Experiment set6IT034 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu0030 -5.0 -1.6 phosphocarrier protein HPr compare
Atu0043 -4.7 -3.2 imidazoleglycerol-phosphate dehydratase compare
Atu1874 -4.6 -3.2 RecA protein compare
Atu3908 -4.6 -12.9 GntR family transcriptional regulator compare
Atu2036 -4.2 -13.5 acetolactate synthase III, large subunit compare
Atu0017 -3.8 -3.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0769 -3.7 -2.4 protoheme IX farnesyltransferase compare
Atu1750 -3.6 -5.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu1588 -3.5 -9.9 homoserine dehydrogenase compare
Atu0679 -3.4 -5.5 ATP phosphoribosyltransferase compare
Atu2289 -3.3 -15.2 anthranilate synthase component I and II compare
Atu2728 -3.3 -2.2 beta (1-->2) glucan export ATP-binding protein compare
Atu4317 -3.2 -3.5 TetR family transcriptional regulator compare
Atu2057 -3.2 -3.7 DNA helicase II compare
Atu3707 -3.1 -3.1 phosphoserine aminotransferase compare
Atu1417 -3.1 -8.3 enoyl-CoA hydratase compare
Atu3912 -3.1 -7.8 hypothetical protein compare
Atu3706 -3.0 -9.1 D-3-phosphoglycerate dehydrogenase compare
Atu1688 -3.0 -8.4 indole-3-glycerol-phosphate synthase compare
Atu4072 -3.0 -2.1 nodulation protein N compare
Atu0039 -2.9 -2.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1030 -2.8 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4166 -2.8 -1.8 UDP-glucose 4-epimerase compare
Atu6189 -2.8 -1.6 protein secretion chaperone compare
Atu1687 -2.8 -9.3 anthranilate phosphoribosyltransferase compare
Atu0331 -2.7 -2.1 sigma-54 modulation protein compare
Atu0641 -2.7 -3.3 hypothetical protein compare
Atu0537 -2.7 -7.4 histidinol dehydrogenase compare
Atu0041 -2.7 -1.9 glutamine amidotransferase compare
Atu3299 -2.5 -1.9 hypothetical protein compare
Atu0678 -2.4 -6.4 histidyl-tRNA synthetase compare
Atu8096 -2.4 -1.5 hypothetical protein compare
Atu0971 -2.4 -4.2 two component sensor kinase compare
Atu1535 -2.4 -4.7 cytochrome c oxidase, FixQ chain compare
Atu1140 -2.4 -3.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0399 -2.3 -6.8 dihydroorotase compare
Atu0977 -2.3 -5.3 serine protease DO-like protease compare
Atu1205 -2.2 -11.2 threonine dehydratase compare
Atu0777 -2.2 -1.0 hypothetical protein compare
Atu4407 -2.2 -3.4 periplasmic nitrate reductase, NapD protein compare
Atu0101 -2.2 -2.0 cytochrome c compare
Atu3739 -2.2 -2.4 phosphoglycerate kinase compare
Atu0038 -2.1 -4.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2379 -2.1 -7.6 phosphomannomutase compare
Atu1844 -2.1 -3.1 Phosphoribosylformylglycinamidine synthetase compare
Atu3910 -2.1 -3.5 LamB/YcsF family protein compare
Atu0093 -2.0 -4.5 Recombination protein compare
Atu2040 -2.0 -5.6 phosphoserine phosphatase compare
Atu4346 -2.0 -5.6 hypothetical protein compare
Atu3730 -2.0 -1.4 hypothetical protein compare
Atu1308 -2.0 -3.9 aspartate carbamoyl transferase catalytic subunit compare
Atu1513 -2.0 -5.9 ABC excinuclease subunit A compare
Atu1141 -2.0 -5.2 Phosphoribosylglycinamide synthetase compare
Atu1602 -2.0 -6.3 transcriptional activator, Crp family compare
Atu0086 -2.0 -1.1 ribosome-binding factor A compare
Atu0269 -1.9 -4.4 exodeoxyribonuclease VII large subunit compare
Atu0400 -1.9 -4.0 orotate phosphoribosyltransferase compare
Atu1537 -1.9 -6.8 cytochrome-c oxidase, FixN chain compare
Atu0647 -1.9 -6.7 phosphoribosylamine--glycine ligase compare
Atu2522 -1.9 -8.3 agrobacterium chromosomal virulence protein B compare
Atu4773 -1.9 -1.6 two component response regulator compare
Atu2648 -1.8 -3.8 hypothetical protein compare
Atu1810 -1.8 -1.1 hypothetical protein compare
Atu1129 -1.8 -7.1 excinuclease ABC chain C compare
Atu3885 -1.8 -6.6 inositol monophosphatase compare
Atu1359 -1.8 -0.8 dnaK deletion suppressor protein compare
Atu8025 -1.8 -1.4 hypothetical protein compare
Atu0073 -1.8 -5.6 recF-like protein compare
Atu2238 -1.8 -5.3 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0031 -1.8 -1.2 PTS system, IIA component compare
Atu0153 -1.8 -3.8 transcriptional regulator, Fur family compare
Atu0163 -1.8 -5.2 tonB protein compare
Atu8167 -1.8 -8.5 putative transmembrane protein compare
Atu2620 -1.8 -1.2 hypothetical protein compare
Atu1530 -1.7 -6.3 nitrogen fixation protein FixG compare
Atu4711 -1.7 -6.3 two component sensor kinase compare
Atu1904 -1.7 -2.4 transcriptional regulator compare
Atu2052 -1.7 -5.7 hypothetical protein compare
Atu1470 -1.7 -1.0 Camphor resistance protein compare
Atu0298 -1.7 -6.8 orotidine 5 compare
Atu5451 -1.7 -1.5 hypothetical protein compare
Atu3913 -1.7 -4.4 biotin carboxylase compare
Atu4610 -1.7 -6.8 sugar nucleotide epimerase/dehydratase compare
Atu1850 -1.6 -3.0 phosphoribosylformylglycinamidine synthetase II compare
Atu2239 -1.6 -2.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2083 -1.6 -3.9 DNA repair protein RecN compare
Atu3755 -1.6 -3.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1077 -1.6 -3.6 DNA repair protein compare
Atu0161 -1.6 -6.7 biopolymer transport protein compare
Atu3757 -1.6 -2.1 hypothetical protein compare
Atu3311 -1.6 -8.7 phosphomannose isomerase compare
Atu1219 -1.6 -1.0 hypothetical protein compare
Atu0580 -1.6 -1.8 flagellar biosynthetic protein compare
Atu2376 -1.6 -1.6 hypothetical protein compare
Atu1646 -1.6 -4.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu1364 -1.5 -4.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1447 -1.5 -2.1 two component sensor kinase compare
Atu2684 -1.5 -1.7 hypothetical protein compare
Atu2264 -1.5 -7.9 2-isopropylmalate synthase compare
Atu1163 -1.5 -1.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu5115 -1.5 -1.7 hypothetical protein compare
Atu0846 -1.5 -3.7 transcriptional regulator, MarR family compare
Atu2791 -1.5 -3.8 3-isopropylmalate dehydrogenase compare
Atu1536 -1.5 -4.1 cytochrome C oxidase, FixO chain compare
Atu3754 -1.5 -4.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1422 -1.5 -5.6 transcriptional regulator, MarR family compare
Atu6131 -1.5 -4.5 TraR Antiactivator compare
Atu1074 -1.5 -5.4 NAD/NADP dependent oxidoreductase compare
Atu2554 -1.5 -2.1 lysyl-tRNA synthetase compare
Atu2640 -1.4 -3.5 hypothetical protein compare
Atu1173 -1.4 -6.2 MFS permease compare
Atu1075 -1.4 -4.9 amidophosphoribosyltransferase compare
Atu5540 -1.4 -0.9 hypothetical protein compare
Atu0973 -1.4 -6.0 cycH protein compare
Atu1642 -1.4 -1.7 hypothetical protein compare
Atu3744 -1.4 -8.3 ABC transporter permease compare
Atu2590 -1.4 -4.7 hypothetical protein compare
Atu1039 -1.4 -3.6 DNA repair protein RecO compare
Atu3353 -1.4 -7.2 mannose-1-phosphate guanylyltransferase compare
Atu2207 -1.4 -3.0 two component sensor kinase compare
Atu4040 -1.4 -2.3 hypothetical protein compare
Atu3688 -1.3 -2.5 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu2125 -1.3 -1.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu2592 -1.3 -3.5 hypothetical protein compare
Atu1534 -1.3 -5.1 cytochrome-c oxidase, FixP chain compare
Atu1307 -1.3 -3.2 dihydroorotase compare
Atu2183 -1.3 -4.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2439 -1.3 -1.1 hypothetical protein compare
Atu3692 -1.3 -4.2 sigma factor compare
Atu0040 -1.3 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4616 -1.3 -1.7 dTDP-4-dehydrorhamnose reductase compare
Atu2017 -1.3 -1.0 hypothetical protein compare
Atu2709 -1.3 -8.3 3-isopropylmalate dehydratase, large subunit compare
Atu1705 -1.3 -3.0 SEC-independent protein translocase protein compare
Atu2237 -1.3 -3.7 cytochrome c1 compare
Atu1213 -1.3 -1.8 hypothetical protein compare
Atu1845 -1.3 -2.9 phosphoribosylformylglycinamidine synthase I compare
Atu0912 -1.2 -0.9 Na+/H+ antiporter compare
Atu1644 -1.2 -2.7 hypothetical protein compare
Atu0544 -1.2 -1.3 hypothetical protein compare
Atu2740 -1.2 -2.1 transcriptional regulator, GntR family compare
Atu1528 -1.2 -7.5 nitrogen fixation protein FixI compare
Atu2267 -1.2 -4.9 hypothetical protein compare
Atu1529 -1.2 -4.8 nitrogen fixation protein FixH compare
Atu0435 -1.2 -1.6 tRNA-Gly compare
Atu2650 -1.2 -4.0 glycerol-3-phosphate dehydrogenase compare
Atu1103 -1.2 -1.7 rRNA-adenine N6,N6-dimethyltransferase compare
Atu4614 -1.2 -5.8 glycosyltransferase compare
Atu4615 -1.2 -6.4 glucose-1-phosphate thymidylyltransferase compare
Atu0205 -1.2 -6.5 methylmalonate-semialdehyde dehydrogenase compare
Atu1780 -1.1 -5.5 ATP-dependent DNA helicase compare
Atu4618 -1.1 -5.2 dTDP-rhamnose-3,5-epimerase compare
Atu4613 -1.1 -6.2 glycosyltransferase compare
Atu0135 -1.1 -2.1 uracil phosphoribosyltransferase compare
Atu1639 -1.1 -2.4 hypothetical protein compare
Atu3763 -1.1 -1.2 hypothetical protein compare
Atu8138 -1.1 -1.2 hypothetical protein compare
Atu0486 -1.1 -3.0 dihydroorotate dehydrogenase compare
Atu0099 -1.1 -3.7 prephenate dehydratase compare
Atu3215 -1.1 -3.0 oligopeptide ABC transporter ATPase compare
Atu5142 -1.1 -1.0 hypothetical protein compare
Atu3469 -1.1 -2.3 phosphoglyceromutase compare
Atu0050 -1.1 -3.7 two component response regulator compare
Atu0228 -1.1 -2.6 hypothetical protein compare
Atu0976 -1.1 -2.1 cycL protein compare
Atu1805 -1.1 -2.9 hypothetical protein compare
Atu1634 -1.0 -1.2 hypothetical protein compare
Atu1566 -1.0 -0.8 hypothetical protein compare
Atu4749 -1.0 -2.8 fructose transport system kinase compare
Atu0953 -1.0 -0.7 hypothetical protein compare
Atu8194 -1.0 -1.5 hypothetical protein compare
Atu0184 -1.0 -1.9 glucokinase compare
Atu2001 -1.0 -4.7 excinuclease ABC subunit B compare
Atu2591 -1.0 -3.9 glucosyltransferase compare
Atu2140 -1.0 -2.2 hypothetical protein compare
Atu0029 -1.0 -2.4 S-adenosylhomocysteine hydrolase compare
Atu2692 -1.0 -2.7 intracellular septation protein compare
Atu0572 -1.0 -1.1 hypothetical protein compare
Atu1116 -1.0 -2.0 two component response regulator compare
Atu5160 -1.0 -1.5 transcriptional regulator protein compare
Atu0923 -1.0 -3.6 hypothetical protein compare
Atu5125 -1.0 -2.4 GntR family transcriptional regulator compare
Atu0432 -1.0 -4.0 O-succinylhomoserine sulfhydrylase compare
Atu1327 -1.0 -1.8 NADH-ubiquinone oxidoreductase compare
Atu6021 -1.0 -6.4 D-nopaline dehydrogenase compare
Atu0237 -1.0 -1.9 hypothetical protein compare
Atu4055 -1.0 -3.0 endo-1,3-1,4-beta-glycanase compare
Atu2730 -1.0 -6.5 beta (1-->2) glucan biosynthesis protein compare
Atu4338 -1.0 -2.8 hypothetical protein compare
Atu0784 -1.0 -2.3 hypothetical protein compare
Atu2478 -0.9 -2.6 hypothetical protein compare
Atu0422 -0.9 -1.3 ABC transporter, membrane spanning protein compare
Atu4493 -0.9 -2.6 hypothetical protein compare
Atu2662 -0.9 -0.8 acetyltransferase compare
Atu1527 -0.9 -1.9 nitrogen fixation protein FixS compare
Atu0142 -0.9 -1.3 cytochrome o ubiquinol oxidase subunit II compare
Atu2146 -0.9 -1.7 hypothetical protein compare
Atu8123 -0.9 -2.2 hypothetical protein compare
Atu2235 -0.9 -1.0 hypothetical protein compare
Atu1099 -0.9 -2.2 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms