Experiment set6IT040 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu3908 -6.1 -10.2 GntR family transcriptional regulator compare
Atu1750 -6.0 -3.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu2036 -5.5 -11.1 acetolactate synthase III, large subunit compare
Atu2289 -5.4 -17.2 anthranilate synthase component I and II compare
Atu0030 -5.2 -1.8 phosphocarrier protein HPr compare
Atu0017 -5.2 -3.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1687 -5.1 -11.0 anthranilate phosphoribosyltransferase compare
Atu3707 -5.0 -3.4 phosphoserine aminotransferase compare
Atu0537 -4.9 -4.8 histidinol dehydrogenase compare
Atu0678 -4.8 -6.6 histidyl-tRNA synthetase compare
Atu1688 -4.6 -6.3 indole-3-glycerol-phosphate synthase compare
Atu3912 -4.6 -8.8 hypothetical protein compare
Atu0679 -4.5 -6.2 ATP phosphoribosyltransferase compare
Atu0038 -4.5 -5.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0043 -4.5 -3.7 imidazoleglycerol-phosphate dehydratase compare
Atu3910 -4.4 -5.6 LamB/YcsF family protein compare
Atu1588 -4.4 -10.6 homoserine dehydrogenase compare
Atu3913 -4.2 -9.7 biotin carboxylase compare
Atu2040 -4.1 -6.8 phosphoserine phosphatase compare
Atu4773 -4.0 -1.9 two component response regulator compare
Atu1874 -3.9 -4.3 RecA protein compare
Atu0039 -3.8 -2.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu3730 -3.8 -2.3 hypothetical protein compare
Atu3706 -3.7 -9.1 D-3-phosphoglycerate dehydrogenase compare
Atu3885 -3.6 -11.0 inositol monophosphatase compare
Atu0269 -3.5 -5.9 exodeoxyribonuclease VII large subunit compare
Atu2728 -3.5 -2.4 beta (1-->2) glucan export ATP-binding protein compare
Atu1359 -3.5 -1.2 dnaK deletion suppressor protein compare
Atu1129 -3.4 -10.4 excinuclease ABC chain C compare
Atu0971 -3.4 -3.3 two component sensor kinase compare
Atu1205 -3.2 -12.5 threonine dehydratase compare
Atu1447 -3.1 -2.5 two component sensor kinase compare
Atu1030 -2.9 -1.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1077 -2.9 -4.5 DNA repair protein compare
Atu0977 -2.9 -5.7 serine protease DO-like protease compare
Atu3754 -2.8 -6.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2125 -2.8 -2.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu0073 -2.8 -8.7 recF-like protein compare
Atu1470 -2.8 -1.4 Camphor resistance protein compare
Atu2057 -2.8 -3.6 DNA helicase II compare
Atu0041 -2.8 -2.2 glutamine amidotransferase compare
Atu0093 -2.7 -6.5 Recombination protein compare
Atu2684 -2.7 -2.7 hypothetical protein compare
Atu0422 -2.6 -2.8 ABC transporter, membrane spanning protein compare
Atu0184 -2.6 -4.3 glucokinase compare
Atu1141 -2.5 -6.9 Phosphoribosylglycinamide synthetase compare
Atu1513 -2.5 -7.0 ABC excinuclease subunit A compare
Atu3469 -2.5 -3.6 phosphoglyceromutase compare
Atu2648 -2.5 -5.4 hypothetical protein compare
Atu0647 -2.4 -7.4 phosphoribosylamine--glycine ligase compare
Atu2083 -2.4 -3.6 DNA repair protein RecN compare
Atu2554 -2.4 -2.9 lysyl-tRNA synthetase compare
Atu4346 -2.4 -7.4 hypothetical protein compare
Atu0040 -2.4 -1.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3755 -2.4 -5.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1417 -2.3 -6.9 enoyl-CoA hydratase compare
Atu2207 -2.3 -4.8 two component sensor kinase compare
Atu1039 -2.2 -5.4 DNA repair protein RecO compare
Atu0421 -2.2 -1.9 ABC transporter, membrane spanning protein compare
Atu2439 -2.2 -1.8 hypothetical protein compare
Atu1075 -2.1 -7.6 amidophosphoribosyltransferase compare
Atu1850 -2.1 -4.4 phosphoribosylformylglycinamidine synthetase II compare
Atu6189 -2.0 -2.2 protein secretion chaperone compare
Atu1845 -2.0 -5.0 phosphoribosylformylglycinamidine synthase I compare
Atu1140 -2.0 -4.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0099 -2.0 -8.9 prephenate dehydratase compare
