Experiment set6IT036 for Agrobacterium fabrum C58
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Group: in plantaMedia: + Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Culturing: Agro_ML11, at 30 (C)
By: Mitchell Thompson on 12/1/21
Specific Phenotypes
For 3 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA repair, bacterial RecFOR pathway | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Urea cycle and metabolism of amino groups
- Arginine and proline metabolism
- Fatty acid biosynthesis
- Atrazine degradation
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| urea degradation I | 3 | 3 | 3 |
| superpathway of allantoin degradation in yeast | 6 | 3 | 3 |
| cyanuric acid degradation II | 5 | 3 | 2 |
| cyanuric acid degradation I | 5 | 2 | 2 |
| L-citrulline degradation | 3 | 3 | 1 |
| cyanate degradation | 3 | 2 | 1 |
| biotin-carboxyl carrier protein assembly | 4 | 4 | 1 |
| L-arginine degradation V (arginine deiminase pathway) | 4 | 3 | 1 |
| superpathway of atrazine degradation | 8 | 3 | 2 |
| uracil degradation III | 5 | 5 | 1 |
| allantoin degradation IV (anaerobic) | 9 | 4 | 1 |
| 3-hydroxypropanoate cycle | 13 | 8 | 1 |
| glyoxylate assimilation | 13 | 5 | 1 |
| 3-hydroxypropanoate/4-hydroxybutanate cycle | 18 | 11 | 1 |
| superpathway of the 3-hydroxypropanoate cycle | 18 | 8 | 1 |