Experiment set6IT036 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu0030 -5.0 -1.9 phosphocarrier protein HPr compare
Atu2036 -4.8 -13.4 acetolactate synthase III, large subunit compare
Atu0678 -3.9 -7.0 histidyl-tRNA synthetase compare
Atu1588 -3.8 -10.2 homoserine dehydrogenase compare
Atu1687 -3.7 -10.9 anthranilate phosphoribosyltransferase compare
Atu3908 -3.6 -13.1 GntR family transcriptional regulator compare
Atu1750 -3.6 -5.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu2289 -3.5 -16.9 anthranilate synthase component I and II compare
Atu0043 -3.5 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu0093 -3.4 -5.6 Recombination protein compare
Atu0679 -3.3 -6.7 ATP phosphoribosyltransferase compare
Atu1077 -3.2 -4.8 DNA repair protein compare
Atu3706 -3.1 -7.4 D-3-phosphoglycerate dehydrogenase compare
Atu6098 -3.1 -1.2 transcriptional regulator, HTH family compare
Atu1417 -3.0 -9.0 enoyl-CoA hydratase compare
Atu1874 -3.0 -3.6 RecA protein compare
Atu0039 -3.0 -2.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu1364 -3.0 -6.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3707 -3.0 -4.0 phosphoserine aminotransferase compare
Atu2057 -3.0 -4.0 DNA helicase II compare
Atu1205 -2.9 -12.8 threonine dehydratase compare
Atu4773 -2.9 -2.2 two component response regulator compare
Atu8096 -2.9 -1.9 hypothetical protein compare
Atu1688 -2.9 -8.1 indole-3-glycerol-phosphate synthase compare
Atu2728 -2.8 -3.8 beta (1-->2) glucan export ATP-binding protein compare
Atu0537 -2.8 -7.2 histidinol dehydrogenase compare
Atu1850 -2.7 -3.3 phosphoribosylformylglycinamidine synthetase II compare
Atu0017 -2.6 -3.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3763 -2.6 -2.4 hypothetical protein compare
Atu0038 -2.6 -4.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2125 -2.5 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu3755 -2.5 -5.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3885 -2.4 -7.4 inositol monophosphatase compare
Atu1535 -2.3 -4.5 cytochrome c oxidase, FixQ chain compare
Atu2207 -2.3 -4.1 two component sensor kinase compare
Atu0777 -2.3 -1.2 hypothetical protein compare
Atu2083 -2.3 -2.6 DNA repair protein RecN compare
Atu2040 -2.3 -5.1 phosphoserine phosphatase compare
Atu4407 -2.2 -2.7 periplasmic nitrate reductase, NapD protein compare
Atu3912 -2.2 -7.5 hypothetical protein compare
Atu4166 -2.2 -2.6 UDP-glucose 4-epimerase compare
Atu0331 -2.2 -2.7 sigma-54 modulation protein compare
Atu3754 -2.2 -5.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2432 -2.2 -2.1 hypothetical protein compare
Atu1513 -2.1 -6.1 ABC excinuclease subunit A compare
Atu3663 -2.1 -1.1 hypothetical protein compare
Atu0647 -2.1 -7.4 phosphoribosylamine--glycine ligase compare
Atu0769 -2.1 -2.2 protoheme IX farnesyltransferase compare
Atu0101 -2.1 -5.3 cytochrome c compare
Atu0041 -2.1 -1.7 glutamine amidotransferase compare
Atu1129 -2.1 -8.7 excinuclease ABC chain C compare
Atu6189 -2.0 -2.2 protein secretion chaperone compare
Atu1140 -1.9 -3.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3739 -1.9 -3.4 phosphoglycerate kinase compare
Atu0269 -1.9 -4.7 exodeoxyribonuclease VII large subunit compare
Atu0971 -1.9 -3.8 two component sensor kinase compare
Atu2662 -1.9 -1.4 acetyltransferase compare
Atu0073 -1.8 -5.9 recF-like protein compare
Atu4610 -1.8 -7.9 sugar nucleotide epimerase/dehydratase compare
Atu3913 -1.8 -5.9 biotin carboxylase compare
Atu1470 -1.8 -1.2 Camphor resistance protein compare
Atu1141 -1.8 -4.9 Phosphoribosylglycinamide synthetase compare
Atu0399 -1.7 -5.0 dihydroorotase compare
Atu2379 -1.7 -6.9 phosphomannomutase compare
Atu3910 -1.7 -4.9 LamB/YcsF family protein compare
Atu2791 -1.7 -7.0 3-isopropylmalate dehydrogenase compare
Atu0486 -1.7 -5.5 dihydroorotate dehydrogenase compare
Atu2376 -1.7 -3.6 hypothetical protein compare
Atu0977 -1.6 -3.3 serine protease DO-like protease compare
Atu1039 -1.6 -4.3 DNA repair protein RecO compare
Atu2239 -1.6 -3.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2264 -1.6 -9.1 2-isopropylmalate synthase compare
Atu0978 -1.6 -6.1 two component response regulator compare
Atu3311 -1.6 -9.2 phosphomannose isomerase compare
Atu2650 -1.6 -7.3 glycerol-3-phosphate dehydrogenase compare
Atu1075 -1.6 -6.0 amidophosphoribosyltransferase compare
Atu0099 -1.5 -6.6 prephenate dehydratase compare
Atu0641 -1.5 -3.3 hypothetical protein compare
Atu2183 -1.5 -6.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0401 -1.5 -3.5 fructokinase compare
Atu1327 -1.5 -2.4 NADH-ubiquinone oxidoreductase compare
Atu1163 -1.5 -2.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu5164 -1.5 -1.2 type IV secretion protein AvhB3 compare
Atu2052 -1.5 -5.6 hypothetical protein compare
Atu2235 -1.5 -2.5 hypothetical protein compare
Atu2709 -1.5 -11.2 3-isopropylmalate dehydratase, large subunit compare
Atu2790 -1.5 -2.0 3-isopropylmalate dehydratase, small subunit compare
Atu1845 -1.5 -4.1 phosphoribosylformylglycinamidine synthase I compare
Atu3353 -1.5 -7.6 mannose-1-phosphate guanylyltransferase compare
Atu0205 -1.5 -8.3 methylmalonate-semialdehyde dehydrogenase compare
Atu2684 -1.5 -1.3 hypothetical protein compare
Atu1447 -1.4 -2.4 two component sensor kinase compare
Atu3598 -1.4 -2.0 thiol:disulfide interchange protein compare
Atu8167 -1.4 -8.4 putative transmembrane protein compare
Atu4711 -1.4 -4.2 two component sensor kinase compare
Atu8138 -1.4 -1.7 hypothetical protein compare
Atu2800 -1.4 -2.3 precorrin-3B C17-methyltransferase compare
Atu1810 -1.4 -1.3 hypothetical protein compare
Atu0040 -1.4 -1.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4346 -1.4 -4.4 hypothetical protein compare
Atu0029 -1.4 -4.6 S-adenosylhomocysteine hydrolase compare
Atu1074 -1.4 -6.9 NAD/NADP dependent oxidoreductase compare
Atu1705 -1.4 -3.8 SEC-independent protein translocase protein compare
Atu1307 -1.4 -3.5 dihydroorotase compare
Atu2001 -1.4 -5.9 excinuclease ABC subunit B compare
Atu1030 -1.4 -1.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0161 -1.3 -6.2 biopolymer transport protein compare
Atu0533 -1.3 -2.0 putative inhibitor of septum formation compare
Atu3469 -1.3 -3.1 phosphoglyceromutase compare
Atu0566 -1.3 -1.3 hypothetical protein compare
Atu2237 -1.3 -3.3 cytochrome c1 compare
Atu1464 -1.3 -4.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu2799 -1.3 -3.3 precorrin-6x reductase compare
Atu0050 -1.3 -4.3 two component response regulator compare
Atu2238 -1.3 -6.0 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0162 -1.3 -6.3 biopolymer transport protein compare
Atu0894 -1.3 -1.6 ABC transporter, membrane spanning protein compare
Atu0141 -1.3 -1.7 cytochrome O ubiquinol oxidase subunit I compare
Atu1354 -1.2 -1.2 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu4618 -1.2 -6.2 dTDP-rhamnose-3,5-epimerase compare
Atu3730 -1.2 -1.1 hypothetical protein compare
Atu1308 -1.2 -3.0 aspartate carbamoyl transferase catalytic subunit compare
Atu2592 -1.2 -4.4 hypothetical protein compare
Atu4072 -1.2 -1.4 nodulation protein N compare
Atu4615 -1.2 -6.0 glucose-1-phosphate thymidylyltransferase compare
Atu1602 -1.2 -4.4 transcriptional activator, Crp family compare
Atu1536 -1.2 -4.0 cytochrome C oxidase, FixO chain compare
Atu0163 -1.2 -4.9 tonB protein compare
Atu1836 -1.2 -1.5 hypothetical protein compare
Atu1359 -1.2 -0.7 dnaK deletion suppressor protein compare
Atu1530 -1.2 -5.9 nitrogen fixation protein FixG compare
Atu0572 -1.2 -1.7 hypothetical protein compare
Atu6021 -1.2 -7.1 D-nopaline dehydrogenase compare
Atu0031 -1.1 -1.2 PTS system, IIA component compare
Atu1219 -1.1 -1.0 hypothetical protein compare
Atu0979 -1.1 -6.2 two component sensor kinase compare
Atu3750 -1.1 -2.2 thiamine-phosphate pyrophosphorylase compare
Atu2522 -1.1 -6.0 agrobacterium chromosomal virulence protein B compare
Atu6019 -1.1 -8.1 D-nopaline dehydrogenase compare
Atu0298 -1.1 -3.7 orotidine 5 compare
Atu1528 -1.1 -7.0 nitrogen fixation protein FixI compare
Atu3299 -1.1 -1.6 hypothetical protein compare
Atu3692 -1.1 -3.1 sigma factor compare
Atu1537 -1.1 -5.1 cytochrome-c oxidase, FixN chain compare
Atu6131 -1.1 -3.0 TraR Antiactivator compare
Atu2184 -1.1 -3.0 transcriptional regulator, AsnC family compare
Atu4614 -1.0 -4.8 glycosyltransferase compare
Atu0188 -1.0 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu0660 -1.0 -5.5 hydrolase compare
Atu1518 -1.0 -3.1 transcriptional regulator, Fur family compare
Atu2554 -1.0 -1.8 lysyl-tRNA synthetase compare
Atu1527 -1.0 -3.7 nitrogen fixation protein FixS compare
Atu0690 -1.0 -1.6 hypothetical protein compare
Atu5125 -1.0 -4.1 GntR family transcriptional regulator compare
Atu1645 -1.0 -4.8 ABC transporter, substrate binding protein compare
Atu0142 -1.0 -2.4 cytochrome o ubiquinol oxidase subunit II compare
Atu8052 -1.0 -1.2 hypothetical protein compare
Atu3468 -1.0 -0.7 hypothetical protein compare
Atu2484 -1.0 -1.1 hypothetical protein compare
Atu2045 -1.0 -3.5 HFLK protein compare
Atu1647 -1.0 -4.1 ABC transporter, membrane spanning protein compare
Atu2590 -1.0 -4.4 hypothetical protein compare
Atu1620 -1.0 -5.5 triosephosphate isomerase compare
Atu1380 -1.0 -4.6 zinc metallopeptidase compare
Atu3757 -1.0 -1.4 hypothetical protein compare
Atu6020 -1.0 -4.0 conserved hypothetical protein compare
Atu1529 -1.0 -3.3 nitrogen fixation protein FixH compare
Atu1260 -1.0 -1.1 hypothetical protein compare
Atu1534 -1.0 -4.9 cytochrome-c oxidase, FixP chain compare
Atu4702 -1.0 -2.8 GntR family transcriptional regulator compare
Atu2591 -1.0 -4.0 glucosyltransferase compare
Atu0905 -1.0 -2.8 dnaK suppressor protein compare
Atu0340 -1.0 -1.5 SAM dependent methyltransferase compare
Atu5427 -0.9 -2.9 hypothetical protein compare
Atu2722 -0.9 -4.2 porin compare
Atu3740 -0.9 -3.8 fructose bisphosphate aldolase compare
Atu2649 -0.9 -2.7 hypothetical protein compare
Atu1103 -0.9 -2.5 rRNA-adenine N6,N6-dimethyltransferase compare
Atu4608 -0.9 -5.8 hypothetical protein compare
Atu4613 -0.9 -5.9 glycosyltransferase compare
Atu3971 -0.9 -6.6 dihydroxy-acid dehydratase compare
Atu0771 -0.9 -3.3 cytochrome c oxidase subunit III compare
Atu0036 -0.9 -1.9 hypothetical protein compare
Atu0400 -0.9 -2.5 orotate phosphoribosyltransferase compare
Atu3219 -0.9 -5.6 dihydroxy-acid dehydratase compare
Atu2692 -0.9 -2.4 intracellular septation protein compare
Atu3115 -0.9 -2.6 TetR family transcriptional regulator compare
Atu0499 -0.9 -4.2 hypothetical protein compare
Atu2555 -0.9 -2.2 L-lysine 2,3-aminomutase compare
Atu1707 -0.9 -4.0 hypothetical protein compare
Atu2648 -0.9 -2.0 hypothetical protein compare
Atu3688 -0.9 -2.1 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu1176 -0.9 -3.6 hypothetical protein compare
Atu2267 -0.9 -3.5 hypothetical protein compare
Atu1780 -0.9 -4.6 ATP-dependent DNA helicase compare
Atu0280 -0.9 -1.6 hypothetical protein compare
Atu0184 -0.9 -2.3 glucokinase compare
Atu1422 -0.9 -4.1 transcriptional regulator, MarR family compare
Atu4317 -0.9 -1.6 TetR family transcriptional regulator compare
Atu1689 -0.9 -1.6 molybdenum cofactor biosynthesis protein C compare


Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms