Experiment set6IT035 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu2036 -5.6 -10.1 acetolactate synthase III, large subunit compare
Atu3908 -5.5 -11.1 GntR family transcriptional regulator compare
Atu2289 -5.3 -15.0 anthranilate synthase component I and II compare
Atu1750 -5.2 -2.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu1588 -5.1 -8.5 homoserine dehydrogenase compare
Atu0678 -5.1 -4.9 histidyl-tRNA synthetase compare
Atu0030 -4.9 -1.5 phosphocarrier protein HPr compare
Atu0017 -4.9 -3.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1687 -4.8 -10.3 anthranilate phosphoribosyltransferase compare
Atu0679 -4.8 -6.5 ATP phosphoribosyltransferase compare
Atu1874 -4.6 -3.2 RecA protein compare
Atu0043 -4.6 -3.1 imidazoleglycerol-phosphate dehydratase compare
Atu1688 -4.4 -7.3 indole-3-glycerol-phosphate synthase compare
Atu0038 -4.3 -4.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1205 -4.1 -12.0 threonine dehydratase compare
Atu0537 -4.0 -7.6 histidinol dehydrogenase compare
Atu1039 -3.7 -4.1 DNA repair protein RecO compare
Atu4773 -3.7 -1.6 two component response regulator compare
Atu2057 -3.7 -3.5 DNA helicase II compare
Atu3730 -3.6 -1.9 hypothetical protein compare
Atu3706 -3.5 -8.7 D-3-phosphoglycerate dehydrogenase compare
Atu0039 -3.5 -2.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu2083 -3.4 -4.4 DNA repair protein RecN compare
Atu1129 -3.4 -9.9 excinuclease ABC chain C compare
Atu3913 -3.4 -9.1 biotin carboxylase compare
Atu2728 -3.3 -2.3 beta (1-->2) glucan export ATP-binding protein compare
Atu0641 -3.2 -3.3 hypothetical protein compare
Atu3885 -3.2 -8.4 inositol monophosphatase compare
Atu0093 -3.2 -5.6 Recombination protein compare
Atu3912 -3.1 -8.1 hypothetical protein compare
Atu0073 -3.1 -7.8 recF-like protein compare
Atu2648 -3.0 -5.4 hypothetical protein compare
Atu4166 -3.0 -2.0 UDP-glucose 4-epimerase compare
Atu4317 -3.0 -3.3 TetR family transcriptional regulator compare
Atu3763 -3.0 -2.0 hypothetical protein compare
Atu0101 -2.9 -4.4 cytochrome c compare
Atu1030 -2.9 -1.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2264 -2.9 -10.4 2-isopropylmalate synthase compare
Atu2791 -2.8 -5.9 3-isopropylmalate dehydrogenase compare
Atu1513 -2.8 -7.2 ABC excinuclease subunit A compare
Atu3910 -2.8 -6.0 LamB/YcsF family protein compare
Atu1077 -2.8 -5.2 DNA repair protein compare
Atu3755 -2.7 -5.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0977 -2.7 -5.0 serine protease DO-like protease compare
Atu2040 -2.7 -4.8 phosphoserine phosphatase compare
Atu0269 -2.6 -5.1 exodeoxyribonuclease VII large subunit compare
Atu1417 -2.6 -7.3 enoyl-CoA hydratase compare
Atu1810 -2.6 -1.0 hypothetical protein compare
Atu0041 -2.5 -1.8 glutamine amidotransferase compare
Atu0690 -2.4 -2.8 hypothetical protein compare
Atu1163 -2.4 -2.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0971 -2.4 -4.2 two component sensor kinase compare
Atu0777 -2.3 -1.0 hypothetical protein compare
Atu1354 -2.3 -1.4 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2800 -2.3 -3.4 precorrin-3B C17-methyltransferase compare
Atu2052 -2.3 -7.0 hypothetical protein compare
Atu3754 -2.3 -4.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1140 -2.2 -2.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2207 -2.2 -4.5 two component sensor kinase compare
Atu1546 -2.2 -4.6 transcriptional regulator, MerR family compare
Atu2709 -2.2 -12.7 3-isopropylmalate dehydratase, large subunit compare
Atu1644 -2.1 -2.8 hypothetical protein compare
Atu2376 -2.1 -3.1 hypothetical protein compare
Atu1141 -2.1 -4.8 Phosphoribosylglycinamide synthetase compare
Atu2649 -2.1 -3.6 hypothetical protein compare
Atu4610 -2.0 -8.3 sugar nucleotide epimerase/dehydratase compare
Atu0354 -2.0 -1.8 ferric uptake regulator compare
Atu0895 -2.0 -3.1 ABC transporter, substrate binding protein compare
Atu3311 -2.0 -11.7 phosphomannose isomerase compare
Atu1103 -2.0 -2.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1836 -2.0 -1.9 hypothetical protein compare
Atu0086 -2.0 -1.1 ribosome-binding factor A compare
Atu4346 -2.0 -5.4 hypothetical protein compare
Atu0099 -2.0 -5.4 prephenate dehydratase compare
Atu1705 -1.9 -2.8 SEC-independent protein translocase protein compare
Atu1845 -1.9 -3.2 phosphoribosylformylglycinamidine synthase I compare
Atu6189 -1.9 -1.5 protein secretion chaperone compare
Atu0399 -1.9 -4.8 dihydroorotase compare
Atu2439 -1.9 -1.4 hypothetical protein compare
Atu1844 -1.9 -3.2 Phosphoribosylformylglycinamidine synthetase compare
Atu0400 -1.9 -4.5 orotate phosphoribosyltransferase compare
Atu1891 -1.8 -2.8 cobalamin biosynthesis protein compare
Atu2379 -1.8 -8.1 phosphomannomutase compare
Atu1535 -1.8 -4.2 cytochrome c oxidase, FixQ chain compare
Atu2684 -1.8 -1.8 hypothetical protein compare
Atu4616 -1.8 -1.4 dTDP-4-dehydrorhamnose reductase compare
Atu1470 -1.8 -1.0 Camphor resistance protein compare
Atu3739 -1.8 -2.0 phosphoglycerate kinase compare
Atu0769 -1.8 -1.8 protoheme IX farnesyltransferase compare
Atu3707 -1.8 -2.5 phosphoserine aminotransferase compare
Atu2001 -1.8 -6.4 excinuclease ABC subunit B compare
Atu1683 -1.8 -2.2 hypothetical protein compare
Atu0979 -1.7 -6.5 two component sensor kinase compare
Atu2799 -1.7 -3.2 precorrin-6x reductase compare
Atu1327 -1.7 -2.6 NADH-ubiquinone oxidoreductase compare
Atu8167 -1.7 -7.9 putative transmembrane protein compare
Atu0188 -1.7 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu0029 -1.6 -5.1 S-adenosylhomocysteine hydrolase compare
Atu2555 -1.6 -3.6 L-lysine 2,3-aminomutase compare
Atu3353 -1.6 -8.4 mannose-1-phosphate guanylyltransferase compare
Atu0647 -1.6 -4.5 phosphoribosylamine--glycine ligase compare
Atu1075 -1.6 -5.6 amidophosphoribosyltransferase compare
Atu0331 -1.6 -1.6 sigma-54 modulation protein compare
Atu4217 -1.6 -1.2 TetR family transcriptional regulator compare
Atu1021 -1.6 -1.7 outer membrane protein compare
Atu3299 -1.6 -2.2 hypothetical protein compare
Atu5125 -1.6 -5.0 GntR family transcriptional regulator compare
Atu1646 -1.6 -5.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0340 -1.6 -1.7 SAM dependent methyltransferase compare
Atu0141 -1.5 -1.5 cytochrome O ubiquinol oxidase subunit I compare
Atu2620 -1.5 -1.1 hypothetical protein compare
Atu2662 -1.5 -1.4 acetyltransferase compare
Atu2478 -1.5 -3.1 hypothetical protein compare
Atu0876 -1.5 -1.4 superoxide dismutase compare
Atu3009 -1.5 -0.9 exopolysaccharide production protein compare
Atu2692 -1.5 -4.1 intracellular septation protein compare
Atu2590 -1.5 -5.5 hypothetical protein compare
Atu2718 -1.5 -5.2 homoserine O-succinyltransferase compare
Atu4407 -1.5 -1.9 periplasmic nitrate reductase, NapD protein compare
Atu8138 -1.4 -1.5 hypothetical protein compare
Atu4055 -1.4 -4.1 endo-1,3-1,4-beta-glycanase compare
Atu2650 -1.4 -5.4 glycerol-3-phosphate dehydrogenase compare
Atu1308 -1.4 -3.5 aspartate carbamoyl transferase catalytic subunit compare
Atu1447 -1.4 -1.6 two component sensor kinase compare
Atu1686 -1.4 -7.9 peptidyl-prolyl cis-trans isomerse D compare
Atu3219 -1.4 -6.9 dihydroxy-acid dehydratase compare
Atu1364 -1.4 -4.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0499 -1.4 -5.7 hypothetical protein compare
Atu0291 -1.4 -5.5 hypothetical protein compare
Atu6131 -1.4 -2.9 TraR Antiactivator compare
Atu0422 -1.3 -1.8 ABC transporter, membrane spanning protein compare
Atu3579 -1.3 -2.8 lactoylglutathione lyase compare
Atu0205 -1.3 -6.4 methylmalonate-semialdehyde dehydrogenase compare
Atu1780 -1.3 -6.2 ATP-dependent DNA helicase compare
Atu0298 -1.3 -4.3 orotidine 5 compare
Atu2183 -1.3 -4.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1850 -1.3 -2.3 phosphoribosylformylglycinamidine synthetase II compare
Atu0985 -1.3 -5.9 permease compare
Atu1456 -1.3 -6.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0026 -1.3 -0.8 hypothetical protein compare
Atu3469 -1.3 -2.8 phosphoglyceromutase compare
Atu4072 -1.3 -1.2 nodulation protein N compare
Atu4641 -1.3 -2.3 LysR family transcriptional regulator compare
Atu0432 -1.3 -4.0 O-succinylhomoserine sulfhydrylase compare
Atu6021 -1.3 -7.4 D-nopaline dehydrogenase compare
Atu0978 -1.3 -5.2 two component response regulator compare
Atu1838 -1.3 -2.9 ABC transporter, substrate binding protein (amino acid) compare
Atu4711 -1.2 -4.3 two component sensor kinase compare
Atu2487 -1.2 -4.1 pyridoxamine kinase compare
Atu4618 -1.2 -5.5 dTDP-rhamnose-3,5-epimerase compare
Atu3604 -1.2 -2.7 hypoxanthine phosphoribosyltransferase compare
Atu2592 -1.2 -4.3 hypothetical protein compare
Atu0533 -1.2 -1.7 putative inhibitor of septum formation compare
Atu1722 -1.2 -2.4 hypothetical protein compare
Atu4040 -1.2 -2.0 hypothetical protein compare
Atu0801 -1.2 -6.3 chromosome segregation protein compare
Atu2267 -1.2 -3.9 hypothetical protein compare
Atu1904 -1.2 -1.8 transcriptional regulator compare
Atu2304 -1.1 -5.6 bacteroid development protein compare
Atu2790 -1.1 -0.6 3-isopropylmalate dehydratase, small subunit compare
Atu0815 -1.1 -2.9 hypothetical protein compare
Atu3971 -1.1 -6.2 dihydroxy-acid dehydratase compare
Atu3688 -1.1 -1.8 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu4613 -1.1 -6.6 glycosyltransferase compare
Atu0638 -1.1 -1.3 hypothetical protein compare
Atu1422 -1.1 -4.7 transcriptional regulator, MarR family compare
Atu2730 -1.1 -7.1 beta (1-->2) glucan biosynthesis protein compare
Atu2554 -1.1 -1.6 lysyl-tRNA synthetase compare
Atu6020 -1.1 -2.9 conserved hypothetical protein compare
Atu0421 -1.1 -1.0 ABC transporter, membrane spanning protein compare
Atu1285 -1.1 -5.0 metal dependent hydrolase compare
Atu0923 -1.1 -4.8 hypothetical protein compare
Atu1464 -1.1 -3.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu3110 -1.1 -2.7 hypothetical protein compare
Atu0660 -1.1 -3.9 hydrolase compare
Atu4614 -1.1 -5.5 glycosyltransferase compare
Atu2125 -1.1 -0.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu0784 -1.1 -2.5 hypothetical protein compare
Atu3740 -1.1 -4.1 fructose bisphosphate aldolase compare
Atu1647 -1.0 -3.5 ABC transporter, membrane spanning protein compare
Atu0142 -1.0 -1.5 cytochrome o ubiquinol oxidase subunit II compare
Atu6019 -1.0 -7.3 D-nopaline dehydrogenase compare
Atu0486 -1.0 -2.1 dihydroorotate dehydrogenase compare
Atu4148 -1.0 -3.1 UDP-glucuronic acid epimerase compare
Atu0401 -1.0 -1.8 fructokinase compare
Atu1708 -1.0 -4.9 hypothetical protein compare
Atu1023 -1.0 -1.3 hypothetical protein compare
Atu1490 -1.0 -1.3 arsenate reductase compare
Atu0435 -1.0 -1.4 tRNA-Gly compare
Atu3608 -1.0 -2.6 hypothetical protein compare
Atu3279 -1.0 -3.6 methanesulfonate sulfonatase compare
Atu4541 -1.0 -2.7 carboxymuconolactone decarboxylase compare
Atu0184 -1.0 -2.3 glucokinase compare
Atu0237 -1.0 -2.1 hypothetical protein compare
Atu1307 -1.0 -2.7 dihydroorotase compare
Atu0981 -1.0 -5.8 glutamate-ammonia-ligase adenylyltransferase compare
Atu1225 -1.0 -1.2 hypothetical protein compare
Atu3609 -1.0 -3.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu3663 -1.0 -0.6 hypothetical protein compare
Atu1219 -1.0 -0.6 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms