Experiment set67S58 for Escherichia coli BW25113

Adenosine 0.3742 mM carbon source

Group: carbon source
Media: Chakraborty_Basal + Adenosine (0.3742 mM), pH=7
Culturing: Keio_ML9a, tube, Aerobic, at 29 (C), shaken=200 rpm
By: Bri Finley on 9/16/24
Media components: 0.25 g/L Ammonium chloride, 0.1 g/L Potassium Chloride, 0.6 g/L Sodium phosphate monobasic monohydrate, 0.3792 g/L Sodium phosphate monobasic, 0.9713 g/L Disodium phosphate, Wolfe's mineral mix (0.03 g/L Magnesium Sulfate Heptahydrate, 0.015 g/L Nitrilotriacetic acid, 0.01 g/L Sodium Chloride, 0.005 g/L Manganese (II) sulfate monohydrate, 0.001 g/L Cobalt chloride hexahydrate, 0.001 g/L Zinc sulfate heptahydrate, 0.001 g/L Calcium chloride dihydrate, 0.001 g/L Iron (II) sulfate heptahydrate, 0.00025 g/L Nickel (II) chloride hexahydrate, 0.0002 g/L Aluminum potassium sulfate dodecahydrate, 0.0001 g/L Copper (II) sulfate pentahydrate, 0.0001 g/L Boric Acid, 0.0001 g/L Sodium Molybdate Dihydrate, 0.003 mg/L Sodium selenite pentahydrate), Wolfe's vitamin mix (0.1 mg/L Pyridoxine HCl, 0.05 mg/L 4-Aminobenzoic acid, 0.05 mg/L Lipoic acid, 0.05 mg/L Nicotinic Acid, 0.05 mg/L Riboflavin, 0.05 mg/L Thiamine HCl, 0.05 mg/L calcium pantothenate, 0.02 mg/L biotin, 0.02 mg/L Folic Acid, 0.001 mg/L Cyanocobalamin)

Specific Phenotypes

For 13 genes in this experiment

For carbon source Adenosine in Escherichia coli BW25113

For carbon source Adenosine across organisms

SEED Subsystems

Subsystem	#Specific
Curli production	3
Deoxyribose and Deoxynucleoside Catabolism	2
Adenosyl nucleosidases	1
CytR regulation	1
Purine conversions	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Purine metabolism
• Pentose phosphate pathway
• Pyrimidine metabolism
• Nicotinate and nicotinamide metabolism
• Biosynthesis of alkaloids derived from histidine and purine

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
purine ribonucleosides degradation	6	6	5
purine deoxyribonucleosides degradation I	4	4	3
purine deoxyribonucleosides degradation II	3	3	2
superpathway of purine deoxyribonucleosides degradation	7	7	4
adenine and adenosine salvage III	4	4	2
adenine and adenosine salvage I	2	2	1
xanthine and xanthosine salvage	2	2	1
guanine and guanosine salvage I	2	2	1
superpathway of pyrimidine deoxyribonucleosides degradation	6	6	2
superpathway of guanine and guanosine salvage	3	3	1
pyrimidine deoxyribonucleosides degradation	3	3	1
adenine and adenosine salvage V	3	3	1
2-deoxy-α-D-ribose 1-phosphate degradation	3	3	1
purine nucleotides degradation II (aerobic)	11	11	3
inosine 5'-phosphate degradation	4	4	1
guanosine nucleotides degradation III	4	4	1
adenosine nucleotides degradation II	5	5	1
nucleoside and nucleotide degradation (archaea)	10	4	2
nucleoside and nucleotide degradation (halobacteria)	6	3	1
fluoroacetate and fluorothreonine biosynthesis	6	1	1
superpathway of purine nucleotide salvage	14	13	2
ureide biosynthesis	7	5	1
salinosporamide A biosynthesis	15	3	1
arsenic detoxification (mammals)	17	8	1