Experiment set6IT026 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days

200 most important genes:

  gene name fitness t score description  
Atu0030 -4.9 -1.5 phosphocarrier protein HPr compare
Atu1874 -4.4 -3.1 RecA protein compare
Atu0777 -3.8 -1.1 hypothetical protein compare
Atu4773 -3.8 -1.5 two component response regulator compare
Atu3299 -3.6 -2.3 hypothetical protein compare
Atu3730 -3.6 -1.8 hypothetical protein compare
Atu0641 -3.2 -3.1 hypothetical protein compare
Atu4407 -3.0 -3.4 periplasmic nitrate reductase, NapD protein compare
Atu1470 -2.7 -1.1 Camphor resistance protein compare
Atu1129 -2.6 -9.3 excinuclease ABC chain C compare
Atu0039 -2.6 -1.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu2648 -2.6 -3.7 hypothetical protein compare
Atu1588 -2.5 -8.1 homoserine dehydrogenase compare
Atu0769 -2.5 -2.2 protoheme IX farnesyltransferase compare
Atu6189 -2.4 -1.6 protein secretion chaperone compare
Atu3604 -2.3 -3.0 hypoxanthine phosphoribosyltransferase compare
Atu2036 -2.2 -10.1 acetolactate synthase III, large subunit compare
Atu1535 -2.2 -3.7 cytochrome c oxidase, FixQ chain compare
Atu8096 -2.2 -1.4 hypothetical protein compare
Atu0093 -2.1 -5.6 Recombination protein compare
Atu1513 -2.1 -5.9 ABC excinuclease subunit A compare
Atu0269 -2.1 -4.6 exodeoxyribonuclease VII large subunit compare
Atu2125 -2.0 -1.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu2800 -2.0 -3.1 precorrin-3B C17-methyltransferase compare
Atu8167 -1.9 -8.1 putative transmembrane protein compare
Atu0141 -1.9 -1.6 cytochrome O ubiquinol oxidase subunit I compare
Atu3121 -1.9 -1.1 cold shock protein compare
Atu1359 -1.9 -0.8 dnaK deletion suppressor protein compare
Atu2728 -1.9 -3.5 beta (1-->2) glucan export ATP-binding protein compare
Atu0580 -1.8 -1.7 flagellar biosynthetic protein compare
Atu1810 -1.8 -1.0 hypothetical protein compare
Atu3912 -1.8 -4.5 hypothetical protein compare
Atu1077 -1.7 -4.3 DNA repair protein compare
Atu4072 -1.7 -1.9 nodulation protein N compare
Atu3688 -1.7 -2.9 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu2057 -1.7 -3.0 DNA helicase II compare
Atu2650 -1.7 -5.7 glycerol-3-phosphate dehydrogenase compare
Atu0533 -1.7 -1.8 putative inhibitor of septum formation compare
Atu2376 -1.7 -2.9 hypothetical protein compare
Atu1836 -1.6 -1.5 hypothetical protein compare
Atu0971 -1.6 -3.4 two component sensor kinase compare
Atu3908 -1.6 -8.1 GntR family transcriptional regulator compare
Atu1103 -1.6 -2.2 rRNA-adenine N6,N6-dimethyltransferase compare
Atu4053 -1.6 -1.2 succinoglycan biosynthesis protein compare
Atu0399 -1.5 -4.8 dihydroorotase compare
Atu0977 -1.5 -3.7 serine protease DO-like protease compare
Atu1475 -1.5 -1.4 hypothetical protein compare
Atu1530 -1.5 -4.5 nitrogen fixation protein FixG compare
Atu3429 -1.5 -0.9 hypothetical protein compare
Atu1308 -1.5 -3.0 aspartate carbamoyl transferase catalytic subunit compare
Atu8169 -1.5 -3.0 hypothetical protein compare
Atu2239 -1.4 -2.4 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0050 -1.4 -3.6 two component response regulator compare
Atu2001 -1.4 -5.4 excinuclease ABC subunit B compare
Atu2238 -1.4 -4.9 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1518 -1.4 -3.2 transcriptional regulator, Fur family compare
Atu2799 -1.3 -2.1 precorrin-6x reductase compare
Atu0905 -1.3 -2.8 dnaK suppressor protein compare
Atu2620 -1.3 -1.0 hypothetical protein compare
Atu1163 -1.3 -1.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1529 -1.3 -3.0 nitrogen fixation protein FixH compare
Atu0237 -1.3 -2.5 hypothetical protein compare
Atu0073 -1.3 -5.4 recF-like protein compare
Atu2722 -1.3 -5.4 porin compare
Atu1537 -1.3 -4.7 cytochrome-c oxidase, FixN chain compare
Atu1687 -1.2 -5.9 anthranilate phosphoribosyltransferase compare
Atu2207 -1.2 -2.7 two component sensor kinase compare
Atu1602 -1.2 -4.8 transcriptional activator, Crp family compare
Atu3910 -1.2 -3.1 LamB/YcsF family protein compare
Atu0690 -1.2 -1.6 hypothetical protein compare
Atu0043 -1.2 -1.7 imidazoleglycerol-phosphate dehydratase compare
Atu3757 -1.2 -1.4 hypothetical protein compare
Atu3913 -1.2 -4.3 biotin carboxylase compare
Atu0544 -1.2 -1.5 hypothetical protein compare
Atu1528 -1.2 -7.2 nitrogen fixation protein FixI compare
Atu3469 -1.2 -2.7 phosphoglyceromutase compare
Atu0189 -1.2 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu4610 -1.2 -4.6 sugar nucleotide epimerase/dehydratase compare
Atu3739 -1.1 -1.2 phosphoglycerate kinase compare
Atu0572 -1.1 -1.1 hypothetical protein compare
Atu1447 -1.1 -1.4 two component sensor kinase compare
Atu0448 -1.1 -1.9 hypothetical protein compare
Atu0400 -1.1 -2.7 orotate phosphoribosyltransferase compare
Atu3311 -1.1 -6.4 phosphomannose isomerase compare
Atu1173 -1.1 -4.8 MFS permease compare
Atu3353 -1.1 -5.7 mannose-1-phosphate guanylyltransferase compare
Atu8052 -1.1 -1.0 hypothetical protein compare
Atu1536 -1.1 -3.6 cytochrome C oxidase, FixO chain compare
Atu0824 -1.1 -0.7 hypothetical protein compare
Atu3999 -1.1 -1.3 dithiobiotin synthetase compare
Atu2484 -1.1 -1.1 hypothetical protein compare
Atu1074 -1.1 -4.8 NAD/NADP dependent oxidoreductase compare
Atu0142 -1.1 -1.2 cytochrome o ubiquinol oxidase subunit II compare
Atu2289 -1.1 -6.1 anthranilate synthase component I and II compare
Atu1844 -1.1 -1.9 Phosphoribosylformylglycinamidine synthetase compare
Atu0846 -1.1 -2.1 transcriptional regulator, MarR family compare
Atu8023 -1.1 -1.3 hypothetical protein compare
Atu3740 -1.1 -4.1 fructose bisphosphate aldolase compare
Atu1904 -1.0 -1.7 transcriptional regulator compare
Atu3744 -1.0 -5.4 ABC transporter permease compare
Atu1527 -1.0 -2.7 nitrogen fixation protein FixS compare
Atu3110 -1.0 -2.4 hypothetical protein compare
Atu0762 -1.0 -1.6 hypothetical protein compare
Atu3750 -1.0 -1.8 thiamine-phosphate pyrophosphorylase compare
Atu8117 -1.0 -1.4 hypothetical protein compare
Atu2590 -1.0 -4.0 hypothetical protein compare
Atu1534 -1.0 -3.8 cytochrome-c oxidase, FixP chain compare
Atu1566 -1.0 -0.9 hypothetical protein compare
Atu1895 -1.0 -2.5 3, 4-dihydroxy-2-butanone 4-phosphate synthase compare
Atu0152 -1.0 -1.2 hypothetical protein compare
Atu2052 -1.0 -3.4 hypothetical protein compare
Atu4148 -1.0 -3.7 UDP-glucuronic acid epimerase compare
Atu8195 -1.0 -1.8 hypothetical protein compare
Atu1679 -1.0 -1.5 peptidyl prolyl cis-trans isomerase compare
Atu3763 -1.0 -1.4 hypothetical protein compare
Atu2592 -1.0 -2.8 hypothetical protein compare
Atu0923 -1.0 -3.4 hypothetical protein compare
Atu5164 -1.0 -0.7 type IV secretion protein AvhB3 compare
Atu4616 -1.0 -1.3 dTDP-4-dehydrorhamnose reductase compare
Atu1039 -1.0 -2.0 DNA repair protein RecO compare
Atu0925 -1.0 -1.5 hypothetical protein compare
Atu2120 -0.9 -2.9 O-methyltransferase compare
Atu1439 -0.9 -1.0 hypothetical protein compare
Atu2379 -0.9 -4.3 phosphomannomutase compare
Atu0976 -0.9 -1.4 cycL protein compare
Atu1780 -0.9 -4.8 ATP-dependent DNA helicase compare
Atu4290 -0.9 -1.6 hypothetical protein compare
Atu8138 -0.9 -0.9 hypothetical protein compare
Atu0486 -0.9 -2.4 dihydroorotate dehydrogenase compare
Atu5160 -0.9 -1.5 transcriptional regulator protein compare
Atu4040 -0.9 -1.2 hypothetical protein compare
Atu2684 -0.9 -1.0 hypothetical protein compare
Atu4614 -0.9 -4.3 glycosyltransferase compare
Atu8088 -0.9 -1.2 hypothetical protein compare
Atu1750 -0.9 -3.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu2083 -0.9 -2.3 DNA repair protein RecN compare
Atu1636 -0.9 -2.3 hypothetical protein compare
Atu1323 -0.9 -1.9 hypothetical protein compare
Atu0101 -0.9 -1.0 cytochrome c compare
Atu8123 -0.9 -1.5 hypothetical protein compare
Atu0188 -0.9 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu1307 -0.9 -2.2 dihydroorotase compare
Atu0298 -0.9 -3.4 orotidine 5 compare
Atu3898 -0.9 -2.6 DeoR family transcriptional regulator compare
Atu5109 -0.9 -1.8 conjugal transfer protein compare
Atu2831 -0.9 -3.0 glucose inhibited division protein A compare
Atu2304 -0.9 -4.8 bacteroid development protein compare
Atu4338 -0.9 -2.3 hypothetical protein compare
Atu0815 -0.9 -1.4 hypothetical protein compare
Atu4618 -0.9 -4.4 dTDP-rhamnose-3,5-epimerase compare
Atu3249 -0.9 -3.0 septum formation inhibitor compare
Atu2662 -0.9 -0.9 acetyltransferase compare
Atu2554 -0.9 -1.2 lysyl-tRNA synthetase compare
Atu2140 -0.9 -1.5 hypothetical protein compare
Atu8041 -0.9 -1.4 hypothetical protein compare
Atu6131 -0.9 -1.5 TraR Antiactivator compare
Atu2515 -0.9 -1.9 ABC transporter, nucleotide binding/ATPase protein (dipeptide) compare
Atu4317 -0.9 -1.5 TetR family transcriptional regulator compare
Atu3548 -0.9 -2.3 glycosyltransferase compare
Atu0638 -0.8 -1.2 hypothetical protein compare
Atu5010 -0.8 -1.1 hypothetical protein compare
Atu1399 -0.8 -2.2 ABC transporter, substrate binding protein (amino acid) compare
Atu5501 -0.8 -1.5 hypothetical protein compare
Atu1853 -0.8 -1.4 hypothetical protein compare
Atu1838 -0.8 -2.3 ABC transporter, substrate binding protein (amino acid) compare
Atu0978 -0.8 -3.5 two component response regulator compare
Atu3215 -0.8 -1.7 oligopeptide ABC transporter ATPase compare
Atu2824 -0.8 -2.9 hypothetical protein compare
Atu4346 -0.8 -2.7 hypothetical protein compare
Atu4171 -0.8 -2.9 cold-shock dead-box protein A compare
Atu2591 -0.8 -3.7 glucosyltransferase compare
Atu1558 -0.8 -1.2 permease compare
Atu0499 -0.8 -3.4 hypothetical protein compare
Atu2183 -0.8 -3.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1023 -0.8 -1.0 hypothetical protein compare
Atu1116 -0.8 -2.0 two component response regulator compare
Atu4791 -0.8 -2.4 hypothetical protein compare
Atu1805 -0.8 -1.7 hypothetical protein compare
Atu0678 -0.8 -2.4 histidyl-tRNA synthetase compare
Atu3346 -0.8 -2.4 succinoglycan biosynthesis regulator compare
Atu0955 -0.8 -1.8 hypothetical protein compare
Atu2617 -0.8 -1.1 chemotaxis protein compare
Atu1007 -0.8 -1.7 hypothetical protein compare
Atu5150 -0.8 -2.9 glutathione S-transferase compare
Atu0966 -0.8 -1.4 hypothetical protein compare
Atu4749 -0.8 -1.8 fructose transport system kinase compare
Atu0784 -0.8 -1.6 hypothetical protein compare
Atu5125 -0.8 -2.5 GntR family transcriptional regulator compare
Atu2626 -0.8 -1.3 hypothetical protein compare
Atu0029 -0.8 -2.3 S-adenosylhomocysteine hydrolase compare
Atu2598 -0.8 -2.9 transcriptional regulator, RpiR family compare
Atu1551 -0.8 -2.5 hypothetical protein compare
Atu5493 -0.8 -1.8 hypothetical protein compare
Atu0973 -0.8 -3.3 cycH protein compare
Atu1066 -0.8 -2.1 hypothetical protein compare
Atu4019 -0.7 -2.4 two component response regulator compare
Atu1546 -0.7 -2.1 transcriptional regulator, MerR family compare
Atu0036 -0.7 -1.2 hypothetical protein compare
Atu1205 -0.7 -3.6 threonine dehydratase compare
Atu2051 -0.7 -1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days across organisms