 -0.8 -5.7 glycosyltransferase compare
Atu3971 -0.8 -6.3 dihydroxy-acid dehydratase compare
Atu1308 -0.8 -3.1 aspartate carbamoyl transferase catalytic subunit compare
Atu0298 -0.8 -4.0 orotidine 5 compare
Atu3219 -0.8 -5.6 dihydroxy-acid dehydratase compare
Atu1686 -0.8 -6.1 peptidyl-prolyl cis-trans isomerse D compare
Atu1454 -0.8 -4.2 siroheme synthase compare


Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms