Experiment set6IT028 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days

200 most important genes:

  gene name fitness t score description  
Atu0030 -4.9 -1.6 phosphocarrier protein HPr compare
Atu3763 -3.8 -2.4 hypothetical protein compare
Atu0777 -3.8 -1.2 hypothetical protein compare
Atu1030 -2.9 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3299 -2.8 -1.9 hypothetical protein compare
Atu0641 -2.5 -3.4 hypothetical protein compare
Atu0544 -2.4 -2.6 hypothetical protein compare
Atu6189 -2.4 -1.9 protein secretion chaperone compare
Atu0399 -2.4 -5.4 dihydroorotase compare
Atu1874 -2.3 -3.8 RecA protein compare
Atu1535 -2.3 -3.9 cytochrome c oxidase, FixQ chain compare
Atu1588 -2.3 -8.1 homoserine dehydrogenase compare
Atu1103 -2.3 -3.7 rRNA-adenine N6,N6-dimethyltransferase compare
Atu4166 -2.3 -2.2 UDP-glucose 4-epimerase compare
Atu2800 -2.1 -3.4 precorrin-3B C17-methyltransferase compare
Atu3730 -2.1 -1.5 hypothetical protein compare
Atu2036 -2.0 -10.1 acetolactate synthase III, large subunit compare
Atu1359 -1.9 -0.9 dnaK deletion suppressor protein compare
Atu0331 -1.9 -2.4 sigma-54 modulation protein compare
Atu0237 -1.9 -4.0 hypothetical protein compare
Atu0580 -1.9 -3.9 flagellar biosynthetic protein compare
Atu4407 -1.9 -3.4 periplasmic nitrate reductase, NapD protein compare
Atu1810 -1.9 -1.2 hypothetical protein compare
Atu1447 -1.9 -2.7 two component sensor kinase compare
Atu1354 -1.8 -1.4 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0769 -1.8 -1.9 protoheme IX farnesyltransferase compare
Atu0876 -1.8 -1.7 superoxide dismutase compare
Atu3908 -1.7 -8.5 GntR family transcriptional regulator compare
Atu3999 -1.6 -1.5 dithiobiotin synthetase compare
Atu0041 -1.6 -1.9 glutamine amidotransferase compare
Atu2728 -1.6 -3.5 beta (1-->2) glucan export ATP-binding protein compare
Atu3311 -1.6 -9.5 phosphomannose isomerase compare
Atu0269 -1.6 -4.2 exodeoxyribonuclease VII large subunit compare
Atu2648 -1.6 -3.9 hypothetical protein compare
Atu3469 -1.5 -3.5 phosphoglyceromutase compare
Atu8052 -1.5 -1.6 hypothetical protein compare
Atu0486 -1.5 -5.1 dihydroorotate dehydrogenase compare
Atu0298 -1.5 -5.6 orotidine 5 compare
Atu1513 -1.5 -4.7 ABC excinuclease subunit A compare
Atu0971 -1.5 -3.5 two component sensor kinase compare
Atu4618 -1.5 -6.5 dTDP-rhamnose-3,5-epimerase compare
Atu8096 -1.4 -1.3 hypothetical protein compare
Atu8167 -1.4 -6.9 putative transmembrane protein compare
Atu3688 -1.4 -2.7 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu2376 -1.4 -2.6 hypothetical protein compare
Atu0400 -1.4 -3.6 orotate phosphoribosyltransferase compare
Atu2640 -1.4 -3.0 hypothetical protein compare
Atu1077 -1.4 -3.0 DNA repair protein compare
Atu2052 -1.3 -3.8 hypothetical protein compare
Atu2183 -1.3 -4.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2083 -1.3 -3.0 DNA repair protein RecN compare
Atu4614 -1.3 -5.1 glycosyltransferase compare
Atu4346 -1.3 -4.1 hypothetical protein compare
Atu2057 -1.3 -2.5 DNA helicase II compare
Atu2684 -1.3 -1.6 hypothetical protein compare
Atu1129 -1.3 -5.3 excinuclease ABC chain C compare
Atu2522 -1.3 -6.8 agrobacterium chromosomal virulence protein B compare
Atu2379 -1.2 -5.1 phosphomannomutase compare
Atu1173 -1.2 -6.0 MFS permease compare
Atu0905 -1.2 -2.6 dnaK suppressor protein compare
Atu0976 -1.2 -2.4 cycL protein compare
Atu0784 -1.2 -2.3 hypothetical protein compare
Atu1307 -1.2 -2.6 dihydroorotase compare
Atu6131 -1.1 -3.0 TraR Antiactivator compare
Atu4217 -1.1 -1.2 TetR family transcriptional regulator compare
Atu1602 -1.1 -4.2 transcriptional activator, Crp family compare
Atu2797 -1.1 -3.0 cobalamin biosynthesis protein compare
Atu1417 -1.1 -5.4 enoyl-CoA hydratase compare
Atu0422 -1.1 -1.1 ABC transporter, membrane spanning protein compare
Atu0938 -1.1 -2.2 transcriptional regulator, MerR family compare
Atu2799 -1.1 -3.0 precorrin-6x reductase compare
Atu4040 -1.1 -1.6 hypothetical protein compare
Atu2555 -1.1 -2.6 L-lysine 2,3-aminomutase compare
Atu1530 -1.1 -4.4 nitrogen fixation protein FixG compare
Atu0161 -1.1 -6.3 biopolymer transport protein compare
Atu3353 -1.1 -5.6 mannose-1-phosphate guanylyltransferase compare
Atu0101 -1.1 -1.5 cytochrome c compare
Atu1308 -1.0 -2.4 aspartate carbamoyl transferase catalytic subunit compare
Atu1163 -1.0 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0815 -1.0 -1.6 hypothetical protein compare
Atu3755 -1.0 -3.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0533 -1.0 -1.4 putative inhibitor of septum formation compare
Atu1219 -1.0 -0.6 hypothetical protein compare
Atu1364 -1.0 -3.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4541 -1.0 -2.7 carboxymuconolactone decarboxylase compare
Atu1537 -1.0 -3.9 cytochrome-c oxidase, FixN chain compare
Atu4317 -1.0 -2.2 TetR family transcriptional regulator compare
Atu2238 -1.0 -3.6 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1528 -1.0 -6.1 nitrogen fixation protein FixI compare
Atu0846 -1.0 -2.6 transcriptional regulator, MarR family compare
Atu0894 -1.0 -1.5 ABC transporter, membrane spanning protein compare
Atu1904 -1.0 -1.6 transcriptional regulator compare
Atu1805 -1.0 -2.5 hypothetical protein compare
Atu4055 -1.0 -4.5 endo-1,3-1,4-beta-glycanase compare
Atu1705 -1.0 -2.1 SEC-independent protein translocase protein compare
Atu1536 -1.0 -4.2 cytochrome C oxidase, FixO chain compare
Atu0977 -1.0 -3.1 serine protease DO-like protease compare
Atu1850 -1.0 -2.0 phosphoribosylformylglycinamidine synthetase II compare
Atu0516 -1.0 -2.4 chemotaxis receiver protein compare
Atu1074 -0.9 -3.7 NAD/NADP dependent oxidoreductase compare
Atu0973 -0.9 -4.0 cycH protein compare
Atu8099 -0.9 -1.8 hypothetical protein compare
Atu4615 -0.9 -5.0 glucose-1-phosphate thymidylyltransferase compare
Atu3744 -0.9 -4.5 ABC transporter permease compare
Atu2650 -0.9 -4.6 glycerol-3-phosphate dehydrogenase compare
Atu4610 -0.9 -4.2 sugar nucleotide epimerase/dehydratase compare
Atu1558 -0.9 -1.6 permease compare
Atu0796 -0.9 -2.7 putative peptidase compare
Atu0142 -0.9 -1.7 cytochrome o ubiquinol oxidase subunit II compare
Atu4773 -0.9 -1.0 two component response regulator compare
Atu3719 -0.9 -2.9 MutT/nudix family protein compare
Atu3750 -0.9 -1.4 thiamine-phosphate pyrophosphorylase compare
Atu1260 -0.9 -0.9 hypothetical protein compare
Atu4338 -0.9 -2.1 hypothetical protein compare
Atu3668 -0.9 -1.7 siderophore biosynthesis protein compare
Atu2140 -0.9 -1.8 hypothetical protein compare
Atu3985 -0.9 -3.3 pyrroline-5-carboxylate reductase compare
Atu0647 -0.9 -3.2 phosphoribosylamine--glycine ligase compare
Atu1141 -0.9 -3.3 Phosphoribosylglycinamide synthetase compare
Atu1527 -0.9 -2.0 nitrogen fixation protein FixS compare
Atu2193 -0.9 -0.7 hypothetical protein compare
Atu1203 -0.9 -1.1 hypothetical protein compare
Atu1844 -0.8 -1.2 Phosphoribosylformylglycinamidine synthetase compare
Atu2592 -0.8 -2.6 hypothetical protein compare
Atu0086 -0.8 -0.7 ribosome-binding factor A compare
Atu0188 -0.8 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu1140 -0.8 -2.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0153 -0.8 -3.3 transcriptional regulator, Fur family compare
Atu1534 -0.8 -3.7 cytochrome-c oxidase, FixP chain compare
Atu8138 -0.8 -0.9 hypothetical protein compare
Atu2798 -0.8 -1.8 precorrin-6y methyltransferase compare
