Experiment set6IT024 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days

200 most important genes:

  gene name fitness t score description  
Atu0030 -4.9 -1.8 phosphocarrier protein HPr compare
Atu3730 -3.6 -2.2 hypothetical protein compare
Atu1447 -3.6 -3.9 two component sensor kinase compare
Atu3763 -2.9 -2.7 hypothetical protein compare
Atu0269 -2.7 -4.9 exodeoxyribonuclease VII large subunit compare
Atu8052 -2.6 -2.2 hypothetical protein compare
Atu2036 -2.5 -11.2 acetolactate synthase III, large subunit compare
Atu0331 -2.4 -3.3 sigma-54 modulation protein compare
Atu2439 -2.4 -1.7 hypothetical protein compare
Atu0399 -2.4 -7.7 dihydroorotase compare
Atu1535 -2.3 -4.2 cytochrome c oxidase, FixQ chain compare
Atu1354 -2.3 -1.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2800 -2.2 -3.8 precorrin-3B C17-methyltransferase compare
Atu0298 -2.2 -7.7 orotidine 5 compare
Atu2662 -2.1 -1.9 acetyltransferase compare
Atu2057 -2.1 -3.1 DNA helicase II compare
Atu1874 -2.0 -3.7 RecA protein compare
Atu0769 -2.0 -1.9 protoheme IX farnesyltransferase compare
Atu8167 -2.0 -9.4 putative transmembrane protein compare
Atu4166 -2.0 -2.4 UDP-glucose 4-epimerase compare
Atu3299 -1.9 -1.4 hypothetical protein compare
Atu0641 -1.9 -3.3 hypothetical protein compare
Atu1359 -1.9 -0.9 dnaK deletion suppressor protein compare
Atu1588 -1.8 -7.7 homoserine dehydrogenase compare
Atu8096 -1.8 -1.6 hypothetical protein compare
Atu2728 -1.8 -3.2 beta (1-->2) glucan export ATP-binding protein compare
Atu3908 -1.8 -9.8 GntR family transcriptional regulator compare
Atu0486 -1.8 -3.2 dihydroorotate dehydrogenase compare
Atu0971 -1.7 -4.0 two component sensor kinase compare
Atu1513 -1.7 -5.7 ABC excinuclease subunit A compare
Atu0723 -1.7 -1.9 FAD dependent oxidoreductase compare
Atu2684 -1.7 -1.8 hypothetical protein compare
Atu3739 -1.7 -2.6 phosphoglycerate kinase compare
Atu3012 -1.6 -1.9 hypothetical protein compare
Atu0580 -1.6 -1.8 flagellar biosynthetic protein compare
Atu0101 -1.5 -2.8 cytochrome c compare
Atu3009 -1.5 -1.0 exopolysaccharide production protein compare
Atu4072 -1.5 -1.1 nodulation protein N compare
Atu4317 -1.5 -2.8 TetR family transcriptional regulator compare
Atu4773 -1.5 -1.8 two component response regulator compare
Atu1417 -1.5 -6.2 enoyl-CoA hydratase compare
Atu6098 -1.4 -0.7 transcriptional regulator, HTH family compare
Atu1129 -1.4 -7.0 excinuclease ABC chain C compare
Atu3663 -1.4 -0.7 hypothetical protein compare
Atu5430 -1.4 -1.7 hypothetical protein compare
Atu1836 -1.4 -1.6 hypothetical protein compare
Atu1439 -1.4 -2.0 hypothetical protein compare
Atu1028 -1.4 -1.9 hypothetical protein compare
Atu1213 -1.3 -1.9 hypothetical protein compare
Atu0544 -1.3 -1.4 hypothetical protein compare
Atu4618 -1.3 -6.7 dTDP-rhamnose-3,5-epimerase compare
Atu1163 -1.3 -1.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3604 -1.3 -1.7 hypoxanthine phosphoribosyltransferase compare
Atu2183 -1.3 -4.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2634 -1.3 -1.2 hypothetical protein compare
Atu1566 -1.3 -1.2 hypothetical protein compare
Atu1308 -1.3 -3.5 aspartate carbamoyl transferase catalytic subunit compare
Atu2379 -1.3 -6.3 phosphomannomutase compare
Atu1688 -1.2 -3.8 indole-3-glycerol-phosphate synthase compare
Atu5475 -1.2 -2.0 hypothetical protein compare
Atu2052 -1.2 -4.3 hypothetical protein compare
Atu0876 -1.2 -1.6 superoxide dismutase compare
Atu1422 -1.2 -5.5 transcriptional regulator, MarR family compare
Atu0361 -1.2 -2.3 transcriptional regulator compare
Atu0141 -1.2 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu0237 -1.2 -2.3 hypothetical protein compare
