Experiment set6IT034 for Agrobacterium fabrum C58
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Group: in plantaMedia: + Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Culturing: Agro_ML11, at 30 (C)
By: Mitchell Thompson on 12/1/21
Specific Phenotypes
For 6 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Terminal cytochrome C oxidases | 2 |
| Biogenesis of c-type cytochromes | 1 |
| Biogenesis of cbb3-type cytochrome c oxidases | 1 |
| Copper homeostasis | 1 |
| DNA repair, bacterial RecFOR pathway | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Oxidative phosphorylation
- Urea cycle and metabolism of amino groups
- Arginine and proline metabolism
- Atrazine degradation
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| urea degradation I | 3 | 3 | 2 |
| arsenite to oxygen electron transfer | 2 | 1 | 1 |
| cyanuric acid degradation II | 5 | 3 | 2 |
| cyanuric acid degradation I | 5 | 2 | 2 |
| L-citrulline degradation | 3 | 3 | 1 |
| cyanate degradation | 3 | 2 | 1 |
| superpathway of allantoin degradation in yeast | 6 | 3 | 2 |
| arsenite to oxygen electron transfer (via azurin) | 3 | 1 | 1 |
| aerobic respiration I (cytochrome c) | 4 | 3 | 1 |
| L-arginine degradation V (arginine deiminase pathway) | 4 | 3 | 1 |
| aerobic respiration II (cytochrome c) (yeast) | 4 | 2 | 1 |
| superpathway of atrazine degradation | 8 | 3 | 2 |
| uracil degradation III | 5 | 5 | 1 |
| Fe(II) oxidation | 6 | 2 | 1 |
| allantoin degradation IV (anaerobic) | 9 | 4 | 1 |