Atu1323 -0.8 -1.1 hypothetical protein compare
Atu5427 -0.8 -1.7 hypothetical protein compare
Atu3604 -0.8 -1.0 hypoxanthine phosphoribosyltransferase compare
Atu2120 -0.8 -2.7 O-methyltransferase compare
Atu2831 -0.8 -3.0 glucose inhibited division protein A compare
Atu8117 -0.8 -1.1 hypothetical protein compare
Atu3468 -0.8 -0.5 hypothetical protein compare
Atu1133 -0.8 -2.8 ribonuclease compare
Atu3706 -0.8 -3.1 D-3-phosphoglycerate dehydrogenase compare
Atu4484 -0.8 -1.9 hypothetical protein compare
Atu2617 -0.8 -1.8 chemotaxis protein compare
Atu1099 -0.8 -1.9 hypothetical protein compare
Atu0340 -0.8 -0.9 SAM dependent methyltransferase compare
Atu0413 -0.8 -1.1 stress induced protein compare
Atu2478 -0.8 -1.8 hypothetical protein compare
Atu1188 -0.8 -2.7 hypothetical protein compare
Atu0499 -0.8 -3.8 hypothetical protein compare
Atu2239 -0.8 -1.8 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2237 -0.8 -2.6 cytochrome c1 compare
Atu3249 -0.7 -2.6 septum formation inhibitor compare
Atu3336 -0.7 -1.3 hypothetical protein compare
Atu0690 -0.7 -1.1 hypothetical protein compare
Atu1464 -0.7 -2.3 glycine cleavage system T protein, aminomethyltransferase compare
Atu0934 -0.7 -3.5 hypothetical protein compare
Atu4237 -0.7 -1.7 hypothetical protein compare
Atu0031 -0.7 -0.7 PTS system, IIA component compare
Atu4540 -0.7 -1.1 protocatechuate 3,4-dioxygenase subunit beta compare
Atu4617 -0.7 -4.7 dTDP-D-glucose-4,6-dehydratase compare
Atu2832 -0.7 -2.2 tRNA modification GTPase compare
Atu2491 -0.7 -2.3 hypothetical protein compare
Atu2672 -0.7 -2.0 hypothetical protein compare
Atu3912 -0.7 -2.7 hypothetical protein compare
Atu3757 -0.7 -0.7 hypothetical protein compare
Atu1475 -0.7 -1.1 hypothetical protein compare
Atu3598 -0.7 -0.7 thiol:disulfide interchange protein compare
Atu1853 -0.7 -1.0 hypothetical protein compare
Atu2590 -0.7 -3.4 hypothetical protein compare
Atu8023 -0.7 -0.9 hypothetical protein compare
Atu2824 -0.7 -2.2 hypothetical protein compare
Atu2633 -0.7 -0.7 RhtB family transporter compare
Atu1774 -0.7 -2.3 ABC transporter, substrate binding protein (peptide) compare
Atu1551 -0.7 -2.1 hypothetical protein compare
Atu2045 -0.7 -3.3 HFLK protein compare
Atu0039 -0.7 -0.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu1302 -0.7 -1.5 hypothetical protein compare
Atu3692 -0.7 -1.8 sigma factor compare
Atu1838 -0.7 -1.5 ABC transporter, substrate binding protein (amino acid) compare
Atu1636 -0.7 -2.1 hypothetical protein compare
Atu2439 -0.7 -0.8 hypothetical protein compare
Atu1076 -0.7 -2.3 colicin V production protein compare
Atu1423 -0.7 -2.2 hypothetical protein compare
Atu3898 -0.7 -2.4 DeoR family transcriptional regulator compare
Atu3739 -0.7 -1.0 phosphoglycerate kinase compare
Atu2585 -0.7 -2.1 hypothetical protein compare
Atu3160 -0.7 -1.5 hypothetical protein compare
Atu5493 -0.7 -1.3 hypothetical protein compare
Atu6021 -0.7 -4.4 D-nopaline dehydrogenase compare
Atu1028 -0.7 -1.1 hypothetical protein compare
Atu2073 -0.7 -2.0 membrane protein compare
Atu1336 -0.7 -1.3 hypothetical protein compare
Atu3634 -0.7 -2.3 penicillin-binding protein dacf precursor compare
Atu2270 -0.7 -0.9 ATP-dependent Clp protease, proteolytic subunit compare
Atu1124 -0.7 -1.6 hypothetical protein compare
Atu4129 -0.7 -2.1 3-hydroxyisobutyrate dehydrogenase compare
Atu8123 -0.7 -1.7 hypothetical protein compare
Atu3083 -0.7 -1.8 hypothetical protein compare
Atu1677 -0.7 -1.4 queuine tRNA-ribosyltransferase compare
Atu0572 -0.7 -0.6 hypothetical protein compare
Atu1780 -0.7 -3.7 ATP-dependent DNA helicase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days across organisms