Experiment set6IT041 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu2684 -4.9 -2.4 hypothetical protein compare
Atu2036 -4.4 -15.1 acetolactate synthase III, large subunit compare
Atu0777 -4.0 -1.1 hypothetical protein compare
Atu3908 -3.8 -13.6 GntR family transcriptional regulator compare
Atu0678 -3.7 -8.3 histidyl-tRNA synthetase compare
Atu1588 -3.7 -10.1 homoserine dehydrogenase compare
Atu0030 -3.6 -1.5 phosphocarrier protein HPr compare
Atu1359 -3.5 -1.0 dnaK deletion suppressor protein compare
Atu0043 -3.5 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu0537 -3.5 -8.6 histidinol dehydrogenase compare
Atu0641 -3.3 -3.3 hypothetical protein compare
Atu3299 -3.3 -2.7 hypothetical protein compare
Atu1354 -3.2 -1.3 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0679 -3.2 -6.1 ATP phosphoribosyltransferase compare
Atu6098 -3.2 -0.9 transcriptional regulator, HTH family compare
Atu4773 -3.1 -1.8 two component response regulator compare
Atu0971 -3.0 -4.1 two component sensor kinase compare
Atu1030 -3.0 -1.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1417 -2.9 -8.3 enoyl-CoA hydratase compare
Atu0188 -2.9 -3.7 ABC transporter, membrane spanning protein (peptide) compare
Atu1687 -2.9 -11.0 anthranilate phosphoribosyltransferase compare
Atu1750 -2.9 -3.8 phosphoribosyl c-AMP cyclohydrolase compare
Atu1205 -2.7 -12.1 threonine dehydratase compare
Atu0039 -2.7 -1.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu0041 -2.7 -1.9 glutamine amidotransferase compare
Atu1688 -2.6 -5.9 indole-3-glycerol-phosphate synthase compare
Atu0038 -2.6 -3.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2235 -2.5 -2.4 hypothetical protein compare
Atu1874 -2.5 -4.1 RecA protein compare
Atu2083 -2.5 -4.8 DNA repair protein RecN compare
Atu2728 -2.5 -3.0 beta (1-->2) glucan export ATP-binding protein compare
Atu0101 -2.5 -3.4 cytochrome c compare
Atu1513 -2.5 -6.4 ABC excinuclease subunit A compare
Atu8025 -2.5 -1.4 hypothetical protein compare
Atu3707 -2.4 -2.5 phosphoserine aminotransferase compare
Atu3763 -2.4 -2.0 hypothetical protein compare
Atu0399 -2.4 -6.6 dihydroorotase compare
Atu2800 -2.4 -3.7 precorrin-3B C17-methyltransferase compare
Atu2289 -2.4 -12.8 anthranilate synthase component I and II compare
Atu1447 -2.3 -2.2 two component sensor kinase compare
Atu0331 -2.3 -2.5 sigma-54 modulation protein compare
Atu4072 -2.3 -1.8 nodulation protein N compare
Atu4166 -2.3 -1.9 UDP-glucose 4-epimerase compare
Atu3706 -2.3 -8.2 D-3-phosphoglycerate dehydrogenase compare
Atu8096 -2.3 -1.4 hypothetical protein compare
Atu0040 -2.3 -0.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0690 -2.3 -2.7 hypothetical protein compare
Atu1364 -2.3 -5.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3311 -2.2 -13.1 phosphomannose isomerase compare
Atu0422 -2.2 -2.3 ABC transporter, membrane spanning protein compare
Atu3730 -2.2 -1.4 hypothetical protein compare
Atu2379 -2.2 -8.0 phosphomannomutase compare
Atu3912 -2.1 -6.0 hypothetical protein compare
Atu3604 -2.1 -1.1 hypoxanthine phosphoribosyltransferase compare
Atu1129 -2.1 -8.3 excinuclease ABC chain C compare
Atu2040 -2.0 -5.8 phosphoserine phosphatase compare
Atu8167 -1.9 -9.1 putative transmembrane protein compare
Atu0093 -1.9 -4.3 Recombination protein compare
Atu3885 -1.9 -5.7 inositol monophosphatase compare
Atu1470 -1.9 -1.0 Camphor resistance protein compare
Atu2376 -1.9 -2.2 hypothetical protein compare
Atu3353 -1.9 -10.2 mannose-1-phosphate guanylyltransferase compare
Atu3754 -1.8 -5.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2648 -1.8 -2.2 hypothetical protein compare
Atu3739 -1.8 -2.4 phosphoglycerate kinase compare