Atu2052 -1.9 -6.9 hypothetical protein compare
Atu8167 -1.9 -8.8 putative transmembrane protein compare
Atu3739 -1.9 -2.9 phosphoglycerate kinase compare
Atu1705 -1.9 -4.5 SEC-independent protein translocase protein compare
Atu0769 -1.9 -1.8 protoheme IX farnesyltransferase compare
Atu2824 -1.9 -4.5 hypothetical protein compare
Atu1163 -1.8 -2.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1364 -1.8 -5.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2368 -1.8 -1.5 hypothetical protein compare
Atu4055 -1.8 -6.2 endo-1,3-1,4-beta-glycanase compare
Atu2264 -1.8 -10.0 2-isopropylmalate synthase compare
Atu0361 -1.8 -3.1 transcriptional regulator compare
Atu4711 -1.8 -5.5 two component sensor kinase compare
Atu0895 -1.7 -3.3 ABC transporter, substrate binding protein compare
Atu0026 -1.7 -1.2 hypothetical protein compare
Atu4217 -1.7 -1.6 TetR family transcriptional regulator compare
Atu0399 -1.6 -6.9 dihydroorotase compare
Atu1327 -1.6 -3.1 NADH-ubiquinone oxidoreductase compare
Atu0331 -1.6 -1.9 sigma-54 modulation protein compare
Atu2662 -1.6 -1.0 acetyltransferase compare
Atu0401 -1.5 -3.7 fructokinase compare
Atu0876 -1.5 -1.5 superoxide dismutase compare
Atu4072 -1.5 -1.9 nodulation protein N compare
Atu0690 -1.5 -2.7 hypothetical protein compare
Atu4166 -1.5 -2.3 UDP-glucose 4-epimerase compare
Atu2650 -1.5 -7.5 glycerol-3-phosphate dehydrogenase compare
Atu8138 -1.5 -1.7 hypothetical protein compare
Atu4702 -1.5 -5.3 GntR family transcriptional regulator compare
Atu1354 -1.4 -1.3 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0784 -1.4 -3.4 hypothetical protein compare
Atu2709 -1.4 -9.4 3-isopropylmalate dehydratase, large subunit compare
Atu0141 -1.4 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu2730 -1.4 -8.9 beta (1-->2) glucan biosynthesis protein compare
Atu5464 -1.4 -7.7 IclR family transcriptional regulator compare
Atu3461 -1.4 -1.9 GntR family transcriptional regulator compare
Atu4532 -1.4 -6.9 shikimate 5-dehydrogenase compare
Atu3311 -1.4 -9.2 phosphomannose isomerase compare
Atu3911 -1.4 -2.4 hypothetical protein compare
Atu2791 -1.4 -5.4 3-isopropylmalate dehydrogenase compare
Atu2790 -1.4 -2.1 3-isopropylmalate dehydratase, small subunit compare
Atu2001 -1.4 -4.3 excinuclease ABC subunit B compare
Atu2606 -1.4 -5.2 transcriptional regulator, GntR family compare
Atu2692 -1.4 -3.0 intracellular septation protein compare
Atu1844 -1.4 -2.3 Phosphoribosylformylglycinamidine synthetase compare
Atu0029 -1.4 -3.8 S-adenosylhomocysteine hydrolase compare
Atu2379 -1.4 -7.2 phosphomannomutase compare
Atu2649 -1.3 -3.4 hypothetical protein compare
Atu3219 -1.3 -7.3 dihydroxy-acid dehydratase compare
Atu1052 -1.3 -2.9 hypothetical protein compare
Atu1454 -1.3 -6.2 siroheme synthase compare
Atu1589 -1.3 -4.5 aminotransferase, class I compare
Atu0062 -1.3 -5.9 transcriptional regulator, ROK family compare
Atu3763 -1.3 -2.0 hypothetical protein compare
Atu3353 -1.3 -7.9 mannose-1-phosphate guanylyltransferase compare
Atu0486 -1.3 -2.6 dihydroorotate dehydrogenase compare
Atu0978 -1.2 -4.5 two component response regulator compare
Atu0101 -1.2 -4.5 cytochrome c compare
Atu6131 -1.2 -3.8 TraR Antiactivator compare
Atu3963 -1.2 -5.5 GntR family transcriptional regulator compare
Atu1830 -1.2 -2.7 bacterioferritin comigratory protein compare
Atu1308 -1.2 -3.9 aspartate carbamoyl transferase catalytic subunit compare
Atu1110 -1.2 -2.1 cytosol aminopeptidase compare
Atu0142 -1.2 -2.4 cytochrome o ubiquinol oxidase subunit II compare
Atu2831 -1.2 -3.9 glucose inhibited division protein A compare
Atu5125 -1.2 -3.6 GntR family transcriptional regulator compare
Atu2801 -1.2 -2.6 precorrin-2 C20 methyltransferase compare
Atu2464 -1.2 -2.1 formyltetrahydrofolate deformylase compare
