| | gene | name | fitness | t score | description | |
|---|
| b1334 | fnr | +7.0 | 18.4 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b1256 | ompW | +7.0 | 50.6 | outer membrane protein W (NCBI) | compare |
| b3632 | rfaQ | +6.0 | 52.5 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3625 | rfaY | +5.8 | 28.4 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1236 | galU | +5.7 | 28.9 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b0688 | pgm | +5.6 | 18.9 | phosphoglucomutase (NCBI) | compare |
| b0222 | lpcA | +5.6 | 14.7 | phosphoheptose isomerase (NCBI) | compare |
| b3842 | rfaH | +5.6 | 30.5 | transcriptional activator RfaH (NCBI) | compare |
| b3620 | rfaF | +5.4 | 27.3 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b3619 | rfaD | +5.3 | 20.2 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b3052 | rfaE | +5.1 | 26.0 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3630 | rfaP | +5.0 | 39.7 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b3621 | rfaC | +5.0 | 27.8 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3631 | rfaG | +4.9 | 43.3 | glucosyltransferase I (NCBI) | compare |
| b1222 | narX | +4.9 | 9.3 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b0200 | gmhB | +4.9 | 6.6 | hypothetical protein (NCBI) | compare |
| b3627 | rfaI | +4.7 | 32.0 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b4239 | treC | +4.6 | 12.3 | trehalose-6-P hydrolase (NCBI) | compare |
| b3628 | rfaB | +4.0 | 27.9 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b2512 | yfgL | +3.8 | 14.9 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b4177 | purA | +3.5 | 6.0 | adenylosuccinate synthetase (NCBI) | compare |
| b4313 | fimE | +3.4 | 20.2 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b3867 | hemN | +3.1 | 22.6 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b3398 | yrfF | +3.0 | 10.9 | predicted inner membrane protein (NCBI) | compare |
| b4451 | ryhB | +3.0 | 2.4 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b0437 | clpP | +2.9 | 12.6 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b1855 | lpxM | +2.8 | 8.9 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b4178 | yjeB | +2.8 | 12.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2531 | iscR | +2.6 | 2.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3609 | secB | +2.5 | 5.5 | export protein SecB (NCBI) | compare |
| b2215 | ompC | +2.5 | 10.1 | outer membrane porin protein C (NCBI) | compare |
| b2808 | gcvA | +2.5 | 7.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3860 | dsbA | +2.4 | 14.9 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b0438 | clpX | +2.4 | 12.6 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b2684 | mprA | +2.2 | 5.1 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b1659 | ydhB | +2.2 | 3.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1235 | rssB | +2.2 | 11.5 | response regulator of RpoS (NCBI) | compare |
| b1643 | ydhI | +2.2 | 4.4 | predicted inner membrane protein (NCBI) | compare |
| b4675 | yoaJ | +2.1 | 4.2 | expressed protein (RefSeq) | compare |
| b1084 | rne | +2.1 | 6.1 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b3778 | rep | +2.1 | 14.1 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b0782 | moaB | +2.0 | 3.4 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b1185 | dsbB | +2.0 | 4.7 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1556 | b1556 | +2.0 | 4.1 | orf, hypothetical protein (VIMSS) | compare |
| b0683 | fur | +1.9 | 1.8 | ferric uptake regulator (NCBI) | compare |
| b3164 | pnp | +1.9 | 4.6 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b2498 | upp | +1.9 | 3.9 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b0143 | pcnB | +1.8 | 6.3 | poly(A) polymerase I (VIMSS) | compare |
| b3725 | pstB | +1.8 | 1.7 | phosphate transporter subunit (NCBI) | compare |
| b4529 | ydbJ | +1.8 | 1.0 | hypothetical protein (NCBI) | compare |
| b0739 | tolA | +1.8 | 5.0 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b3387 | dam | +1.8 | 13.4 | DNA adenine methylase (NCBI) | compare |
| b4415 | hokE | +1.7 | 4.4 | toxic polypeptide, small (NCBI) | compare |
| b0279 | yagM | +1.7 | 1.9 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1346 | ydaQ | +1.7 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1902 | yecI | +1.7 | 5.3 | predicted ferritin-like protein (NCBI) | compare |
| b0740 | tolB | +1.7 | 5.7 | translocation protein TolB precursor (NCBI) | compare |
| b1758 | b1758 | +1.6 | 1.0 | putative cytochrome oxidase (VIMSS) | compare |
| b4426 | isrA | +1.6 | 2.6 | unknown RNA (NCBI) | compare |
| b1293 | sapB | +1.6 | 1.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1130 | phoP | +1.6 | 2.7 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b1040 | csgD | +1.6 | 3.1 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b0145 | dksA | +1.6 | 3.4 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b0460 | hha | +1.6 | 5.5 | modulator of gene expression, with H-NS (NCBI) | compare |
| b3806 | cyaA | +1.6 | 5.4 | adenylate cyclase (NCBI) | compare |
| b1263 | trpD | +1.6 | 2.3 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b1754 | b1754 | +1.6 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4490 | efeU | +1.5 | 5.2 | no description | compare |
| b0998 | torD | +1.5 | 0.9 | chaperone protein TorD (NCBI) | compare |
| b3290 | trkA | +1.5 | 3.3 | potassium transporter peripheral membrane component (NCBI) | compare |
| b4215 | ytfI | +1.5 | 2.6 | hypothetical protein (NCBI) | compare |
| b1001 | yccE | +1.5 | 0.6 | hypothetical protein (NCBI) | compare |
| b1182 | hlyE | +1.5 | 0.7 | hemolysin E (VIMSS) | compare |
| b1257 | yciE | +1.5 | 0.5 | hypothetical protein (NCBI) | compare |
| b1167 | ymgC | +1.5 | 0.5 | hypothetical protein (NCBI) | compare |
| b1961 | dcm | +1.5 | 1.3 | DNA cytosine methylase (NCBI) | compare |
| b4408 | csrB | +1.5 | 2.6 | CsrA-binding sRNA, antagonizing CsrA regulation (NCBI) | compare |
| b1347 | ydaC | +1.5 | 0.4 | Rac prophage; predicted protein (NCBI) | compare |
| b4570 | lomR | +1.5 | 1.3 | no description | compare |
| b2567 | rnc | +1.5 | 1.0 | ribonuclease III (NCBI) | compare |
| b1767 | ansA | +1.5 | 3.0 | cytoplasmic asparaginase I (NCBI) | compare |
| b1462 | b1462 | +1.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2055 | wcaE | +1.4 | 0.6 | predicted glycosyl transferase (NCBI) | compare |
| b2284 | nuoF | +1.4 | 4.6 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b0178 | hlpA | +1.4 | 3.7 | periplasmic chaperone (NCBI) | compare |
| b0843 | ybjH | +1.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b3545 | proK | +1.4 | 1.3 | tRNA-Pro (NCBI) | compare |
| b4552 | yrhC | +1.4 | 0.7 | no description | compare |
| b4505 | insX | +1.4 | 1.0 | predicted IS protein (RefSeq) | compare |
| b2297 | pta | +1.4 | 1.0 | phosphate acetyltransferase (NCBI) | compare |
| b1567 | intK | +1.4 | 2.1 | Qin prophage; predicted protein (RefSeq) | compare |
| b4630 | ykgP | +1.4 | 1.8 | no description | compare |
| b3761 | trpT | +1.4 | 1.5 | tRNA-Trp (NCBI) | compare |
| b0737 | tolQ | +1.4 | 4.1 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b4155 | yjeA | +1.4 | 1.1 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b2905 | gcvT | +1.4 | 4.9 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b0741 | pal | +1.4 | 4.6 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b1611 | fumC | +1.4 | 4.2 | fumarate hydratase (NCBI) | compare |
| b1877 | yecT | +1.4 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b3405 | ompR | +1.4 | 4.3 | osmolarity response regulator (NCBI) | compare |
| b4535 | yniD | +1.4 | 1.0 | predicted protein (RefSeq) | compare |