Atu0749 -1.2 -2.2 biotin synthesis BioY protein compare
Atu0894 -1.2 -1.7 ABC transporter, membrane spanning protein compare
Atu1039 -1.2 -3.0 DNA repair protein RecO compare
Atu0977 -1.1 -2.6 serine protease DO-like protease compare
Atu2555 -1.1 -3.8 L-lysine 2,3-aminomutase compare
Atu4610 -1.1 -5.6 sugar nucleotide epimerase/dehydratase compare
Atu2376 -1.1 -1.5 hypothetical protein compare
Atu0533 -1.1 -1.1 putative inhibitor of septum formation compare
Atu2192 -1.1 -1.1 hypothetical protein compare
Atu4338 -1.1 -3.6 hypothetical protein compare
Atu0659 -1.1 -4.5 NTP pyrophosphohydrolase, MutT family compare
Atu0660 -1.1 -4.4 hydrolase compare
Atu0777 -1.1 -0.7 hypothetical protein compare
Atu3469 -1.1 -2.5 phosphoglyceromutase compare
Atu2083 -1.1 -2.9 DNA repair protein RecN compare
Atu0188 -1.1 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu6131 -1.1 -3.5 TraR Antiactivator compare
Atu2515 -1.1 -3.0 ABC transporter, nucleotide binding/ATPase protein (dipeptide) compare
Atu4418 -1.1 -2.8 glutaryl-CoA dehydrogenase compare
Atu4346 -1.1 -4.5 hypothetical protein compare
Atu2650 -1.0 -4.4 glycerol-3-phosphate dehydrogenase compare
Atu3311 -1.0 -7.3 phosphomannose isomerase compare
Atu3910 -1.0 -2.9 LamB/YcsF family protein compare
Atu1141 -1.0 -3.4 Phosphoribosylglycinamide synthetase compare
Atu3744 -1.0 -5.9 ABC transporter permease compare
Atu3467 -1.0 -1.3 hypothetical protein compare
Atu2648 -1.0 -2.6 hypothetical protein compare
Atu0189 -1.0 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu1364 -1.0 -3.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4040 -1.0 -1.5 hypothetical protein compare
Atu1077 -1.0 -3.0 DNA repair protein compare
Atu2824 -1.0 -2.7 hypothetical protein compare
Atu2797 -1.0 -2.4 cobalamin biosynthesis protein compare
Atu4407 -1.0 -2.3 periplasmic nitrate reductase, NapD protein compare
Atu0923 -1.0 -4.8 hypothetical protein compare
Atu3121 -1.0 -0.9 cold shock protein compare
Atu0400 -1.0 -2.0 orotate phosphoribosyltransferase compare
Atu1853 -1.0 -2.5 hypothetical protein compare
Atu4897 -1.0 -1.0 hypothetical protein compare
Atu4614 -1.0 -4.1 glycosyltransferase compare
Atu2235 -0.9 -1.0 hypothetical protein compare
Atu0647 -0.9 -4.1 phosphoribosylamine--glycine ligase compare
Atu4217 -0.9 -1.2 TetR family transcriptional regulator compare
Atu2522 -0.9 -4.8 agrobacterium chromosomal virulence protein B compare
Atu0836 -0.9 -1.8 Glutathione-S-transferase compare
Atu0039 -0.9 -1.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu5493 -0.9 -3.2 hypothetical protein compare
Atu1464 -0.9 -3.3 glycine cleavage system T protein, aminomethyltransferase compare
Atu1103 -0.9 -2.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu3692 -0.9 -3.3 sigma factor compare
Atu1754 -0.9 -1.2 hypothetical protein compare
Atu3249 -0.9 -3.3 septum formation inhibitor compare
Atu1536 -0.9 -3.6 cytochrome C oxidase, FixO chain compare
Atu8133 -0.9 -1.8 hypothetical protein compare
Atu1805 -0.9 -2.2 hypothetical protein compare
Atu4616 -0.9 -1.1 dTDP-4-dehydrorhamnose reductase compare
Atu3912 -0.9 -2.6 hypothetical protein compare
Atu3110 -0.9 -2.8 hypothetical protein compare
Atu4019 -0.9 -3.5 two component response regulator compare
Atu2746 -0.9 -1.2 hypothetical protein compare
Atu1844 -0.9 -1.6 Phosphoribosylformylglycinamidine synthetase compare
Atu3688 -0.9 -1.7 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu2682 -0.9 -1.7 hypothetical protein compare
Atu0966 -0.9 -1.6 hypothetical protein compare
Atu0093 -0.9 -2.8 Recombination protein compare
Atu0041 -0.9 -1.1 glutamine amidotransferase compare
Atu3353 -0.9 -4.1 mannose-1-phosphate guanylyltransferase compare
Atu2044 -0.9 -3.7 HFLC protein compare
Atu8195 -0.9 -1.7 hypothetical protein compare
Atu8138 -0.9 -0.9 hypothetical protein compare
Atu2620 -0.8 -0.9 hypothetical protein compare
Atu3215 -0.8 -3.1 oligopeptide ABC transporter ATPase compare
Atu1850 -0.8 -1.5 phosphoribosylformylglycinamidine synthetase II compare
Atu5164 -0.8 -0.7 type IV secretion protein AvhB3 compare
Atu4615 -0.8 -3.9 glucose-1-phosphate thymidylyltransferase compare
Atu0762 -0.8 -1.7 hypothetical protein compare
Atu0938 -0.8 -1.3 transcriptional regulator, MerR family compare
Atu1307 -0.8 -2.8 dihydroorotase compare
Atu0812 -0.8 -2.1 hypothetical protein compare
Atu1466 -0.8 -1.2 hypothetical protein compare
Atu2289 -0.8 -5.5 anthranilate synthase component I and II compare
Atu3755 -0.8 -2.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0043 -0.8 -1.3 imidazoleglycerol-phosphate dehydratase compare
Atu2120 -0.8 -3.0 O-methyltransferase compare
Atu1099 -0.8 -2.3 hypothetical protein compare
Atu2633 -0.8 -0.7 RhtB family transporter compare
Atu4393 -0.8 -3.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
Atu3336 -0.8 -1.1 hypothetical protein compare
Atu1048 -0.8 -2.7 ABC transporter, membrane spanning protein compare
Atu2441 -0.8 -1.2 RNA methylase compare
Atu6189 -0.8 -1.1 protein secretion chaperone compare
Atu1074 -0.7 -3.6 NAD/NADP dependent oxidoreductase compare
Atu3913 -0.7 -3.9 biotin carboxylase compare
Atu0499 -0.7 -3.6 hypothetical protein compare
Atu2146 -0.7 -1.7 hypothetical protein compare
Atu4617 -0.7 -3.6 dTDP-D-glucose-4,6-dehydratase compare
Atu8041 -0.7 -1.4 hypothetical protein compare
Atu0038 -0.7 -2.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0422 -0.7 -0.9 ABC transporter, membrane spanning protein compare
Atu3246 -0.7 -2.1 amino acid ABC transporter substrate-binding protein compare
Atu1683 -0.7 -1.4 hypothetical protein compare
Atu2694 -0.7 -1.7 hypothetical protein compare
Atu1484 -0.7 -2.9 transcriptional regulator compare
Atu2801 -0.7 -1.8 precorrin-2 C20 methyltransferase compare
Atu2053 -0.7 -3.3 FAD dependent oxidoreductase compare
Atu5468 -0.7 -0.9 hypothetical protein compare
Atu3423 -0.7 -1.0 hypothetical protein compare
Atu1173 -0.7 -4.5 MFS permease compare
Atu1602 -0.7 -2.8 transcriptional activator, Crp family compare
Atu4148 -0.7 -3.0 UDP-glucuronic acid epimerase compare
Atu1530 -0.7 -3.3 nitrogen fixation protein FixG compare
Atu3757 -0.7 -0.7 hypothetical protein compare
Atu1780 -0.7 -3.4 ATP-dependent DNA helicase compare
Atu2267 -0.7 -2.7 hypothetical protein compare
Atu3006 -0.7 -2.2 hypothetical protein compare
Atu0086 -0.7 -0.7 ribosome-binding factor A compare
Atu2808 -0.7 -2.8 cobyric acid synthase compare
Atu1810 -0.7 -0.7 hypothetical protein compare
Atu1687 -0.7 -3.0 anthranilate phosphoribosyltransferase compare
Atu0976 -0.7 -1.6 cycL protein compare
Atu2184 -0.7 -1.8 transcriptional regulator, AsnC family compare
Atu5030 -0.7 -3.6 hypothetical protein compare
Atu0138 -0.7 -3.9 surfeit 1 compare
Atu2001 -0.7 -3.6 excinuclease ABC subunit B compare
Atu2275 -0.7 -1.8 hypothetical protein compare
Atu2799 -0.7 -1.9 precorrin-6x reductase compare
Atu8025 -0.7 -0.6 hypothetical protein compare
Atu1770 -0.7 -3.3 glutamine synthetase compare
Atu0161 -0.7 -3.8 biopolymer transport protein compare
Atu2378 -0.7 -1.4 hypothetical protein compare
Atu3963 -0.7 -3.1 GntR family transcriptional regulator compare
Atu0050 -0.7 -2.4 two component response regulator compare
Atu0786 -0.7 -1.8 peptidase, family M16 compare
Atu6104 -0.7 -2.1 conserved hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days across organisms