Atu0580 -1.8 -1.8 flagellar biosynthetic protein compare
Atu0086 -1.8 -1.2 ribosome-binding factor A compare
Atu2052 -1.8 -6.3 hypothetical protein compare
Atu3755 -1.8 -3.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3913 -1.7 -5.5 biotin carboxylase compare
Atu3469 -1.7 -3.1 phosphoglyceromutase compare
Atu1308 -1.7 -4.0 aspartate carbamoyl transferase catalytic subunit compare
Atu1077 -1.7 -4.2 DNA repair protein compare
Atu1327 -1.7 -2.6 NADH-ubiquinone oxidoreductase compare
Atu0977 -1.7 -4.2 serine protease DO-like protease compare
Atu3910 -1.7 -3.9 LamB/YcsF family protein compare
Atu1103 -1.7 -2.7 rRNA-adenine N6,N6-dimethyltransferase compare
Atu8138 -1.7 -1.2 hypothetical protein compare
Atu0401 -1.7 -3.6 fructokinase compare
Atu4610 -1.7 -7.6 sugar nucleotide epimerase/dehydratase compare
Atu4407 -1.6 -3.0 periplasmic nitrate reductase, NapD protein compare
Atu0769 -1.6 -1.7 protoheme IX farnesyltransferase compare
Atu2183 -1.6 -5.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1163 -1.6 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0269 -1.6 -3.3 exodeoxyribonuclease VII large subunit compare
Atu3757 -1.6 -1.9 hypothetical protein compare
Atu0017 -1.6 -2.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2439 -1.6 -1.2 hypothetical protein compare
Atu3009 -1.6 -0.9 exopolysaccharide production protein compare
Atu1141 -1.6 -4.1 Phosphoribosylglycinamide synthetase compare
Atu1810 -1.5 -1.0 hypothetical protein compare
Atu1535 -1.5 -2.5 cytochrome c oxidase, FixQ chain compare
Atu0029 -1.5 -3.7 S-adenosylhomocysteine hydrolase compare
Atu4618 -1.5 -6.8 dTDP-rhamnose-3,5-epimerase compare
Atu1566 -1.5 -1.2 hypothetical protein compare
Atu2193 -1.5 -1.0 hypothetical protein compare
Atu4616 -1.5 -1.3 dTDP-4-dehydrorhamnose reductase compare
Atu0533 -1.5 -1.5 putative inhibitor of septum formation compare
Atu0400 -1.5 -3.2 orotate phosphoribosyltransferase compare
Atu3014 -1.5 -1.1 hypothetical protein compare
Atu1140 -1.4 -2.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3467 -1.4 -2.2 hypothetical protein compare
Atu3712 -1.4 -1.0 hypothetical protein compare
Atu4711 -1.4 -5.1 two component sensor kinase compare
Atu1645 -1.4 -5.9 ABC transporter, substrate binding protein compare
Atu4055 -1.4 -5.1 endo-1,3-1,4-beta-glycanase compare
Atu2264 -1.4 -7.2 2-isopropylmalate synthase compare
Atu1307 -1.4 -4.6 dihydroorotase compare
Atu1683 -1.4 -2.1 hypothetical protein compare
Atu1039 -1.4 -2.6 DNA repair protein RecO compare
Atu1646 -1.4 -3.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu4346 -1.4 -4.7 hypothetical protein compare
Atu1647 -1.3 -6.3 ABC transporter, membrane spanning protein compare
Atu0978 -1.3 -5.2 two component response regulator compare
Atu4615 -1.3 -5.9 glucose-1-phosphate thymidylyltransferase compare
Atu2522 -1.3 -6.8 agrobacterium chromosomal virulence protein B compare
Atu0486 -1.3 -3.0 dihydroorotate dehydrogenase compare
Atu1850 -1.3 -1.8 phosphoribosylformylglycinamidine synthetase II compare
Atu5160 -1.3 -2.0 transcriptional regulator protein compare
Atu6189 -1.3 -1.2 protein secretion chaperone compare
Atu0508 -1.3 -2.4 PH Adaption potassium efflux system compare
Atu8087 -1.3 -0.8 putative peptidoglycan binding protein compare
Atu1558 -1.2 -2.4 permease compare
Atu0205 -1.2 -6.0 methylmalonate-semialdehyde dehydrogenase compare
Atu0237 -1.2 -2.0 hypothetical protein compare
Atu0141 -1.2 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu0923 -1.2 -5.3 hypothetical protein compare
Atu3663 -1.2 -1.0 hypothetical protein compare
Atu2146 -1.2 -3.0 hypothetical protein compare
Atu0966 -1.2 -2.1 hypothetical protein compare
Atu1422 -1.2 -5.6 transcriptional regulator, MarR family compare