| b1551 | b1551 | +1.3 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b1497 | b1497 | +1.3 | 0.7 | putative enzyme (VIMSS) | compare |
| b1499 | ydeO | +1.3 | 0.6 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b2755 | ygbT | +1.3 | 5.6 | hypothetical protein (NCBI) | compare |
| b0439 | lon | +1.3 | 5.2 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b1258 | yciF | +1.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b1690 | ydiM | +1.3 | 2.6 | predicted transporter (NCBI) | compare |
| b2572 | rseA | +1.3 | 2.4 | anti-sigma factor (NCBI) | compare |
| b1165 | ymgA | +1.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b1363 | trkG | +1.3 | 0.8 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b1576 | ydfD | +1.3 | 0.6 | Qin prophage; predicted protein (NCBI) | compare |
| b1563 | relE | +1.3 | 1.7 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b0759 | galE | +1.3 | 5.2 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b2272 | yfbM | +1.3 | 2.5 | hypothetical protein (NCBI) | compare |
| b1624 | b1624 | +1.3 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b2579 | yfiD | +1.3 | 1.5 | pyruvate formate lyase subunit (NCBI) | compare |
| b4589 | ylcI | +1.3 | 0.8 | hypothetical protein (RefSeq) | compare |
| b1351 | racC | +1.3 | 0.7 | Rac prophage; predicted protein (NCBI) | compare |
| b1904 | yecR | +1.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b0080 | fruR | +1.3 | 4.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1264 | trpE | +1.3 | 3.9 | anthranilate synthase component I (NCBI) | compare |
| b1158 | pin | +1.3 | 3.4 | e14 prophage; site-specific DNA recombinase (NCBI) | compare |
| b1954 | dsrA | +1.3 | 1.8 | regulatory antisense RNA (NCBI) | compare |
| b0190 | yaeQ | +1.3 | 3.9 | hypothetical protein (NCBI) | compare |
| b3121 | yhaC | +1.3 | 0.6 | hypothetical protein (NCBI) | compare |
| b2409 | yfeR | +1.3 | 2.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1143 | ymfI | +1.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1409 | ynbB | +1.3 | 0.8 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b0603 | ybdO | +1.3 | 0.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4588 | ylcH | +1.2 | 2.6 | hypothetical protein, DLP12 prophage (RefSeq) | compare |
| b4013 | metA | +1.2 | 3.6 | homoserine O-succinyltransferase (NCBI) | compare |
| b4293 | fecI | +1.2 | 2.7 | KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) | compare |
| b2847 | yqeI | +1.2 | 0.9 | predicted transcriptional regulator (NCBI) | compare |
| b1121 | ycfZ | +1.2 | 2.2 | predicted inner membrane protein (NCBI) | compare |
| b3844 | fre | +1.2 | 5.5 | NAD(P)H-flavin reductase (NCBI) | compare |
| b2625 | yfjI | +1.2 | 1.7 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b4443 | gcvB | +1.2 | 0.4 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b4289 | fecC | +1.2 | 5.8 | KpLE2 phage-like element; iron-dicitrate transporter subunit (NCBI) | compare |
| b3780 | rhlB | +1.2 | 6.0 | ATP-dependent RNA helicase (NCBI) | compare |
| b2421 | cysM | +1.2 | 3.4 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b4410 | ecnA | +1.2 | 1.0 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b3930 | menA | +1.2 | 7.2 | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | compare |
| b2289 | lrhA | +1.2 | 5.5 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b3082 | ygjM | +1.2 | 1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2104 | thiM | +1.2 | 2.6 | hydroxyethylthiazole kinase (NCBI) | compare |
| b2814 | metZ | +1.2 | 1.0 | tRNA-Met (NCBI) | compare |
| b3094 | exuR | +1.2 | 2.9 | negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS) | compare |
| b4190 | yjfP | +1.2 | 3.9 | predicted hydrolase (NCBI) | compare |
| b2876 | b2876 | +1.2 | 3.5 | orf, hypothetical protein (VIMSS) | compare |
| b2051 | wcaH | +1.2 | 0.6 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b1183 | umuD | +1.2 | 1.2 | DNA polymerase V, subunit D (NCBI) | compare |
| b0903 | pflB | +1.2 | 6.7 | pyruvate formate lyase I (NCBI) | compare |
| b1850 | eda | +1.2 | 1.6 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b4025 | pgi | +1.2 | 5.6 | glucose-6-phosphate isomerase (NCBI) | compare |
| b0118 | acnB | +1.1 | 0.7 | aconitate hydratase (NCBI) | compare |
| b4697 | yrdF | +1.1 | 1.9 | no description | compare |
| b3043 | ygiL | +1.1 | 3.9 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1465 | narV | +1.1 | 1.3 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b4325 | yjiC | +1.1 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b4509 | ylcG | +1.1 | 1.6 | DLP12 prophage; predicted protein (NCBI) | compare |
| b0593 | entC | +1.1 | 3.7 | isochorismate synthase (NCBI) | compare |
| b1443 | ydcV | +1.1 | 2.1 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b2279 | nuoK | +1.1 | 1.4 | NADH dehydrogenase subunit K (NCBI) | compare |
| b3337 | bfd | +1.1 | 2.1 | bacterioferritin-associated ferredoxin (NCBI) | compare |
| b4582 | yoeA | +1.1 | 1.6 | no description | compare |
| b0806 | ybiM | +1.1 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1151 | ymfO | +1.1 | 1.9 | e14 prophage; conserved protein (RefSeq) | compare |
| b1699 | ydiS | +1.1 | 2.0 | predicted oxidoreductase with FAD/NAD(P)-binding domain (NCBI) | compare |
| b0580 | ybdJ | +1.1 | 1.2 | predicted inner membrane protein (NCBI) | compare |
| b3101 | yqjF | +1.1 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1604 | ydgH | +1.1 | 2.6 | hypothetical protein (NCBI) | compare |
| b2189 | proL | +1.1 | 1.0 | tRNA-Pro (NCBI) | compare |
| b1129 | phoQ | +1.1 | 0.7 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b3562 | yiaA | +1.1 | 6.2 | orf, hypothetical protein (VIMSS) | compare |
| b3442 | yhhZ | +1.1 | 0.4 | hypothetical protein (NCBI) | compare |
| b2277 | nuoM | +1.1 | 4.3 | NADH dehydrogenase subunit M (NCBI) | compare |
| b2257 | arnT | +1.1 | 3.7 | 4-amino-4-deoxy-L-arabinose transferase (NCBI) | compare |
| b0303 | ykgI | +1.1 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b0503 | ybbB | +1.1 | 1.8 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b0523 | purE | +1.1 | 1.7 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b2024 | hisA | +1.1 | 1.3 | N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS) | compare |
| b1190 | dadX | +1.1 | 2.7 | alanine racemase (NCBI) | compare |
| b1970 | yedX | +1.1 | 2.5 | hypothetical protein (NCBI) | compare |
| b0729 | sucD | +1.1 | 2.3 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b0630 | lipB | +1.1 | 1.1 | protein of lipoate biosynthesis (VIMSS) | compare |
| b4660 | yhiL | +1.1 | 0.5 | no description | compare |
| b4128 | yjdK | +1.1 | 0.6 | hypothetical protein (NCBI) | compare |
| b2742 | nlpD | +1.1 | 3.7 | predicted outer membrane lipoprotein (NCBI) | compare |
| b4092 | phnP | +1.1 | 4.1 | carbon-phosphorus lyase complex accessory protein (NCBI) | compare |
| b0500 | ybbD | +1.1 | 0.4 | hypothetical protein (RefSeq) | compare |
| b3504 | yhiS | +1.1 | 0.5 | hypothetical protein (RefSeq) | compare |
| b1833 | yebS | +1.1 | 2.2 | conserved inner membrane protein (NCBI) | compare |
| b1395 | paaH | +1.1 | 3.4 | 3-hydroxybutyryl-CoA dehydrogenase (NCBI) | compare |
| b1502 | ydeQ | +1.1 | 1.8 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4508 | peaD | +1.1 | 2.3 | putative sensory transduction regulator (VIMSS) | compare |
| b1407 | ydbD | +1.1 | 4.5 | orf, hypothetical protein (VIMSS) | compare |
| b3673 | emrD | +1.1 | 4.6 | 2-module integral membrane pump; multidrug resistance (VIMSS) | compare |
| b3606 | yibK | +1.1 | 2.6 | predicted rRNA methylase (NCBI) | compare |
| b2792 | yqcC | +1.0 | 2.0 | hypothetical protein (NCBI) | compare |