Experiment set6IT039 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu0331 -4.5 -3.1 sigma-54 modulation protein compare
Atu2057 -3.7 -3.6 DNA helicase II compare
Atu3908 -3.7 -13.8 GntR family transcriptional regulator compare
Atu2036 -3.6 -13.6 acetolactate synthase III, large subunit compare
Atu0030 -3.6 -2.2 phosphocarrier protein HPr compare
Atu2728 -3.5 -2.4 beta (1-->2) glucan export ATP-binding protein compare
Atu6098 -3.1 -1.3 transcriptional regulator, HTH family compare
Atu1417 -3.1 -7.4 enoyl-CoA hydratase compare
Atu0041 -3.0 -2.9 glutamine amidotransferase compare
Atu1588 -3.0 -10.3 homoserine dehydrogenase compare
Atu1874 -2.9 -3.9 RecA protein compare
Atu0039 -2.9 -2.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu1750 -2.8 -5.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu0679 -2.8 -6.4 ATP phosphoribosyltransferase compare
Atu0537 -2.6 -8.1 histidinol dehydrogenase compare
Atu0399 -2.5 -8.2 dihydroorotase compare
Atu2289 -2.5 -13.9 anthranilate synthase component I and II compare
Atu3707 -2.4 -3.5 phosphoserine aminotransferase compare
Atu1687 -2.3 -9.2 anthranilate phosphoribosyltransferase compare
Atu0086 -2.3 -1.9 ribosome-binding factor A compare
Atu0040 -2.3 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0298 -2.3 -8.4 orotidine 5 compare
Atu1308 -2.2 -7.1 aspartate carbamoyl transferase catalytic subunit compare
Atu0678 -2.2 -7.2 histidyl-tRNA synthetase compare
Atu1077 -2.2 -5.2 DNA repair protein compare
Atu1141 -2.2 -6.2 Phosphoribosylglycinamide synthetase compare
Atu3755 -2.2 -5.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1513 -2.2 -6.8 ABC excinuclease subunit A compare
Atu2439 -2.2 -1.4 hypothetical protein compare
Atu1688 -2.1 -6.5 indole-3-glycerol-phosphate synthase compare
Atu0141 -2.1 -2.4 cytochrome O ubiquinol oxidase subunit I compare
Atu1205 -2.1 -11.5 threonine dehydratase compare
Atu3754 -2.0 -4.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1359 -2.0 -1.2 dnaK deletion suppressor protein compare
Atu2522 -2.0 -11.1 agrobacterium chromosomal virulence protein B compare
Atu0977 -2.0 -3.9 serine protease DO-like protease compare
Atu2662 -2.0 -2.3 acetyltransferase compare
Atu3910 -2.0 -5.4 LamB/YcsF family protein compare
Atu0038 -2.0 -4.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0647 -1.9 -7.2 phosphoribosylamine--glycine ligase compare
Atu3763 -1.9 -2.3 hypothetical protein compare
Atu0400 -1.9 -4.9 orotate phosphoribosyltransferase compare
Atu0971 -1.9 -3.7 two component sensor kinase compare
Atu0486 -1.9 -5.6 dihydroorotate dehydrogenase compare
Atu0043 -1.9 -3.0 imidazoleglycerol-phosphate dehydratase compare
Atu0017 -1.9 -2.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2207 -1.9 -3.6 two component sensor kinase compare
Atu2790 -1.9 -2.5 3-isopropylmalate dehydratase, small subunit compare
Atu1225 -1.9 -2.4 hypothetical protein compare
Atu0093 -1.8 -5.1 Recombination protein compare
Atu1039 -1.8 -4.4 DNA repair protein RecO compare
Atu1075 -1.8 -6.9 amidophosphoribosyltransferase compare
Atu0269 -1.8 -4.8 exodeoxyribonuclease VII large subunit compare
Atu1129 -1.8 -7.5 excinuclease ABC chain C compare
Atu1140 -1.8 -3.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0073 -1.7 -6.9 recF-like protein compare
Atu2239 -1.7 -3.9 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2183 -1.7 -8.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0976 -1.7 -3.5 cycL protein compare
Atu4166 -1.7 -2.6 UDP-glucose 4-epimerase compare
Atu4055 -1.7 -6.3 endo-1,3-1,4-beta-glycanase compare
Atu0925 -1.7 -2.4 hypothetical protein compare
Atu3461 -1.6 -1.7 GntR family transcriptional regulator compare
Atu4711 -1.6 -5.5 two component sensor kinase compare
Atu3739 -1.6 -3.4 phosphoglycerate kinase compare