Atu0025 -1.2 -2.1 hypothetical protein compare
Atu4317 -1.2 -2.7 TetR family transcriptional regulator compare
Atu4173 -1.2 -1.6 phosphoenolpyruvate-protein phosphotransferase compare
Atu6019 -1.2 -8.9 D-nopaline dehydrogenase compare
Atu0031 -1.2 -1.2 PTS system, IIA component compare
Atu0354 -1.1 -1.9 ferric uptake regulator compare
Atu1456 -1.1 -6.3 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0298 -1.1 -5.7 orotidine 5 compare
Atu1307 -1.1 -3.1 dihydroorotase compare
Atu4641 -1.1 -3.0 LysR family transcriptional regulator compare
Atu0470 -1.1 -1.7 hypothetical protein compare
Atu1968 -1.1 -1.4 hypothetical protein compare
Atu6021 -1.1 -6.7 D-nopaline dehydrogenase compare
Atu4149 -1.1 -6.4 UDP-glucose 6-dehydrogenase compare
Atu2799 -1.1 -3.9 precorrin-6x reductase compare
Atu1686 -1.1 -7.4 peptidyl-prolyl cis-trans isomerse D compare
Atu3337 -1.1 -5.4 LacI family transcriptional regulator compare
Atu2795 -1.1 -4.5 cobalamin biosynthetic protein compare
Atu2579 -1.1 -4.9 metal dependant beta lactamase protein compare
Atu1422 -1.0 -5.6 transcriptional regulator, MarR family compare
Atu4018 -1.0 -5.6 two component sensor kinase compare
Atu4157 -1.0 -7.9 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
Atu0050 -1.0 -2.5 two component response regulator compare
Atu2376 -1.0 -2.1 hypothetical protein compare
Atu2592 -1.0 -5.2 hypothetical protein compare
Atu2584 -1.0 -3.8 hypothetical protein compare
Atu0499 -1.0 -4.2 hypothetical protein compare
Atu6114 -1.0 -1.7 hypothetical protein compare
Atu1780 -1.0 -5.8 ATP-dependent DNA helicase compare
Atu2620 -1.0 -1.1 hypothetical protein compare
Atu0432 -1.0 -4.3 O-succinylhomoserine sulfhydrylase compare
Atu1739 -1.0 -3.0 permease compare
Atu4505 -1.0 -4.7 LacI family transcriptional regulator compare
Atu1634 -1.0 -1.5 hypothetical protein compare
Atu0434 -1.0 -1.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2718 -1.0 -3.7 homoserine O-succinyltransferase compare
Atu4148 -1.0 -3.7 UDP-glucuronic acid epimerase compare
Atu2798 -1.0 -2.1 precorrin-6y methyltransferase compare
Atu3971 -1.0 -6.0 dihydroxy-acid dehydratase compare
Atu0723 -0.9 -1.1 FAD dependent oxidoreductase compare
Atu2682 -0.9 -2.4 hypothetical protein compare
Atu2522 -0.9 -5.8 agrobacterium chromosomal virulence protein B compare
Atu4019 -0.9 -4.3 two component response regulator compare
Atu2590 -0.9 -4.7 hypothetical protein compare
Atu4610 -0.9 -5.6 sugar nucleotide epimerase/dehydratase compare
Atu1251 -0.9 -4.9 O-acetylhomoserine sulfhydrylase compare
Atu2304 -0.9 -4.5 bacteroid development protein compare
Atu0086 -0.9 -0.8 ribosome-binding factor A compare
Atu2583 -0.9 -4.8 glycosyltransferase compare
Atu1103 -0.9 -2.3 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0036 -0.9 -1.6 hypothetical protein compare
Atu1285 -0.9 -4.6 metal dependent hydrolase compare
Atu0205 -0.9 -4.9 methylmalonate-semialdehyde dehydrogenase compare
Atu0979 -0.9 -3.6 two component sensor kinase compare
Atu0477 -0.9 -1.3 hypothetical protein compare
Atu2155 -0.9 -6.9 methionine synthase compare
Atu1546 -0.9 -3.3 transcriptional regulator, MerR family compare
Atu0291 -0.9 -4.7 hypothetical protein compare
Atu0328 -0.9 -4.6 heat-inducible transcription repressor compare
Atu4418 -0.9 -2.6 glutaryl-CoA dehydrogenase compare
Atu0225 -0.9 -0.7 hypothetical protein compare
Atu6020 -0.9 -4.2 conserved hypothetical protein compare
Atu0923 -0.9 -2.8 hypothetical protein compare
Atu2598 -0.9 -3.3 transcriptional regulator, RpiR family compare
Atu3279 -0.8 -4.4 methanesulfonate sulfonatase compare
Atu2591 -0.8 -4.2 glucosyltransferase compare
Atu4364 -0.8 -3.5 LacI family transcriptional regulator compare


Specific Phenotypes

For 7 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms