Experiment set6IT033 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days

200 most important genes:

  gene name fitness t score description  
Atu0030 -5.0 -1.9 phosphocarrier protein HPr compare
Atu0777 -3.9 -1.4 hypothetical protein compare
Atu1359 -3.5 -1.3 dnaK deletion suppressor protein compare
Atu2125 -3.2 -2.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu2439 -3.2 -1.6 hypothetical protein compare
Atu3908 -3.2 -12.1 GntR family transcriptional regulator compare
Atu0769 -3.0 -2.6 protoheme IX farnesyltransferase compare
Atu1030 -2.9 -1.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2036 -2.8 -12.2 acetolactate synthase III, large subunit compare
Atu3912 -2.6 -8.1 hypothetical protein compare
Atu1810 -2.6 -1.2 hypothetical protein compare
Atu4773 -2.6 -2.3 two component response regulator compare
Atu3299 -2.5 -3.7 hypothetical protein compare
Atu1874 -2.4 -3.9 RecA protein compare
Atu1588 -2.4 -9.4 homoserine dehydrogenase compare
Atu1354 -2.3 -1.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1535 -2.3 -4.3 cytochrome c oxidase, FixQ chain compare
Atu0269 -2.1 -5.1 exodeoxyribonuclease VII large subunit compare
Atu0641 -2.1 -3.7 hypothetical protein compare
Atu1537 -2.0 -8.9 cytochrome-c oxidase, FixN chain compare
Atu4407 -2.0 -3.1 periplasmic nitrate reductase, NapD protein compare
Atu0400 -1.9 -4.7 orotate phosphoribosyltransferase compare
Atu8167 -1.9 -9.8 putative transmembrane protein compare
Atu0039 -1.9 -2.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu0399 -1.9 -7.1 dihydroorotase compare
Atu0971 -1.9 -3.9 two component sensor kinase compare
Atu3913 -1.9 -6.2 biotin carboxylase compare
Atu3910 -1.9 -5.1 LamB/YcsF family protein compare
Atu2728 -1.9 -3.5 beta (1-->2) glucan export ATP-binding protein compare
Atu1513 -1.8 -6.0 ABC excinuclease subunit A compare
Atu8138 -1.8 -2.0 hypothetical protein compare
Atu1129 -1.7 -7.6 excinuclease ABC chain C compare
Atu0486 -1.7 -5.6 dihydroorotate dehydrogenase compare
Atu1530 -1.7 -7.6 nitrogen fixation protein FixG compare
Atu0093 -1.7 -5.0 Recombination protein compare
Atu1687 -1.7 -8.9 anthranilate phosphoribosyltransferase compare
Atu1536 -1.6 -5.0 cytochrome C oxidase, FixO chain compare
Atu3468 -1.6 -1.0 hypothetical protein compare
Atu2238 -1.6 -5.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2648 -1.6 -3.8 hypothetical protein compare
Atu3763 -1.6 -1.6 hypothetical protein compare
Atu1602 -1.5 -4.1 transcriptional activator, Crp family compare
Atu6098 -1.5 -0.8 transcriptional regulator, HTH family compare
Atu1417 -1.5 -6.0 enoyl-CoA hydratase compare
Atu2800 -1.5 -2.0 precorrin-3B C17-methyltransferase compare
Atu0331 -1.5 -2.5 sigma-54 modulation protein compare
Atu1534 -1.5 -5.0 cytochrome-c oxidase, FixP chain compare
Atu4346 -1.5 -4.2 hypothetical protein compare
Atu0421 -1.5 -1.5 ABC transporter, membrane spanning protein compare
Atu1173 -1.4 -7.7 MFS permease compare
Atu0784 -1.4 -2.9 hypothetical protein compare
Atu4166 -1.4 -1.9 UDP-glucose 4-epimerase compare
Atu3469 -1.4 -3.3 phosphoglyceromutase compare
Atu2379 -1.4 -6.4 phosphomannomutase compare
Atu1077 -1.4 -3.2 DNA repair protein compare
Atu1904 -1.4 -2.9 transcriptional regulator compare
Atu1074 -1.4 -6.2 NAD/NADP dependent oxidoreductase compare
Atu1528 -1.4 -8.9 nitrogen fixation protein FixI compare
Atu2289 -1.4 -8.6 anthranilate synthase component I and II compare
Atu3311 -1.4 -8.8 phosphomannose isomerase compare
Atu2376 -1.4 -1.6 hypothetical protein compare
Atu2207 -1.3 -3.6 two component sensor kinase compare
Atu4540 -1.3 -2.6 protocatechuate 3,4-dioxygenase subunit beta compare
Atu2554 -1.3 -1.7 lysyl-tRNA synthetase compare
Atu4317 -1.3 -3.4 TetR family transcriptional regulator compare
Atu3739 -1.3 -2.4 phosphoglycerate kinase compare
Atu4616 -1.3 -1.6 dTDP-4-dehydrorhamnose reductase compare
Atu4133 -1.3 -2.4 hypothetical protein compare
Atu2650 -1.3 -5.9 glycerol-3-phosphate dehydrogenase compare
Atu1705 -1.3 -3.0 SEC-independent protein translocase protein compare
Atu0678 -1.3 -3.8 histidyl-tRNA synthetase compare
Atu0544 -1.3 -2.1 hypothetical protein compare
Atu1527 -1.3 -2.5 nitrogen fixation protein FixS compare
Atu0086 -1.2 -1.1 ribosome-binding factor A compare
Atu0973 -1.2 -5.0 cycH protein compare
Atu1470 -1.2 -0.9 Camphor resistance protein compare
Atu2083 -1.2 -3.2 DNA repair protein RecN compare
Atu0237 -1.2 -3.0 hypothetical protein compare
Atu0298 -1.2 -5.4 orotidine 5 compare
Atu0142 -1.2 -1.4 cytochrome o ubiquinol oxidase subunit II compare
Atu1529 -1.2 -3.8 nitrogen fixation protein FixH compare
Atu5451 -1.2 -1.3 hypothetical protein compare
Atu0043 -1.2 -2.0 imidazoleglycerol-phosphate dehydratase compare
Atu0434 -1.2 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1439 -1.2 -1.6 hypothetical protein compare
Atu3707 -1.2 -2.4 phosphoserine aminotransferase compare
Atu6131 -1.1 -3.4 TraR Antiactivator compare
Atu5430 -1.1 -1.5 hypothetical protein compare
Atu0905 -1.1 -4.0 dnaK suppressor protein compare
Atu2183 -1.1 -3.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0038 -1.1 -2.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1422 -1.1 -5.6 transcriptional regulator, MarR family compare
Atu2684 -1.1 -1.7 hypothetical protein compare
Atu1364 -1.1 -4.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1688 -1.1 -3.8 indole-3-glycerol-phosphate synthase compare
Atu2237 -1.1 -3.9 cytochrome c1 compare
Atu0499 -1.1 -4.8 hypothetical protein compare
Atu4610 -1.1 -5.7 sugar nucleotide epimerase/dehydratase compare
Atu2052 -1.1 -3.2 hypothetical protein compare
Atu3754 -1.1 -3.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3757 -1.1 -1.1 hypothetical protein compare
Atu4614 -1.1 -5.2 glycosyltransferase compare
Atu1039 -1.1 -2.2 DNA repair protein RecO compare
Atu5160 -1.0 -2.8 transcriptional regulator protein compare
Atu2057 -1.0 -1.8 DNA helicase II compare
Atu6189 -1.0 -1.4 protein secretion chaperone compare
Atu3353 -1.0 -5.2 mannose-1-phosphate guanylyltransferase compare
Atu0977 -1.0 -3.5 serine protease DO-like protease compare
Atu0050 -1.0 -2.9 two component response regulator compare
Atu1203 -1.0 -2.6 hypothetical protein compare
Atu6045 -1.0 -1.5 replication protein C compare
Atu0923 -1.0 -3.4 hypothetical protein compare
Atu1163 -1.0 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1308 -1.0 -2.2 aspartate carbamoyl transferase catalytic subunit compare
Atu1447 -1.0 -2.0 two component sensor kinase compare
Atu2555 -1.0 -1.8 L-lysine 2,3-aminomutase compare
Atu2239 -1.0 -2.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2592 -1.0 -3.6 hypothetical protein compare
Atu2001 -1.0 -5.1 excinuclease ABC subunit B compare
Atu1601 -1.0 -5.4 oxygen-independent coproporphyrinogen III oxidase compare
Atu1683 -1.0 -1.8 hypothetical protein compare
Atu1780 -1.0 -5.0 ATP-dependent DNA helicase compare
Atu2464 -1.0 -2.0 formyltetrahydrofolate deformylase compare
Atu2163 -1.0 -1.0 hypothetical protein compare
Atu4618 -1.0 -5.2 dTDP-rhamnose-3,5-epimerase compare
Atu2120 -1.0 -2.8 O-methyltransferase compare
Atu2798 -0.9 -2.6 precorrin-6y methyltransferase compare
Atu3744 -0.9 -5.7 ABC transporter permease compare
Atu2522 -0.9 -5.6 agrobacterium chromosomal virulence protein B compare
Atu4617 -0.9 -5.1 dTDP-D-glucose-4,6-dehydratase compare
Atu2590 -0.9 -4.4 hypothetical protein compare
Atu1714 -0.9 -1.2 exonuclease III compare
Atu8052 -0.9 -1.4 hypothetical protein compare
Atu4055 -0.9 -3.5 endo-1,3-1,4-beta-glycanase compare
Atu4072 -0.9 -1.3 nodulation protein N compare
Atu1225 -0.9 -1.1 hypothetical protein compare
Atu2450 -0.9 -1.8 hypothetical protein compare
Atu1803 -0.9 -3.2 cold shock protein compare
Atu5164 -0.9 -0.8 type IV secretion protein AvhB3 compare
Atu2824 -0.9 -3.4 hypothetical protein compare
Atu0580 -0.9 -1.6 flagellar biosynthetic protein compare
Atu0422 -0.9 -1.3 ABC transporter, membrane spanning protein compare
Atu1307 -0.9 -1.8 dihydroorotase compare
Atu2796 -0.9 -2.4 precorrin-4 C11-methyltransferase compare
Atu1141 -0.9 -3.5 Phosphoribosylglycinamide synthetase compare
Atu0188 -0.9 -1.5 ABC transporter, membrane spanning protein (peptide) compare
Atu3413 -0.9 -1.9 AsnC family transcriptional regulator compare
Atu0895 -0.9 -1.9 ABC transporter, substrate binding protein compare
Atu2040 -0.9 -3.3 phosphoserine phosphatase compare
Atu1076 -0.9 -3.0 colicin V production protein compare
Atu1490 -0.9 -1.4 arsenate reductase compare
Atu0189 -0.9 -1.5 ABC transporter, membrane spanning protein (peptide) compare
Atu2267 -0.9 -3.6 hypothetical protein compare
Atu2044 -0.9 -3.3 HFLC protein compare
Atu0976 -0.8 -1.7 cycL protein compare
Atu4615 -0.8 -5.4 glucose-1-phosphate thymidylyltransferase compare
Atu0051 -0.8 -2.9 two component sensor kinase compare
Atu0101 -0.8 -1.5 cytochrome c compare
Atu3755 -0.8 -2.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu8165 -0.8 -1.7 hypothetical protein compare
Atu3604 -0.8 -1.5 hypoxanthine phosphoribosyltransferase compare
Atu8191 -0.8 -1.2 hypothetical protein compare
Atu1066 -0.8 -2.5 hypothetical protein compare
Atu8096 -0.8 -1.0 hypothetical protein compare
Atu1103 -0.8 -2.2 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0031 -0.8 -0.9 PTS system, IIA component compare
Atu1205 -0.8 -4.2 threonine dehydratase compare
Atu2730 -0.8 -5.7 beta (1-->2) glucan biosynthesis protein compare
Atu0690 -0.8 -1.7 hypothetical protein compare
Atu0073 -0.8 -3.0 recF-like protein compare
Atu0141 -0.8 -1.1 cytochrome O ubiquinol oxidase subunit I compare
Atu0153 -0.8 -2.7 transcriptional regulator, Fur family compare
Atu8025 -0.8 -0.7 hypothetical protein compare
Atu3598 -0.8 -1.2 thiol:disulfide interchange protein compare
Atu1620 -0.8 -4.9 triosephosphate isomerase compare
Atu1099 -0.8 -2.9 hypothetical protein compare
Atu4613 -0.8 -4.8 glycosyltransferase compare
Atu0938 -0.8 -1.7 transcriptional regulator, MerR family compare
Atu1774 -0.8 -3.5 ABC transporter, substrate binding protein (peptide) compare
Atu8117 -0.8 -1.3 hypothetical protein compare
Atu4541 -0.7 -2.0 carboxymuconolactone decarboxylase compare
Atu2640 -0.7 -2.5 hypothetical protein compare
Atu0749 -0.7 -2.0 biotin synthesis BioY protein compare
Atu3719 -0.7 -3.1 MutT/nudix family protein compare
Atu0572 -0.7 -1.0 hypothetical protein compare
Atu8123 -0.7 -2.3 hypothetical protein compare
Atu8041 -0.7 -1.4 hypothetical protein compare
Atu1750 -0.7 -2.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu0771 -0.7 -2.6 cytochrome c oxidase subunit III compare
Atu2017 -0.7 -0.8 hypothetical protein compare
Atu1836 -0.7 -1.4 hypothetical protein compare
Atu0328 -0.7 -3.5 heat-inducible transcription repressor compare
Atu0185 -0.7 -2.4 methylglyoxal synthase compare
Atu0955 -0.7 -2.2 hypothetical protein compare
Atu0040 -0.7 -0.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2073 -0.7 -2.5 membrane protein compare
Atu3249 -0.7 -3.5 septum formation inhibitor compare
Atu2191 -0.7 -1.9 transcriptional regulator, LysR family compare
Atu5125 -0.7 -2.7 GntR family transcriptional regulator compare
Atu1175 -0.7 -0.9 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days across organisms