Atu2207 -1.2 -2.5 two component sensor kinase compare
Atu2797 -1.2 -3.4 cobalamin biosynthesis protein compare
Atu0099 -1.2 -4.0 prephenate dehydratase compare
Atu2017 -1.2 -0.8 hypothetical protein compare
Atu1705 -1.2 -2.4 SEC-independent protein translocase protein compare
Atu1904 -1.2 -2.5 transcriptional regulator compare
Atu1780 -1.2 -5.4 ATP-dependent DNA helicase compare
Atu2267 -1.2 -3.4 hypothetical protein compare
Atu3012 -1.2 -1.6 hypothetical protein compare
Atu2045 -1.2 -3.5 HFLK protein compare
Atu0771 -1.2 -3.5 cytochrome c oxidase subunit III compare
Atu2590 -1.1 -4.0 hypothetical protein compare
Atu2662 -1.1 -1.1 acetyltransferase compare
Atu6131 -1.1 -3.0 TraR Antiactivator compare
Atu8169 -1.1 -2.3 hypothetical protein compare
Atu2650 -1.1 -3.8 glycerol-3-phosphate dehydrogenase compare
Atu4614 -1.1 -5.3 glycosyltransferase compare
Atu3215 -1.1 -3.1 oligopeptide ABC transporter ATPase compare
Atu1836 -1.1 -1.1 hypothetical protein compare
Atu0647 -1.1 -3.2 phosphoribosylamine--glycine ligase compare
Atu2801 -1.1 -2.3 precorrin-2 C20 methyltransferase compare
Atu0784 -1.1 -2.1 hypothetical protein compare
Atu0322 -1.1 -3.8 enoyl CoA hydratase compare
Atu1466 -1.1 -1.3 hypothetical protein compare
Atu0499 -1.1 -5.3 hypothetical protein compare
Atu2555 -1.1 -2.4 L-lysine 2,3-aminomutase compare
Atu0876 -1.1 -1.2 superoxide dismutase compare
Atu2057 -1.1 -2.1 DNA helicase II compare
Atu8165 -1.1 -2.0 hypothetical protein compare
Atu4540 -1.1 -1.6 protocatechuate 3,4-dioxygenase subunit beta compare
Atu2140 -1.1 -2.1 hypothetical protein compare
Atu2791 -1.1 -4.0 3-isopropylmalate dehydrogenase compare
Atu0659 -1.1 -2.9 NTP pyrophosphohydrolase, MutT family compare
Atu3121 -1.1 -0.8 cold shock protein compare
Atu6021 -1.0 -6.2 D-nopaline dehydrogenase compare
Atu5475 -1.0 -2.2 hypothetical protein compare
Atu3160 -1.0 -1.5 hypothetical protein compare
Atu2831 -1.0 -3.5 glucose inhibited division protein A compare
Atu2730 -1.0 -6.8 beta (1-->2) glucan biosynthesis protein compare
Atu1074 -1.0 -4.4 NAD/NADP dependent oxidoreductase compare
Atu8117 -1.0 -1.5 hypothetical protein compare
Atu0142 -1.0 -1.6 cytochrome o ubiquinol oxidase subunit II compare
Atu2378 -1.0 -1.7 hypothetical protein compare
Atu2709 -1.0 -5.8 3-isopropylmalate dehydratase, large subunit compare
Atu3219 -1.0 -5.4 dihydroxy-acid dehydratase compare
Atu5427 -1.0 -1.8 hypothetical protein compare
Atu3110 -1.0 -3.1 hypothetical protein compare
Atu0319 -1.0 -0.7 ubiquinone biosynthesis protein compare
Atu0073 -1.0 -3.3 recF-like protein compare
Atu0925 -1.0 -2.4 hypothetical protein compare
Atu0031 -1.0 -0.8 PTS system, IIA component compare
Atu4613 -1.0 -5.3 glycosyltransferase compare
Atu4317 -1.0 -1.1 TetR family transcriptional regulator compare
Atu8191 -1.0 -1.1 hypothetical protein compare
Atu2718 -1.0 -4.1 homoserine O-succinyltransferase compare
Atu0357 -1.0 -3.2 phosphate starvation inducible protein compare
Atu1323 -1.0 -1.2 hypothetical protein compare
Atu2375 -1.0 -3.3 UDP-hexose transferase compare
Atu1302 -1.0 -1.9 hypothetical protein compare
Atu0361 -1.0 -1.5 transcriptional regulator compare
Atu1028 -0.9 -1.4 hypothetical protein compare
Atu3688 -0.9 -1.7 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu2808 -0.9 -3.7 cobyric acid synthase compare
Atu2462 -0.9 -1.5 hypothetical protein compare
Atu1628 -0.9 -1.2 hypothetical protein compare
Atu3887 -0.9 -1.9 small heat shock protein compare
Atu6019 -0.9 -6.3 D-nopaline dehydrogenase compare
Atu1464 -0.9 -4.0 glycine cleavage system T protein, aminomethyltransferase compare
Atu4897 -0.9 -0.8 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms