Experiment set6IT032 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days

200 most important genes:

  gene name fitness t score description  
Atu8096 -5.2 -1.7 hypothetical protein compare
Atu0030 -5.0 -1.6 phosphocarrier protein HPr compare
Atu1359 -3.4 -1.1 dnaK deletion suppressor protein compare
Atu4166 -2.9 -2.1 UDP-glucose 4-epimerase compare
Atu1030 -2.9 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3299 -2.6 -3.3 hypothetical protein compare
Atu0399 -2.6 -7.9 dihydroorotase compare
Atu4616 -2.5 -2.3 dTDP-4-dehydrorhamnose reductase compare
Atu0777 -2.3 -1.0 hypothetical protein compare
Atu2036 -2.3 -11.9 acetolactate synthase III, large subunit compare
Atu3763 -2.2 -2.4 hypothetical protein compare
Atu0040 -2.2 -1.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0580 -2.1 -4.5 flagellar biosynthetic protein compare
Atu1588 -2.0 -7.3 homoserine dehydrogenase compare
Atu3730 -2.0 -1.4 hypothetical protein compare
Atu2057 -2.0 -2.7 DNA helicase II compare
Atu3311 -1.9 -12.0 phosphomannose isomerase compare
Atu3353 -1.9 -10.7 mannose-1-phosphate guanylyltransferase compare
Atu4618 -1.9 -11.1 dTDP-rhamnose-3,5-epimerase compare
Atu3469 -1.9 -3.2 phosphoglyceromutase compare
Atu1535 -1.8 -4.3 cytochrome c oxidase, FixQ chain compare
Atu2728 -1.7 -3.0 beta (1-->2) glucan export ATP-binding protein compare
Atu2379 -1.7 -6.0 phosphomannomutase compare
Atu0039 -1.7 -1.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu1874 -1.7 -2.7 RecA protein compare
Atu0641 -1.7 -3.0 hypothetical protein compare
Atu4407 -1.7 -2.8 periplasmic nitrate reductase, NapD protein compare
Atu0971 -1.6 -3.7 two component sensor kinase compare
Atu1308 -1.6 -3.3 aspartate carbamoyl transferase catalytic subunit compare
Atu8052 -1.6 -1.5 hypothetical protein compare
Atu2083 -1.6 -3.7 DNA repair protein RecN compare
Atu0141 -1.6 -1.7 cytochrome O ubiquinol oxidase subunit I compare
Atu0161 -1.6 -7.5 biopolymer transport protein compare
Atu0486 -1.6 -5.4 dihydroorotate dehydrogenase compare
Atu2662 -1.5 -1.5 acetyltransferase compare
Atu2183 -1.5 -4.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0876 -1.5 -1.7 superoxide dismutase compare
Atu0769 -1.5 -1.6 protoheme IX farnesyltransferase compare
Atu4614 -1.5 -4.7 glycosyltransferase compare
Atu3739 -1.5 -1.7 phosphoglycerate kinase compare
Atu1417 -1.5 -3.9 enoyl-CoA hydratase compare
Atu3908 -1.5 -7.0 GntR family transcriptional regulator compare
Atu0354 -1.5 -2.0 ferric uptake regulator compare
Atu3707 -1.5 -2.6 phosphoserine aminotransferase compare
Atu0163 -1.5 -3.8 tonB protein compare
Atu8167 -1.4 -7.5 putative transmembrane protein compare
Atu1225 -1.4 -1.5 hypothetical protein compare
Atu3663 -1.4 -0.8 hypothetical protein compare
Atu3688 -1.4 -2.9 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu1810 -1.4 -1.1 hypothetical protein compare
Atu1513 -1.4 -4.3 ABC excinuclease subunit A compare
Atu1573 -1.4 -1.2 hypothetical protein compare
Atu0895 -1.4 -2.2 ABC transporter, substrate binding protein compare
Atu2800 -1.3 -1.9 precorrin-3B C17-methyltransferase compare
Atu1844 -1.3 -2.7 Phosphoribosylformylglycinamidine synthetase compare
Atu0977 -1.3 -3.2 serine protease DO-like protease compare
Atu0237 -1.3 -2.7 hypothetical protein compare
Atu0784 -1.3 -2.2 hypothetical protein compare
Atu1307 -1.3 -4.7 dihydroorotase compare
Atu4040 -1.2 -1.8 hypothetical protein compare
Atu4617 -1.2 -5.9 dTDP-D-glucose-4,6-dehydratase compare
Atu0043 -1.2 -1.7 imidazoleglycerol-phosphate dehydratase compare
Atu0331 -1.2 -1.9 sigma-54 modulation protein compare
Atu2633 -1.2 -1.8 RhtB family transporter compare
Atu4773 -1.2 -1.0 two component response regulator compare
Atu1475 -1.2 -1.1 hypothetical protein compare
Atu0101 -1.2 -2.1 cytochrome c compare
Atu0269 -1.2 -3.7 exodeoxyribonuclease VII large subunit compare
Atu1364 -1.2 -4.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1904 -1.2 -2.3 transcriptional regulator compare
Atu0298 -1.2 -3.6 orotidine 5 compare
Atu1952 -1.2 -1.0 hypothetical protein compare
Atu6189 -1.2 -1.0 protein secretion chaperone compare
Atu4615 -1.1 -6.5 glucose-1-phosphate thymidylyltransferase compare
Atu2522 -1.1 -5.8 agrobacterium chromosomal virulence protein B compare
Atu1530 -1.1 -5.0 nitrogen fixation protein FixG compare
Atu2797 -1.1 -2.1 cobalamin biosynthesis protein compare
Atu0938 -1.1 -2.1 transcriptional regulator, MerR family compare
Atu5010 -1.1 -1.8 hypothetical protein compare
Atu2376 -1.1 -1.4 hypothetical protein compare
Atu8023 -1.1 -1.3 hypothetical protein compare
Atu0188 -1.1 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu3608 -1.1 -3.8 hypothetical protein compare
Atu2799 -1.0 -1.9 precorrin-6x reductase compare
Atu1129 -1.0 -4.4 excinuclease ABC chain C compare
Atu4610 -1.0 -5.4 sugar nucleotide epimerase/dehydratase compare
Atu1110 -1.0 -2.1 cytosol aminopeptidase compare
Atu1103 -1.0 -1.6 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2640 -1.0 -3.0 hypothetical protein compare
Atu4613 -1.0 -6.3 glycosyltransferase compare
Atu0422 -1.0 -1.7 ABC transporter, membrane spanning protein compare
Atu2040 -1.0 -2.1 phosphoserine phosphatase compare
Atu4346 -1.0 -3.0 hypothetical protein compare
Atu2684 -1.0 -1.0 hypothetical protein compare
Atu2352 -1.0 -1.5 hypothetical protein compare
Atu5430 -1.0 -1.0 hypothetical protein compare
Atu4338 -1.0 -2.4 hypothetical protein compare
Atu1077 -1.0 -3.1 DNA repair protein compare
Atu0142 -1.0 -1.7 cytochrome o ubiquinol oxidase subunit II compare
Atu0184 -1.0 -2.1 glucokinase compare
Atu3110 -1.0 -2.8 hypothetical protein compare
Atu1023 -1.0 -1.3 hypothetical protein compare
Atu2555 -1.0 -2.6 L-lysine 2,3-aminomutase compare
Atu4217 -1.0 -1.1 TetR family transcriptional regulator compare
Atu8169 -1.0 -3.4 hypothetical protein compare
Atu0976 -1.0 -1.4 cycL protein compare
Atu0638 -0.9 -1.2 hypothetical protein compare
Atu0013 -0.9 -2.5 NAD(P)H-flavin oxidoreductase compare
Atu0544 -0.9 -1.5 hypothetical protein compare
Atu0923 -0.9 -3.7 hypothetical protein compare
Atu0905 -0.9 -2.7 dnaK suppressor protein compare
Atu0105 -0.9 -2.0 hypothetical protein compare
Atu3755 -0.9 -2.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3912 -0.9 -3.7 hypothetical protein compare
Atu4711 -0.9 -3.3 two component sensor kinase compare
Atu1213 -0.9 -1.0 hypothetical protein compare
Atu6131 -0.9 -2.5 TraR Antiactivator compare
Atu0749 -0.9 -2.2 biotin synthesis BioY protein compare
Atu8025 -0.9 -0.6 hypothetical protein compare
Atu2052 -0.9 -4.0 hypothetical protein compare
Atu1354 -0.9 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1260 -0.9 -0.9 hypothetical protein compare
Atu4019 -0.9 -3.9 two component response regulator compare
Atu1422 -0.9 -3.6 transcriptional regulator, MarR family compare
Atu5164 -0.9 -0.7 type IV secretion protein AvhB3 compare
Atu3719 -0.9 -3.6 MutT/nudix family protein compare
Atu1537 -0.9 -3.4 cytochrome-c oxidase, FixN chain compare
Atu1895 -0.9 -2.5 3, 4-dihydroxy-2-butanone 4-phosphate synthase compare
Atu2044 -0.9 -2.7 HFLC protein compare
Atu2120 -0.9 -3.7 O-methyltransferase compare
Atu1074 -0.8 -4.0 NAD/NADP dependent oxidoreductase compare
Atu2650 -0.8 -3.7 glycerol-3-phosphate dehydrogenase compare
Atu0771 -0.8 -2.2 cytochrome c oxidase subunit III compare
Atu3604 -0.8 -1.4 hypoxanthine phosphoribosyltransferase compare
Atu2140 -0.8 -1.9 hypothetical protein compare
Atu2207 -0.8 -2.0 two component sensor kinase compare
Atu0093 -0.8 -2.3 Recombination protein compare
Atu2239 -0.8 -2.1 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1750 -0.8 -3.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu0572 -0.8 -0.9 hypothetical protein compare
Atu2432 -0.8 -1.4 hypothetical protein compare
Atu1805 -0.8 -2.1 hypothetical protein compare
Atu1853 -0.8 -2.0 hypothetical protein compare
Atu0225 -0.8 -0.5 hypothetical protein compare
Atu0448 -0.8 -2.2 hypothetical protein compare
Atu3012 -0.8 -1.0 hypothetical protein compare
Atu1447 -0.8 -1.0 two component sensor kinase compare
Atu0516 -0.8 -2.2 chemotaxis receiver protein compare
Atu6114 -0.8 -0.8 hypothetical protein compare
Atu3706 -0.8 -3.0 D-3-phosphoglycerate dehydrogenase compare
Atu3009 -0.8 -0.4 exopolysaccharide production protein compare
Atu2125 -0.8 -1.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu4541 -0.8 -2.5 carboxymuconolactone decarboxylase compare
Atu1205 -0.8 -4.3 threonine dehydratase compare
Atu0011 -0.8 -2.4 transcriptional regulator compare
Atu6098 -0.8 -0.4 transcriptional regulator, HTH family compare
Atu0499 -0.7 -3.3 hypothetical protein compare
Atu3691 -0.7 -2.8 iron (III) dicitrate ABC transporter ATPase compare
Atu1173 -0.7 -3.9 MFS permease compare
Atu1971 -0.7 -1.1 hypothetical protein compare
Atu3467 -0.7 -1.4 hypothetical protein compare
Atu1470 -0.7 -0.6 Camphor resistance protein compare
Atu4887 -0.7 -2.7 hypothetical protein compare
Atu2634 -0.7 -0.9 hypothetical protein compare
Atu0912 -0.7 -0.7 Na+/H+ antiporter compare
Atu1323 -0.7 -1.8 hypothetical protein compare
Atu0762 -0.7 -1.1 hypothetical protein compare
Atu4029 -0.7 -2.1 gluconolactonase compare
Atu2380 -0.7 -1.3 hypothetical protein compare
Atu8195 -0.7 -1.4 hypothetical protein compare
Atu4540 -0.7 -1.5 protocatechuate 3,4-dioxygenase subunit beta compare
Atu8138 -0.7 -1.0 hypothetical protein compare
Atu2238 -0.7 -3.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1327 -0.7 -1.4 NADH-ubiquinone oxidoreductase compare
Atu3692 -0.7 -1.9 sigma factor compare
Atu3215 -0.7 -2.0 oligopeptide ABC transporter ATPase compare
Atu4427 -0.7 -2.4 replicative DNA helicase compare
Atu0955 -0.7 -1.9 hypothetical protein compare
Atu0073 -0.7 -3.5 recF-like protein compare
Atu1795 -0.7 -2.6 malonate transporter compare
Atu3985 -0.7 -2.9 pyrroline-5-carboxylate reductase compare
Atu0894 -0.7 -1.2 ABC transporter, membrane spanning protein compare
Atu1602 -0.7 -2.8 transcriptional activator, Crp family compare
Atu1546 -0.7 -1.7 transcriptional regulator, MerR family compare
Atu1439 -0.7 -0.8 hypothetical protein compare
Atu1741 -0.7 -1.7 hypothetical protein compare
Atu2824 -0.7 -2.5 hypothetical protein compare
Atu1780 -0.7 -4.0 ATP-dependent DNA helicase compare
Atu1628 -0.7 -1.1 hypothetical protein compare
Atu2184 -0.7 -1.7 transcriptional regulator, AsnC family compare
Atu3014 -0.7 -0.6 hypothetical protein compare
Atu1141 -0.7 -2.3 Phosphoribosylglycinamide synthetase compare
Atu4129 -0.7 -2.3 3-hydroxyisobutyrate dehydrogenase compare
Atu0036 -0.7 -1.2 hypothetical protein compare
Atu8133 -0.7 -1.4 hypothetical protein compare
Atu1683 -0.7 -1.3 hypothetical protein compare
Atu0660 -0.7 -2.4 hydrolase compare
Atu0635 -0.7 -1.7 hypothetical protein compare
Atu0533 -0.7 -0.7 putative inhibitor of septum formation compare
Atu3575 -0.7 -2.3 xylose ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days across organisms