Atu0421 -1.6 -1.9 ABC transporter, membrane spanning protein compare
Atu4346 -1.6 -3.7 hypothetical protein compare
Atu2650 -1.6 -7.4 glycerol-3-phosphate dehydrogenase compare
Atu3706 -1.6 -6.8 D-3-phosphoglycerate dehydrogenase compare
Atu1364 -1.6 -5.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu8167 -1.6 -8.7 putative transmembrane protein compare
Atu3311 -1.5 -10.6 phosphomannose isomerase compare
Atu1422 -1.5 -7.6 transcriptional regulator, MarR family compare
Atu3299 -1.5 -2.8 hypothetical protein compare
Atu6131 -1.5 -4.9 TraR Antiactivator compare
Atu0784 -1.5 -3.9 hypothetical protein compare
Atu0422 -1.5 -2.3 ABC transporter, membrane spanning protein compare
Atu3663 -1.5 -1.0 hypothetical protein compare
Atu2235 -1.5 -2.8 hypothetical protein compare
Atu0876 -1.5 -1.6 superoxide dismutase compare
Atu2379 -1.5 -6.2 phosphomannomutase compare
Atu1850 -1.5 -4.2 phosphoribosylformylglycinamidine synthetase II compare
Atu1447 -1.5 -2.4 two component sensor kinase compare
Atu8025 -1.4 -1.3 hypothetical protein compare
Atu3912 -1.4 -5.2 hypothetical protein compare
Atu1683 -1.4 -2.2 hypothetical protein compare
Atu1845 -1.4 -4.4 phosphoribosylformylglycinamidine synthase I compare
Atu1602 -1.4 -5.7 transcriptional activator, Crp family compare
Atu2083 -1.4 -3.5 DNA repair protein RecN compare
Atu1307 -1.4 -5.4 dihydroorotase compare
Atu1163 -1.4 -2.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3353 -1.4 -7.9 mannose-1-phosphate guanylyltransferase compare
Atu3913 -1.3 -4.6 biotin carboxylase compare
Atu5430 -1.3 -1.3 hypothetical protein compare
Atu4614 -1.3 -5.9 glycosyltransferase compare
Atu4610 -1.3 -7.5 sugar nucleotide epimerase/dehydratase compare
Atu2052 -1.3 -5.5 hypothetical protein compare
Atu2073 -1.3 -4.8 membrane protein compare
Atu0824 -1.3 -1.2 hypothetical protein compare
Atu2264 -1.2 -8.0 2-isopropylmalate synthase compare
Atu0677 -1.2 -1.6 hypothetical protein compare
Atu0973 -1.2 -6.6 cycH protein compare
Atu4618 -1.2 -7.0 dTDP-rhamnose-3,5-epimerase compare
Atu0101 -1.2 -2.6 cytochrome c compare
Atu1074 -1.2 -6.3 NAD/NADP dependent oxidoreductase compare
Atu4613 -1.2 -8.4 glycosyltransferase compare
Atu0161 -1.2 -7.1 biopolymer transport protein compare
Atu1327 -1.2 -2.6 NADH-ubiquinone oxidoreductase compare
Atu0641 -1.2 -3.2 hypothetical protein compare
Atu4616 -1.2 -1.2 dTDP-4-dehydrorhamnose reductase compare
Atu2791 -1.1 -5.2 3-isopropylmalate dehydrogenase compare
Atu1354 -1.1 -1.4 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu4792 -1.1 -1.6 hypothetical protein compare
Atu4407 -1.1 -3.4 periplasmic nitrate reductase, NapD protein compare
Atu8096 -1.1 -1.4 hypothetical protein compare
Atu2730 -1.1 -7.8 beta (1-->2) glucan biosynthesis protein compare
Atu4617 -1.1 -5.8 dTDP-D-glucose-4,6-dehydratase compare
Atu1780 -1.1 -6.3 ATP-dependent DNA helicase compare
Atu1537 -1.1 -6.4 cytochrome-c oxidase, FixN chain compare
Atu3712 -1.1 -1.4 hypothetical protein compare
Atu0401 -1.0 -3.5 fructokinase compare
Atu1028 -1.0 -2.0 hypothetical protein compare
Atu2376 -1.0 -1.6 hypothetical protein compare
Atu1530 -1.0 -5.6 nitrogen fixation protein FixG compare
Atu1468 -1.0 -5.0 hypothetical protein compare
Atu0051 -1.0 -3.5 two component sensor kinase compare
Atu3110 -1.0 -4.3 hypothetical protein compare
Atu1103 -1.0 -2.4 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1173 -1.0 -5.6 MFS permease compare
Atu2238 -1.0 -4.8 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1645 -1.0 -4.3 ABC transporter, substrate binding protein compare
Atu1844 -1.0 -1.7 Phosphoribosylformylglycinamidine synthetase compare
Atu1527 -1.0 -4.0 nitrogen fixation protein FixS compare
Atu0361 -0.9 -1.9 transcriptional regulator compare
Atu4702 -0.9 -4.0 GntR family transcriptional regulator compare
Atu6021 -0.9 -6.3 D-nopaline dehydrogenase compare
Atu2040 -0.9 -3.7 phosphoserine phosphatase compare
Atu4773 -0.9 -1.5 two component response regulator compare
Atu1251 -0.9 -5.4 O-acetylhomoserine sulfhydrylase compare
Atu5125 -0.9 -3.3 GntR family transcriptional regulator compare
Atu0895 -0.9 -1.9 ABC transporter, substrate binding protein compare
Atu8052 -0.9 -1.1 hypothetical protein compare
Atu1904 -0.9 -2.3 transcriptional regulator compare
Atu2001 -0.9 -4.7 excinuclease ABC subunit B compare
Atu1705 -0.9 -2.3 SEC-independent protein translocase protein compare
Atu3095 -0.9 -2.1 hypothetical protein compare
Atu0923 -0.9 -3.2 hypothetical protein compare
Atu1536 -0.9 -3.1 cytochrome C oxidase, FixO chain compare
Atu1647 -0.9 -4.6 ABC transporter, membrane spanning protein compare
Atu0328 -0.9 -4.3 heat-inducible transcription repressor compare
Atu0050 -0.9 -2.7 two component response regulator compare
Atu0533 -0.9 -1.5 putative inhibitor of septum formation compare
Atu2684 -0.9 -1.2 hypothetical protein compare
Atu2592 -0.9 -4.2 hypothetical protein compare
Atu3012 -0.9 -1.2 hypothetical protein compare
Atu1470 -0.9 -0.8 Camphor resistance protein compare
Atu2768 -0.9 -3.9 hypothetical protein compare
Atu2709 -0.9 -6.2 3-isopropylmalate dehydratase, large subunit compare
Atu0769 -0.9 -1.2 protoheme IX farnesyltransferase compare
Atu3750 -0.9 -2.0 thiamine-phosphate pyrophosphorylase compare
Atu1803 -0.9 -3.3 cold shock protein compare
Atu1285 -0.9 -4.0 metal dependent hydrolase compare
Atu0162 -0.9 -2.5 biopolymer transport protein compare
Atu5160 -0.9 -2.1 transcriptional regulator protein compare
Atu2633 -0.9 -1.8 RhtB family transporter compare
Atu1535 -0.8 -2.1 cytochrome c oxidase, FixQ chain compare
Atu0580 -0.8 -2.9 flagellar biosynthetic protein compare
Atu0029 -0.8 -3.0 S-adenosylhomocysteine hydrolase compare
Atu0499 -0.8 -4.5 hypothetical protein compare
Atu3465 -0.8 -2.3 metallo-beta-lactamase superfamily protein compare
Atu1528 -0.8 -5.9 nitrogen fixation protein FixI compare
Atu3469 -0.8 -2.3 phosphoglyceromutase compare
Atu8138 -0.8 -0.9 hypothetical protein compare
Atu0659 -0.8 -3.1 NTP pyrophosphohydrolase, MutT family compare
Atu8087 -0.8 -0.7 putative peptidoglycan binding protein compare
Atu1774 -0.8 -3.7 ABC transporter, substrate binding protein (peptide) compare
Atu0771 -0.8 -3.4 cytochrome c oxidase subunit III compare
Atu0953 -0.8 -0.9 hypothetical protein compare
Atu1708 -0.8 -4.4 hypothetical protein compare
Atu2648 -0.8 -2.2 hypothetical protein compare
Atu1644 -0.8 -1.8 hypothetical protein compare
Atu0768 -0.8 -5.1 cytochrome-c oxidase chain I compare
Atu8117 -0.8 -1.7 hypothetical protein compare
Atu2464 -0.8 -1.8 formyltetrahydrofolate deformylase compare
Atu0163 -0.8 -3.9 tonB protein compare
Atu1258 -0.8 -3.5 ATP-dependent Clp protease, proteolytic subunit compare
Atu2640 -0.8 -2.5 hypothetical protein compare
Atu1534 -0.8 -3.2 cytochrome-c oxidase, FixP chain compare
Atu3719 -0.8 -3.1 MutT/nudix family protein compare
Atu3885 -0.8 -3.1 inositol monophosphatase compare
Atu0189 -0.8 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu0979 -0.8 -3.1 two component sensor kinase compare
Atu2692 -0.8 -2.2 intracellular septation protein compare
Atu0291 -0.8 -3.9 hypothetical protein compare
Atu0062 -0.7 -3.4 transcriptional regulator, ROK family compare
Atu0905 -0.7 -3.0 dnaK suppressor protein compare
Atu4223 -0.7 -1.3 sarcosine oxidase delta subunit compare
Atu3598 -0.7 -1.2 thiol:disulfide interchange protein compare
Atu2304 -0.7 -4.5 bacteroid development protein compare
Atu3911 -0.7 -2.3 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms