Experiment set67S62 for Escherichia coli BW25113

Compare to:

Cytidine 0.41115 mM carbon source

200 most important genes:

  gene name fitness t score description  
b3390 aroK -4.3 -4.2 shikimate kinase I (NCBI) compare
b1192 ldcA -3.8 -8.2 L,D-carboxypeptidase A (NCBI) compare
b0200 gmhB -3.3 -3.2 hypothetical protein (NCBI) compare
b2763 cysI -3.1 -9.4 sulfite reductase, beta subunit, NAD(P)-binding, heme-binding (NCBI) compare
b2752 cysD -3.1 -9.0 sulfate adenylyltransferase subunit 2 (NCBI) compare
b2762 cysH -3.1 -11.2 phosphoadenosine phosphosulfate reductase (NCBI) compare
b0033 carB -3.0 -16.8 carbamoyl-phosphate synthase large subunit (NCBI) compare
b2476 purC -3.0 -4.1 phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) compare
b2414 cysK -3.0 -13.6 cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI) compare
b2751 cysN -3.0 -8.7 sulfate adenylyltransferase subunit 1 (NCBI) compare
b0564 appY -3.0 -1.6 DLP12 prophage; DNA-binding transcriptional activator (NCBI) compare
b3172 argG -3.0 -14.2 argininosuccinate synthase (NCBI) compare
b0004 thrC -2.9 -13.4 threonine synthase (NCBI) compare
b4383 deoB -2.9 -10.5 phosphopentomutase (NCBI) conserved
b2329 aroC -2.9 -6.9 chorismate synthase (NCBI) compare
b0522 purK -2.8 -10.4 phosphoribosylaminoimidazole carboxylase (NCBI) compare
b2023 hisH -2.8 -9.0 imidazole glycerol phosphate synthase subunit HisH (NCBI) compare
b2750 cysC -2.8 -6.1 adenylylsulfate kinase (NCBI) compare
b3368 cysG -2.8 -16.5 fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase (NCBI) compare
b0908 aroA -2.8 -11.3 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) compare
b0071 leuD -2.8 -9.0 isopropylmalate isomerase small subunit (NCBI) compare
b1693 aroD -2.8 -9.2 3-dehydroquinate dehydratase (NCBI) compare
b2764 cysJ -2.8 -11.6 sulfite reductase, alpha subunit, flavoprotein (NCBI) compare
b2019 hisG -2.8 -6.4 ATP phosphoribosyltransferase (NCBI) compare
b3389 aroB -2.8 -11.9 3-dehydroquinate synthase (NCBI) compare
b3831 udp -2.7 -14.9 uridine phosphorylase (NCBI) conserved
b4013 metA -2.7 -11.4 homoserine O-succinyltransferase (NCBI) compare
b3939 metB -2.7 -14.1 cystathionine gamma-synthase (NCBI) compare
b2557 purL -2.7 -11.7 phosphoribosylformylglycinamidine synthase (NCBI) compare
b3770 ilvE -2.7 -13.5 branched-chain amino acid aminotransferase (NCBI) compare
b3771 ilvD -2.7 -14.5 dihydroxy-acid dehydratase (NCBI) compare
b2499 purM -2.7 -6.9 phosphoribosylaminoimidazole synthetase (NCBI) compare
b2846 yqeH -2.7 -1.8 orf, hypothetical protein (VIMSS) compare
b3671 ilvB -2.7 -15.1 acetolactate synthase large subunit (NCBI) compare
b2600 tyrA -2.7 -9.7 fused chorismate mutase T/prephenate dehydrogenase (NCBI) compare
b0073 leuB -2.7 -11.7 3-isopropylmalate dehydrogenase (VIMSS) compare
b2026 hisI -2.6 -6.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein (NCBI) compare
b3941 metF -2.6 -10.9 5,10-methylenetetrahydrofolate reductase (NCBI) compare
b3870 glnA -2.6 -4.3 glutamine synthetase (NCBI) compare
b3281 aroE -2.6 -15.9 dehydroshikimate reductase, NAD(P)-binding (NCBI) compare
b2340 sixA -2.6 -4.8 phosphohistidine phosphatase (NCBI) compare
b0907 serC -2.6 -8.8 phosphoserine aminotransferase (NCBI) compare
b0386 proC -2.6 -8.7 pyrroline-5-carboxylate reductase (NCBI) compare
b3957 argE -2.6 -14.4 acetylornithine deacetylase (NCBI) compare
b3959 argB -2.6 -10.8 acetylglutamate kinase (RefSeq) compare
b3956 ppc -2.6 -17.4 phosphoenolpyruvate carboxylase (NCBI) compare
b2567 rnc -2.6 -1.7 ribonuclease III (NCBI) compare
b2020 hisD -2.5 -10.3 histidinol dehydrogenase (NCBI) compare
b3774 ilvC -2.5 -14.6 ketol-acid reductoisomerase (NCBI) compare
b4006 purH -2.5 -14.4 bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI) compare
b3772 ilvA -2.5 -13.4 threonine dehydratase (NCBI) compare
b0002 thrA -2.5 -12.8 bifunctional aspartokinase I/homeserine dehydrogenase I (NCBI) compare
b4702 mgtL -2.5 -3.0 regulatory leader peptide for mgtA (NCBI) compare
b0888 trxB -2.5 -6.8 thioredoxin reductase, FAD/NAD(P)-binding (NCBI) compare
b2021 hisC -2.5 -9.8 histidinol-phosphate aminotransferase (NCBI) compare
b4005 purD -2.5 -12.6 phosphoribosylamine--glycine ligase (NCBI) compare
b0242 proB -2.5 -9.5 gamma-glutamyl kinase (NCBI) compare
b0032 carA -2.5 -9.7 carbamoyl-phosphate synthase small subunit (NCBI) compare
b3008 metC -2.5 -10.5 cystathionine beta-lyase (NCBI) compare
b2025 hisF -2.5 -7.0 imidazole glycerol phosphate synthase subunit HisF (NCBI) compare
b0243 proA -2.5 -8.6 gamma-glutamyl phosphate reductase (NCBI) compare
b3958 argC -2.4 -13.3 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
b0072 leuC -2.4 -13.3 isopropylmalate isomerase large subunit (NCBI) compare
b1260 trpA -2.4 -4.7 tryptophan synthase subunit alpha (NCBI) compare
b1263 trpD -2.4 -2.7 bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) compare
b3773 ilvY -2.4 -9.6 DNA-binding transcriptional dual regulator (NCBI) compare
b2022 hisB -2.4 -7.8 imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase (VIMSS) compare
b4388 serB -2.4 -8.4 3-phosphoserine phosphatase (NCBI) compare
b0003 thrB -2.4 -8.8 homoserine kinase (NCBI) compare
b1261 trpB -2.4 -4.0 tryptophan synthase subunit beta (NCBI) compare
b3839 tatC -2.4 -10.3 TatABCE protein translocation system subunit (NCBI) compare
b0720 gltA -2.4 -9.0 citrate synthase (NCBI) compare
b2312 purF -2.3 -7.6 amidophosphoribosyltransferase (NCBI) compare
b0074 leuA -2.3 -10.3 2-isopropylmalate synthase (NCBI) compare
b2838 lysA -2.3 -10.6 diaminopimelate decarboxylase, PLP-binding (NCBI) compare
b0726 sucA -2.3 -6.5 alpha-ketoglutarate decarboxylase (NCBI) compare
b3672 ivbL -2.3 -3.3 ilvB operon leader peptide (NCBI) compare
b0114 aceE -2.3 -1.5 pyruvate dehydrogenase subunit E1 (NCBI) compare
b2818 argA -2.2 -9.5 N-acetylglutamate synthase (NCBI) compare
b3960 argH -2.2 -12.2 argininosuccinate lyase (NCBI) compare
b2024 hisA -2.2 -4.1 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS) compare
b0523 purE -2.2 -6.6 phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) compare
b2913 serA -2.1 -7.8 D-3-phosphoglycerate dehydrogenase (NCBI) compare
b2479 gcvR -2.1 -7.4 transcriptional regulation of gcv operon (VIMSS) compare
b3764 yifE -2.1 -5.9 hypothetical protein (NCBI) compare
b3916 pfkA -2.0 -5.1 6-phosphofructokinase (NCBI) compare
b4214 cysQ -1.9 -11.2 PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) compare
b4242 mgtA -1.9 -10.7 magnesium transporter (NCBI) compare
b3781 trxA -1.9 -4.3 thioredoxin 1 (VIMSS) compare
b4480 hdfR -1.9 -8.3 transcriptional regulator HdfR (NCBI) compare
b2784 relA -1.9 -10.4 (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) compare
b2839 lysR -1.8 -5.4 DNA-binding transcriptional dual regulator (NCBI) compare
b2143 cdd -1.8 -3.3 cytidine deaminase (NCBI) conserved
b3728 pstS -1.8 -3.6 phosphate transporter subunit (NCBI) compare
b1291 sapD -1.8 -2.9 predicted antimicrobial peptide transporter subunit (NCBI) compare
b1104 ycfL -1.7 -2.5 hypothetical protein (NCBI) compare
b1262 trpC -1.7 -5.0 N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase (VIMSS) compare
b1264 trpE -1.7 -5.0 anthranilate synthase component I (NCBI) compare
b0113 pdhR -1.7 -4.9 transcriptional regulator of pyruvate dehydrogenase complex (NCBI) compare
b1882 cheY -1.7 -1.0 chemotaxis regulator transmitting signal to flagellar motor component (NCBI) compare
b3792 wzxE -1.7 -8.4 O-antigen translocase (NCBI) compare
b2528 iscA -1.7 -3.3 iron-sulfur cluster assembly protein (NCBI) compare
b0145 dksA -1.7 -3.7 DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) compare
b1332 ynaJ -1.7 -1.3 predicted inner membrane protein (NCBI) compare
b0049 apaH -1.7 -4.6 diadenosinetetraphosphatase (NCBI) compare
b3082 ygjM -1.7 -2.7 predicted DNA-binding transcriptional regulator (NCBI) compare
b3213 gltD -1.7 -9.4 glutamate synthase, 4Fe-4S protein, small subunit (NCBI) compare
b1709 btuD -1.6 -1.9 vitamin B12-transporter ATPase (NCBI) compare
b1129 phoQ -1.6 -1.1 sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) compare
b4676 yoaK -1.6 -0.9 expressed protein (RefSeq) compare
b1363 trkG -1.5 -1.1 Rac prophage; potassium transporter subunit (NCBI) compare
b0439 lon -1.5 -5.9 DNA-binding ATP-dependent protease La (NCBI) compare
b4146 yjeK -1.5 -3.2 predicted lysine aminomutase (NCBI) compare
b2935 tktA -1.5 -2.9 transketolase 1, thiamin-binding (NCBI) compare
b2501 ppk -1.5 -9.0 polyphosphate kinase (NCBI) compare
b3469 zntA -1.5 -7.9 zinc, cobalt and lead efflux system (NCBI) compare
b3212 gltB -1.5 -11.8 glutamate synthase, large subunit (NCBI) compare
b2599 pheA -1.5 -6.1 fused chorismate mutase P/prephenate dehydratase (NCBI) compare
b3741 gidA -1.5 -5.4 glucose-inhibited division protein A (NCBI) compare
b1429 tehA -1.5 -2.1 potassium-tellurite ethidium and proflavin transporter (NCBI) compare
b2531 iscR -1.5 -2.0 DNA-binding transcriptional repressor (NCBI) compare
b0080 fruR -1.5 -6.3 DNA-binding transcriptional dual regulator (NCBI) compare
b1712 ihfA -1.5 -2.5 integration host factor subunit alpha (NCBI) compare
b1165 ymgA -1.4 -1.0 hypothetical protein (NCBI) compare
b3806 cyaA -1.3 -4.3 adenylate cyclase (NCBI) compare
b1290 sapF -1.3 -1.9 predicted antimicrobial peptide transporter subunit (NCBI) compare
b3290 trkA -1.3 -3.1 potassium transporter peripheral membrane component (NCBI) compare
b3962 udhA -1.3 -6.0 putative oxidoreductase (VIMSS) compare
b4066 yjcF -1.3 -0.8 hypothetical protein (NCBI) compare
b4590 ybfK -1.3 -1.5 hypothetical protein (RefSeq) compare
b2313 cvpA -1.3 -3.0 membrane protein required for colicin V production (NCBI) compare
b4410 ecnA -1.2 -1.9 entericidin A membrane lipoprotein, antidote entericidin B (NCBI) compare
b3386 rpe -1.2 -0.8 ribulose-phosphate 3-epimerase (NCBI) compare
b0739 tolA -1.2 -4.6 cell envelope integrity inner membrane protein TolA (NCBI) compare
b2500 purN -1.2 -5.9 phosphoribosylglycinamide formyltransferase (NCBI) compare
b0722 sdhD -1.2 -4.3 succinate dehydrogenase cytochrome b556 small membrane subunit (NCBI) compare
b3204 ptsN -1.2 -4.1 sugar-specific enzyme IIA component of PTS (NCBI) compare
b1536 ydeI -1.2 -1.5 hypothetical protein (NCBI) compare
b4647 mokA -1.2 -0.8 no description compare
b0890 ftsK -1.2 -5.2 DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) compare
b1130 phoP -1.2 -1.5 DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) compare
b4155 yjeA -1.1 -0.8 putative lysyl-tRNA synthetase (VIMSS) compare
b3169 nusA -1.1 -3.5 transcription elongation factor NusA (NCBI) compare
b1676 pykF -1.1 -3.4 pyruvate kinase (NCBI) compare
b1161 ycgX -1.1 -1.3 hypothetical protein (NCBI) compare
b1784 yeaH -1.1 -7.1 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
b4171 miaA -1.1 -3.3 tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) compare
b2071 yegJ -1.1 -1.9 hypothetical protein (NCBI) compare
b2422 cysA -1.1 -5.7 sulfate/thiosulfate transporter subunit (NCBI) compare
b0500 ybbD -1.1 -0.7 hypothetical protein (RefSeq) compare
b4685 yrbN -1.1 -2.9 expressed protein (RefSeq) compare
b0630 lipB -1.1 -1.4 protein of lipoate biosynthesis (VIMSS) compare
b0388 aroL -1.1 -3.0 shikimate kinase II (NCBI) compare
b3250 mreC -1.0 -1.0 cell wall structural complex MreBCD transmembrane component MreC (NCBI) compare
b0585 fes -1.0 -5.0 enterobactin/ferric enterobactin esterase (NCBI) compare
b4045 yjbJ -1.0 -1.5 predicted stress response protein (NCBI) compare
b0889 lrp -1.0 -1.7 DNA-binding transcriptional dual regulator, leucine-binding (NCBI) compare
b1269 rluB -1.0 -4.3 23S rRNA pseudouridylate synthase (NCBI) compare
b4048 yjbM -1.0 -1.6 hypothetical protein (NCBI) compare
b1505 ydeT -1.0 -1.4 hypothetical protein (RefSeq) compare
b2330 yfcB -1.0 -1.8 putative adenine-specific methylase (VIMSS) compare
b4177 purA -1.0 -1.3 adenylosuccinate synthetase (NCBI) compare
b3053 glnE -1.0 -6.2 fused deadenylyltransferase/adenylyltransferase for glutamine synthetase (NCBI) compare
b3706 trmE -1.0 -3.8 tRNA modification GTPase (NCBI) compare
b1292 sapC -1.0 -1.5 predicted antimicrobial peptide transporter subunit (NCBI) compare
b3849 trkH -1.0 -6.1 potassium transporter (NCBI) compare
b0767 ybhE -1.0 -2.4 6-phosphogluconolactonase (NCBI) compare
b1188 ycgB -0.9 -4.3 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
b3021 ygiT -0.9 -2.1 predicted DNA-binding transcriptional regulator (NCBI) compare
b1765 ydjA -0.9 -1.1 predicted oxidoreductase (NCBI) compare
b1874 cutC -0.9 -2.2 copper homeostasis protein (NCBI) compare
b2853 ygeI -0.9 -0.6 hypothetical protein (NCBI) compare
b0738 tolR -0.9 -2.7 membrane spanning protein in TolA-TolQ-TolR complex (NCBI) compare
b2259 pmrD -0.9 -1.3 polymyxin resistance protein B (VIMSS) compare
b4215 ytfI -0.9 -1.7 hypothetical protein (NCBI) compare
b1036 ycdZ -0.9 -4.5 orf, hypothetical protein (VIMSS) compare
b0075 leuL -0.9 -3.1 leu operon leader peptide (NCBI) compare
b1545 pinQ -0.9 -0.3 Qin prophage; predicted site-specific recombinase (NCBI) compare
b3035 tolC -0.9 -5.0 outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) compare
b4202 rpsR -0.9 -1.6 30S ribosomal protein S18 (NCBI) compare
b3811 xerC -0.9 -2.0 site-specific tyrosine recombinase XerC (NCBI) compare
b3623 rfaK -0.9 -2.2 lipopolysaccharide core biosynthesis (NCBI) compare
b0122 yacC -0.9 -2.5 orf, hypothetical protein (VIMSS) compare
b0167 glnD -0.9 -2.9 PII uridylyl-transferase (NCBI) compare
b0688 pgm -0.9 -3.7 phosphoglucomutase (NCBI) compare
b0234 yafP -0.9 -1.5 predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) compare
b1594 dgsA -0.9 -3.1 DNA-binding transcriptional repressor (NCBI) compare
b3791 rffA -0.9 -5.5 TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) compare
b4179 vacB -0.9 -4.4 putative enzyme (VIMSS) compare
b1783 yeaG -0.9 -5.4 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
b2423 cysW -0.8 -3.7 sulfate/thiosulfate transporter subunit (NCBI) compare
b0840 deoR -0.8 -3.1 DNA-binding transcriptional repressor (NCBI) compare
b3650 spoT -0.8 -4.0 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (NCBI) compare
b1232 purU -0.8 -3.4 formyltetrahydrofolate deformylase (NCBI) compare
b2285 nuoE -0.8 -1.6 NADH dehydrogenase subunit E (NCBI) compare
b3162 deaD -0.8 -2.9 inducible ATP-independent RNA helicase (VIMSS) compare
b3398 yrfF -0.8 -2.6 predicted inner membrane protein (NCBI) compare
b3726 pstA -0.8 -2.3 phosphate transporter subunit (NCBI) compare
b1600 mdtJ -0.8 -1.8 multidrug efflux system transporter (NCBI) compare
b1058 yceO -0.8 -0.4 hypothetical protein (NCBI) compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Cytidine in Escherichia coli BW25113

For carbon source Cytidine across organisms