Experiment set6IT005 for Agrobacterium fabrum C58

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Atu4317 -3.1 -5.1 TetR family transcriptional regulator compare
Atu3469 -2.7 -4.8 phosphoglyceromutase compare
Atu3730 -2.2 -2.0 hypothetical protein compare
Atu3763 -2.1 -2.7 hypothetical protein compare
Atu0031 -1.7 -2.0 PTS system, IIA component compare
Atu0399 -1.6 -5.1 dihydroorotase compare
Atu1542 -1.6 -6.0 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1030 -1.6 -1.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0769 -1.5 -1.5 protoheme IX farnesyltransferase compare
Atu1163 -1.4 -2.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0421 -1.3 -1.9 ABC transporter, membrane spanning protein compare
Atu1844 -1.3 -3.3 Phosphoribosylformylglycinamidine synthetase compare
Atu1359 -1.3 -1.0 dnaK deletion suppressor protein compare
Atu0141 -1.3 -1.8 cytochrome O ubiquinol oxidase subunit I compare
Atu1110 -1.3 -2.2 cytosol aminopeptidase compare
Atu1466 -1.3 -1.7 hypothetical protein compare
Atu0434 -1.2 -1.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2554 -1.2 -2.1 lysyl-tRNA synthetase compare
Atu4773 -1.1 -2.4 two component response regulator compare
Atu2125 -1.1 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu0322 -1.1 -4.8 enoyl CoA hydratase compare
Atu3481 -1.1 -4.3 enoyl-CoA hydratase compare
Atu0030 -1.1 -1.6 phosphocarrier protein HPr compare
Atu0331 -1.1 -2.3 sigma-54 modulation protein compare
Atu4217 -1.0 -1.1 TetR family transcriptional regulator compare
Atu0298 -1.0 -4.8 orotidine 5 compare
Atu2684 -1.0 -1.8 hypothetical protein compare
Atu2793 -1.0 -4.0 cobyrinic acid a,c-diamide synthase compare
Atu1225 -1.0 -1.8 hypothetical protein compare
Atu2555 -1.0 -3.0 L-lysine 2,3-aminomutase compare
Atu0039 -1.0 -1.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu3012 -1.0 -2.0 hypothetical protein compare
Atu0486 -1.0 -4.2 dihydroorotate dehydrogenase compare
Atu2193 -1.0 -1.3 hypothetical protein compare
Atu2692 -1.0 -3.3 intracellular septation protein compare
Atu2207 -1.0 -2.4 two component sensor kinase compare
Atu1364 -1.0 -3.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3505 -1.0 -5.2 3-hydroxyisobutyryl-CoA hydrolase compare
Atu1620 -1.0 -6.1 triosephosphate isomerase compare
Atu4468 -0.9 -4.4 iron transport ABC transporter permease compare
Atu0361 -0.9 -2.2 transcriptional regulator compare
Atu3739 -0.9 -2.8 phosphoglycerate kinase compare
Atu3394 -0.9 -4.1 iron ABC transporter ATPase compare
Atu0142 -0.9 -2.1 cytochrome o ubiquinol oxidase subunit II compare
Atu1810 -0.9 -1.3 hypothetical protein compare
Atu2805 -0.9 -3.5 cobalamin synthesis protein compare
Atu1327 -0.9 -2.4 NADH-ubiquinone oxidoreductase compare
Atu2293 -0.9 -1.7 hypothetical protein compare
Atu3293 -0.9 -4.6 D-amino acid dehydrogenase small subunit compare
Atu2800 -0.9 -3.1 precorrin-3B C17-methyltransferase compare
Atu0400 -0.9 -2.4 orotate phosphoribosyltransferase compare
Atu3475 -0.9 -4.2 acetyl-CoA C-acetyltransferase compare
Atu0062 -0.9 -4.9 transcriptional regulator, ROK family compare
Atu1850 -0.8 -1.7 phosphoribosylformylglycinamidine synthetase II compare
Atu8025 -0.8 -1.2 hypothetical protein compare
Atu1439 -0.8 -1.2 hypothetical protein compare
Atu4446 -0.8 -4.1 hypothetical protein compare
Atu4541 -0.8 -3.3 carboxymuconolactone decarboxylase compare
Atu2808 -0.8 -4.3 cobyric acid synthase compare
Atu2809 -0.8 -4.4 cobalamin biosynthesis protein compare
Atu1739 -0.7 -2.8 permease compare
Atu1845 -0.7 -2.9 phosphoribosylformylglycinamidine synthase I compare
Atu4514 -0.7 -2.0 RpiR family transcriptional regulator compare
Atu2650 -0.7 -3.8 glycerol-3-phosphate dehydrogenase compare
Atu4108 -0.7 -4.3 ribonuclease D compare
