Experiment set6IT042 for Agrobacterium fabrum C58
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Group: in plantaMedia: + Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Culturing: Agro_ML11, at 30 (C)
By: Mitchell Thompson on 12/1/21
Specific Phenotypes
For 4 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Chorismate Synthesis | 1 |
| Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate) | 1 |
| DNA repair, bacterial RecFOR pathway | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fatty acid biosynthesis
- Urea cycle and metabolism of amino groups
- Arginine and proline metabolism
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| urea degradation I | 3 | 3 | 1 |
| biotin-carboxyl carrier protein assembly | 4 | 4 | 1 |
| chorismate biosynthesis from 3-dehydroquinate | 5 | 5 | 1 |
| superpathway of allantoin degradation in yeast | 6 | 3 | 1 |
| chorismate biosynthesis I | 7 | 7 | 1 |
| superpathway of L-phenylalanine biosynthesis | 10 | 10 | 1 |
| superpathway of L-tyrosine biosynthesis | 10 | 10 | 1 |
| chorismate biosynthesis II (archaea) | 12 | 8 | 1 |
| superpathway of L-tryptophan biosynthesis | 13 | 13 | 1 |
| 3-hydroxypropanoate cycle | 13 | 8 | 1 |
| glyoxylate assimilation | 13 | 5 | 1 |
| superpathway of aromatic amino acid biosynthesis | 18 | 18 | 1 |
| 3-hydroxypropanoate/4-hydroxybutanate cycle | 18 | 11 | 1 |
| superpathway of the 3-hydroxypropanoate cycle | 18 | 8 | 1 |
| superpathway of chorismate metabolism | 59 | 38 | 1 |