Atu2640 -0.7 -2.4 hypothetical protein compare
Atu3593 -0.7 -3.8 hypothetical protein compare
Atu3474 -0.7 -4.8 acyl-CoA dehydrogenase compare
Atu1891 -0.7 -2.1 cobalamin biosynthesis protein compare
Atu0894 -0.7 -1.3 ABC transporter, membrane spanning protein compare
Atu0422 -0.7 -1.7 ABC transporter, membrane spanning protein compare
Atu2807 -0.7 -3.8 cob(I)alamin adenosyltransferase compare
Atu3472 -0.7 -2.9 2-oxoisovalerate dehydrogenase subunit beta compare
Atu3162 -0.7 -3.7 LacI family transcriptional regulator compare
Atu3471 -0.7 -5.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
Atu2115 -0.7 -4.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0886 -0.7 -1.2 hypothetical protein compare
Atu0659 -0.7 -2.8 NTP pyrophosphohydrolase, MutT family compare
Atu1803 -0.7 -4.1 cold shock protein compare
Atu2662 -0.7 -1.3 acetyltransferase compare
Atu2267 -0.7 -2.1 hypothetical protein compare
Atu2804 -0.7 -4.6 cobaltochelatase subunit compare
Atu4471 -0.7 -3.9 ABC transporter substrate-binding protein compare
Atu3478 -0.7 -3.7 3-methylcrotonoyl-CoA carboxylase beta subunit compare
Atu3485 -0.6 -4.3 short chain dehydrogenase compare
Atu6114 -0.6 -1.1 hypothetical protein compare
Atu1307 -0.6 -2.8 dihydroorotase compare
Atu5430 -0.6 -1.1 hypothetical protein compare
Atu5475 -0.6 -1.6 hypothetical protein compare
Atu2127 -0.6 -3.6 L-carnitine dehydratase compare
Atu1522 -0.6 -2.8 transcriptional regulator, LacI family compare
Atu2052 -0.6 -3.0 hypothetical protein compare
Atu1204 -0.6 -2.2 potassium uptake protein compare
Atu3479 -0.6 -3.5 3-methylcrotonyl-CoA carboxylase subunit alpha compare
Atu0269 -0.6 -2.2 exodeoxyribonuclease VII large subunit compare
Atu4674 -0.6 -4.3 GntR family transcriptional regulator compare
Atu3473 -0.6 -3.4 2-oxoisovalerate dehydrogenase subunit alpha compare
Atu2028 -0.6 -1.3 transcriptional regulator, ArsR family compare
Atu0085 -0.6 -2.0 tRNA pseudouridine 55 synthase compare
Atu0017 -0.6 -1.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0050 -0.6 -2.3 two component response regulator compare
Atu0295 -0.6 -1.7 hypothetical protein compare
Atu2802 -0.6 -3.7 precorrin-8X methylmutase compare
Atu2057 -0.6 -1.5 DNA helicase II compare
Atu0658 -0.6 -3.2 phosphate permease compare
Atu0647 -0.6 -2.4 phosphoribosylamine--glycine ligase compare
Atu4643 -0.6 -2.1 hypothetical protein compare
Atu3608 -0.6 -2.6 hypothetical protein compare
Atu1075 -0.6 -2.2 amidophosphoribosyltransferase compare
Atu0185 -0.6 -1.6 methylglyoxal synthase compare
Atu0237 -0.6 -2.2 hypothetical protein compare
Atu0966 -0.6 -2.0 hypothetical protein compare
Atu1339 -0.6 -2.0 ribonuclease E compare
Atu3337 -0.6 -3.4 LacI family transcriptional regulator compare
Atu0981 -0.6 -3.7 glutamate-ammonia-ligase adenylyltransferase compare
Atu3480 -0.5 -3.2 hydroxymethylglutaryl-CoA lyase compare
Atu1629 -0.5 -0.8 transcriptional regulator, ArsR family compare
Atu4124 -0.5 -2.8 branched chain amino acid ABC transporter ATPase compare
Atu3476 -0.5 -1.7 AsnC family transcriptional regulator compare
Atu4470 -0.5 -3.6 iron ABC transporter ATPase compare
Atu8165 -0.5 -1.3 hypothetical protein compare
Atu2532 -0.5 -2.1 transcriptional regulator, MarR family compare
Atu3014 -0.5 -1.3 hypothetical protein compare
Atu1642 -0.5 -1.3 hypothetical protein compare
Atu0029 -0.5 -2.3 S-adenosylhomocysteine hydrolase compare
Atu1140 -0.5 -1.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4779 -0.5 -1.8 hypothetical protein compare
Atu3083 -0.5 -2.8 hypothetical protein compare
Atu1679 -0.5 -1.3 peptidyl prolyl cis-trans isomerase compare
Atu2796 -0.5 -2.7 precorrin-4 C11-methyltransferase compare
Atu2798 -0.5 -1.9 precorrin-6y methyltransferase compare
Atu4329 -0.5 -2.5 polysaccharide export protein compare
Atu0977 -0.5 -1.7 serine protease DO-like protease compare
Atu3580 -0.5 -3.5 methylmalonyl-CoA mutase compare
Atu2209 -0.5 -2.0 pyrroline-5-carboxylate reductase compare
Atu1308 -0.5 -2.2 aspartate carbamoyl transferase catalytic subunit compare
Atu3006 -0.5 -2.1 hypothetical protein compare
Atu3926 -0.5 -2.3 translation initiation inhibitor compare
Atu3392 -0.5 -1.7 methyltransferase compare
Atu3727 -0.5 -1.9 hypothetical protein compare
Atu1141 -0.5 -2.6 Phosphoribosylglycinamide synthetase compare
Atu8130 -0.5 -2.9 hypothetical protein compare
Atu3249 -0.5 -2.9 septum formation inhibitor compare
Atu1805 -0.5 -2.0 hypothetical protein compare
Atu0206 -0.5 -1.2 hypothetical protein compare
Atu1677 -0.5 -1.4 queuine tRNA-ribosyltransferase compare
Atu3873 -0.5 -2.9 hypothetical protein compare
Atu6045 -0.5 -1.0 replication protein C compare
Atu2799 -0.5 -1.8 precorrin-6x reductase compare
Atu5145 -0.5 -1.4 acetyltransferase compare
Atu0690 -0.5 -0.9 hypothetical protein compare
Atu4346 -0.4 -3.1 hypothetical protein compare
Atu5517 -0.4 -1.6 hypothetical protein compare
Atu1076 -0.4 -1.7 colicin V production protein compare
Atu1634 -0.4 -1.0 hypothetical protein compare
Atu2801 -0.4 -1.8 precorrin-2 C20 methyltransferase compare
Atu1103 -0.4 -1.4 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1445 -0.4 -1.9 two component sensor kinase compare
Atu5142 -0.4 -0.7 hypothetical protein compare
Atu4148 -0.4 -1.8 UDP-glucuronic acid epimerase compare
Atu1449 -0.4 -1.7 potassium uptake protein compare
Atu0040 -0.4 -0.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4029 -0.4 -2.1 gluconolactonase compare
Atu8190 -0.4 -1.8 hypothetical protein compare
Atu1116 -0.4 -1.5 two component response regulator compare
Atu0149 -0.4 -1.4 enoyl-(acyl-carrier-protein) reductase compare
Atu2128 -0.4 -3.1 acetolactate synthase large subunit compare
Atu0846 -0.4 -1.1 transcriptional regulator, MarR family compare
Atu3011 -0.4 -1.3 ArsR family transcriptional regulator compare
Atu3754 -0.4 -2.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1701 -0.4 -1.0 protein-L-isoaspartate O-methyltransferase compare
Atu2616 -0.4 -2.3 hypothetical protein compare
Atu3413 -0.4 -1.4 AsnC family transcriptional regulator compare
Atu8133 -0.4 -1.4 hypothetical protein compare
Atu0611 -0.4 -2.0 ABC transporter, membrane spanning protein compare
Atu2824 -0.4 -1.5 hypothetical protein compare
Atu4364 -0.4 -2.1 LacI family transcriptional regulator compare
Atu0138 -0.4 -2.5 surfeit 1 compare
Atu2648 -0.4 -1.5 hypothetical protein compare
Atu1904 -0.4 -1.4 transcriptional regulator compare
Atu2192 -0.4 -0.7 hypothetical protein compare
Atu4129 -0.4 -1.8 3-hydroxyisobutyrate dehydrogenase compare
Atu2578 -0.4 -1.9 cAMP-dependent protein kinase regulatory subunit compare
Atu3395 -0.4 -2.1 iron (III ABC transporter permease ABC transporter permease compare
Atu2068 -0.4 -1.4 hypothetical protein compare
Atu3486 -0.4 -0.7 DeoR family transcriptional regulator compare
Atu2827 -0.4 -1.6 hypothetical protein compare
Atu1836 -0.4 -0.9 hypothetical protein compare
Atu1748 -0.4 -2.8 NIFU-like protein compare
Atu0277 -0.4 -1.9 hypothetical protein compare
Atu0905 -0.4 -1.9 dnaK suppressor protein compare
Atu2814 -0.4 -2.3 zinc-binding dehydrogenase compare
Atu3463 -0.4 -1.9 non-heme chloroperoxidase compare
Atu4079 -0.4 -1.7 hypothetical protein compare
Atu2072 -0.4 -2.0 ribosomal protein L11 methyltransferase compare
Atu3121 -0.4 -0.6 cold shock protein compare
Atu3740 -0.4 -2.6 fructose bisphosphate aldolase compare
Atu3510 -0.4 -1.0 amidohydrolase compare
Atu0503 -0.4 -3.1 enoyl-CoA hydratase compare
Atu4677 -0.4 -0.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in lb experiments

For lb LB across organisms