| | gene | name | fitness | t score | description | |
|---|
| b1334 | fnr | +7.0 | 14.2 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b1256 | ompW | +7.0 | 48.7 | outer membrane protein W (NCBI) | compare |
| b3632 | rfaQ | +6.0 | 53.5 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0222 | lpcA | +6.0 | 15.9 | phosphoheptose isomerase (NCBI) | compare |
| b3625 | rfaY | +6.0 | 27.7 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1236 | galU | +5.8 | 27.3 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b3842 | rfaH | +5.6 | 24.8 | transcriptional activator RfaH (NCBI) | compare |
| b0688 | pgm | +5.4 | 16.6 | phosphoglucomutase (NCBI) | compare |
| b3620 | rfaF | +5.3 | 25.2 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b3619 | rfaD | +5.3 | 19.8 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b3052 | rfaE | +5.1 | 28.0 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3630 | rfaP | +5.0 | 39.1 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b3631 | rfaG | +5.0 | 42.6 | glucosyltransferase I (NCBI) | compare |
| b3621 | rfaC | +4.9 | 26.8 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3627 | rfaI | +4.8 | 33.8 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b1222 | narX | +4.8 | 8.0 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b0200 | gmhB | +4.8 | 6.4 | hypothetical protein (NCBI) | compare |
| b3628 | rfaB | +4.0 | 27.7 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b2512 | yfgL | +3.9 | 15.6 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b4177 | purA | +3.8 | 6.5 | adenylosuccinate synthetase (NCBI) | compare |
| b4239 | treC | +3.6 | 9.4 | trehalose-6-P hydrolase (NCBI) | compare |
| b4313 | fimE | +3.3 | 19.0 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b3867 | hemN | +3.1 | 21.6 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b0683 | fur | +3.1 | 2.9 | ferric uptake regulator (NCBI) | compare |
| b3398 | yrfF | +3.0 | 10.4 | predicted inner membrane protein (NCBI) | compare |
| b4178 | yjeB | +2.7 | 13.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0437 | clpP | +2.7 | 9.3 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b1084 | rne | +2.6 | 7.8 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b2808 | gcvA | +2.6 | 8.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3725 | pstB | +2.5 | 2.3 | phosphate transporter subunit (NCBI) | compare |
| b2215 | ompC | +2.5 | 10.3 | outer membrane porin protein C (NCBI) | compare |
| b2846 | yqeH | +2.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4695 | ykgT | +2.4 | 3.0 | no description | compare |
| b3860 | dsbA | +2.4 | 16.3 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b2343 | b2343 | +2.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1235 | rssB | +2.3 | 12.5 | response regulator of RpoS (NCBI) | compare |
| b1855 | lpxM | +2.3 | 7.9 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b2830 | nudH | +2.3 | 3.2 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b2814 | metZ | +2.3 | 2.2 | tRNA-Met (NCBI) | compare |
| b1476 | fdnI | +2.2 | 1.2 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b2572 | rseA | +2.2 | 5.4 | anti-sigma factor (NCBI) | compare |
| b3164 | pnp | +2.2 | 4.5 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b1836 | yebV | +2.2 | 4.7 | orf, hypothetical protein (VIMSS) | compare |
| b2684 | mprA | +2.2 | 8.3 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b3806 | cyaA | +2.2 | 7.2 | adenylate cyclase (NCBI) | compare |
| b0142 | folK | +2.2 | 0.7 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b1524 | yneH | +2.1 | 1.0 | predicted glutaminase (NCBI) | compare |
| b1151 | ymfO | +2.1 | 3.0 | e14 prophage; conserved protein (RefSeq) | compare |
| b0438 | clpX | +2.1 | 11.2 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b1279 | yciS | +2.1 | 1.6 | conserved inner membrane protein (NCBI) | compare |
| b0303 | ykgI | +2.1 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1159 | mcrA | +2.0 | 2.4 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b2285 | nuoE | +1.9 | 2.6 | NADH dehydrogenase subunit E (NCBI) | compare |
| b0740 | tolB | +1.9 | 7.0 | translocation protein TolB precursor (NCBI) | compare |
| b1540 | ydfH | +1.9 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3778 | rep | +1.9 | 12.8 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b4410 | ecnA | +1.9 | 1.7 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b2263 | yfbB | +1.8 | 1.8 | predicted peptidase (NCBI) | compare |
| b3387 | dam | +1.8 | 12.3 | DNA adenine methylase (NCBI) | compare |
| b1183 | umuD | +1.8 | 1.9 | DNA polymerase V, subunit D (NCBI) | compare |
| b1643 | ydhI | +1.8 | 2.8 | predicted inner membrane protein (NCBI) | compare |
| b2498 | upp | +1.8 | 5.0 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b2286 | nuoC | +1.8 | 5.2 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b2261 | menC | +1.7 | 4.4 | O-succinylbenzoate synthase (NCBI) | compare |
| b2262 | menB | +1.7 | 5.6 | naphthoate synthase (NCBI) | compare |
| b2421 | cysM | +1.7 | 3.6 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b0178 | hlpA | +1.7 | 3.0 | periplasmic chaperone (NCBI) | compare |
| b2276 | nuoN | +1.7 | 3.5 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b4593 | ymgI | +1.7 | 1.3 | hypothetical protein (RefSeq) | compare |
| b1818 | manY | +1.7 | 2.4 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b3290 | trkA | +1.7 | 3.7 | potassium transporter peripheral membrane component (NCBI) | compare |
| b0101 | yacG | +1.6 | 2.3 | zinc-binding protein (NCBI) | compare |
| b1644 | b1644 | +1.6 | 2.9 | putative membrane protein (VIMSS) | compare |
| b4025 | pgi | +1.6 | 8.1 | glucose-6-phosphate isomerase (NCBI) | compare |
| b1001 | yccE | +1.6 | 0.6 | hypothetical protein (NCBI) | compare |
| b4529 | ydbJ | +1.6 | 0.9 | hypothetical protein (NCBI) | compare |
| b4345 | mcrC | +1.6 | 1.9 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b1257 | yciE | +1.6 | 0.5 | hypothetical protein (NCBI) | compare |
| b2934 | cmtB | +1.6 | 1.1 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b0487 | cueR | +1.6 | 3.8 | DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) | compare |
| b1347 | ydaC | +1.6 | 0.5 | Rac prophage; predicted protein (NCBI) | compare |
| b2055 | wcaE | +1.6 | 0.6 | predicted glycosyl transferase (NCBI) | compare |
| b1185 | dsbB | +1.5 | 3.9 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1182 | hlyE | +1.5 | 0.7 | hemolysin E (VIMSS) | compare |
| b3555 | yiaG | +1.5 | 3.6 | predicted transcriptional regulator (NCBI) | compare |
| b1167 | ymgC | +1.5 | 0.4 | hypothetical protein (NCBI) | compare |
| b2682 | ygaZ | +1.5 | 4.2 | predicted transporter (NCBI) | compare |
| b1165 | ymgA | +1.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b1497 | b1497 | +1.5 | 0.7 | putative enzyme (VIMSS) | compare |
| b1499 | ydeO | +1.5 | 0.7 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b4546 | ypeB | +1.5 | 0.8 | hypothetical protein (NCBI) | compare |
| b1831 | proQ | +1.5 | 3.7 | putative solute/DNA competence effector (NCBI) | compare |
| b0460 | hha | +1.5 | 3.7 | modulator of gene expression, with H-NS (NCBI) | compare |
| b1551 | b1551 | +1.5 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b0296 | ykgM | +1.5 | 1.4 | 50S ribosomal protein L31 (NCBI) | compare |
| b1576 | ydfD | +1.5 | 0.6 | Qin prophage; predicted protein (NCBI) | compare |
| b4444 | rygA | +1.5 | 3.5 | unknown RNA (NCBI) | compare |
| b4535 | yniD | +1.5 | 1.2 | predicted protein (RefSeq) | compare |
| b1531 | marA | +1.5 | 2.3 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b1942 | fliJ | +1.5 | 1.1 | flagellar biosynthesis chaperone (NCBI) | compare |
| b2409 | yfeR | +1.5 | 3.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1865 | nudB | +1.5 | 1.8 | dATP pyrophosphohydrolase (NCBI) | compare |
| b4561 | insM | +1.5 | 3.4 | transposase (RefSeq) | compare |
| b2905 | gcvT | +1.5 | 4.5 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b1902 | yecI | +1.5 | 3.5 | predicted ferritin-like protein (NCBI) | compare |
| b3844 | fre | +1.5 | 5.5 | NAD(P)H-flavin reductase (NCBI) | compare |
| b0739 | tolA | +1.5 | 3.6 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b3658 | selC | +1.4 | 1.3 | tRNA-Sec (NCBI) | compare |
| b1363 | trkG | +1.4 | 0.9 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b0310 | ykgH | +1.4 | 2.3 | predicted inner membrane protein (NCBI) | compare |
| b2824 | ygdB | +1.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3405 | ompR | +1.4 | 3.5 | osmolarity response regulator (NCBI) | compare |
| b0903 | pflB | +1.4 | 8.1 | pyruvate formate lyase I (NCBI) | compare |
| b1111 | ycfQ | +1.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1351 | racC | +1.4 | 0.7 | Rac prophage; predicted protein (NCBI) | compare |
| b1664 | ydhQ | +1.4 | 4.3 | hypothetical protein (NCBI) | compare |
| b2567 | rnc | +1.4 | 0.9 | ribonuclease III (NCBI) | compare |
| b1950 | fliR | +1.4 | 3.3 | flagellar biosynthesis protein R (NCBI) | compare |
| b4675 | yoaJ | +1.4 | 2.9 | expressed protein (RefSeq) | compare |
| b2460 | eutQ | +1.4 | 3.2 | hypothetical protein (NCBI) | compare |
| b4451 | ryhB | +1.4 | 1.4 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b0234 | yafP | +1.4 | 2.6 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b3410 | yhgG | +1.4 | 4.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1427 | rimL | +1.4 | 2.4 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b1409 | ynbB | +1.4 | 0.9 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b0143 | pcnB | +1.4 | 4.7 | poly(A) polymerase I (VIMSS) | compare |
| b2579 | yfiD | +1.3 | 1.6 | pyruvate formate lyase subunit (NCBI) | compare |
| b0118 | acnB | +1.3 | 1.2 | aconitate hydratase (NCBI) | compare |
| b3121 | yhaC | +1.3 | 0.6 | hypothetical protein (NCBI) | compare |
| b2990 | hybG | +1.3 | 1.1 | hydrogenase 2 accessory protein (NCBI) | compare |
| b3764 | yifE | +1.3 | 2.6 | hypothetical protein (NCBI) | compare |
| b2617 | smpA | +1.3 | 2.7 | small membrane protein A (VIMSS) | compare |
| b1690 | ydiM | +1.3 | 2.4 | predicted transporter (NCBI) | compare |
| b0902 | pflA | +1.3 | 3.9 | pyruvate formate lyase activating enzyme 1 (NCBI) | compare |
| b1795 | yeaQ | +1.3 | 3.4 | conserved inner membrane protein (NCBI) | compare |
| b4443 | gcvB | +1.3 | 0.4 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b4246 | pyrL | +1.3 | 1.1 | pyrBI operon leader peptide (NCBI) | compare |
| b2012 | yeeD | +1.3 | 2.2 | hypothetical protein (NCBI) | compare |
| b0049 | apaH | +1.3 | 3.2 | diadenosinetetraphosphatase (NCBI) | compare |
| b4494 | arpB | +1.3 | 2.5 | no description | compare |
| b3609 | secB | +1.3 | 2.4 | export protein SecB (NCBI) | compare |
| b1085 | b1085 | +1.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2297 | pta | +1.3 | 0.7 | phosphate acetyltransferase (NCBI) | compare |
| b2847 | yqeI | +1.3 | 0.8 | predicted transcriptional regulator (NCBI) | compare |
| b1604 | ydgH | +1.3 | 2.2 | hypothetical protein (NCBI) | compare |
| b2528 | iscA | +1.3 | 1.1 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b1785 | yeaI | +1.3 | 2.9 | predicted diguanylate cyclase (NCBI) | compare |
| b0249 | ykfF | +1.3 | 1.3 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b3022 | b3022 | +1.3 | 4.4 | predicted cyanide hydratase (NCBI) | compare |
| b1129 | phoQ | +1.3 | 1.1 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b0450 | glnK | +1.3 | 2.2 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b2284 | nuoF | +1.3 | 4.2 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b0603 | ybdO | +1.3 | 0.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0738 | tolR | +1.3 | 3.4 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1696 | ydiP | +1.3 | 2.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2278 | nuoL | +1.3 | 5.9 | NADH dehydrogenase subunit L (NCBI) | compare |
| b0125 | hpt | +1.2 | 3.0 | hypoxanthine phosphoribosyltransferase (VIMSS) | compare |
| b1466 | narW | +1.2 | 3.5 | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) (NCBI) | compare |
| b1677 | lpp | +1.2 | 1.2 | murein lipoprotein (NCBI) | compare |
| b2623 | yfjH | +1.2 | 4.5 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b1443 | ydcV | +1.2 | 2.1 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b1833 | yebS | +1.2 | 3.3 | conserved inner membrane protein (NCBI) | compare |
| b0737 | tolQ | +1.2 | 2.7 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0279 | yagM | +1.2 | 0.7 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b0379 | yaiY | +1.2 | 2.6 | predicted inner membrane protein (NCBI) | compare |
| b2952 | yggT | +1.2 | 4.1 | predicted inner membrane protein (NCBI) | compare |
| b3442 | yhhZ | +1.2 | 0.5 | hypothetical protein (NCBI) | compare |
| b2264 | menD | +1.2 | 3.7 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (NCBI) | compare |
| b0774 | bioA | +1.2 | 2.8 | adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) | compare |
| b0439 | lon | +1.2 | 4.5 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b1143 | ymfI | +1.2 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2583 | yfiP | +1.2 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1854 | pykA | +1.2 | 4.2 | pyruvate kinase (NCBI) | compare |
| b2004 | yeeU | +1.2 | 1.4 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b4660 | yhiL | +1.2 | 0.6 | no description | compare |
| b1130 | phoP | +1.2 | 1.0 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b3087 | ygjR | +1.2 | 3.5 | predicted NAD(P)-binding dehydrogenase (RefSeq) | compare |
| b1496 | yddA | +1.2 | 5.5 | fused predicted multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component (NCBI) | compare |
| b1234 | rssA | +1.2 | 3.4 | conserved protein (RefSeq) | compare |
| b2510 | b2510 | +1.2 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2531 | iscR | +1.2 | 0.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3504 | yhiS | +1.2 | 0.5 | hypothetical protein (RefSeq) | compare |
| b4128 | yjdK | +1.2 | 0.7 | hypothetical protein (NCBI) | compare |
| b2724 | hycB | +1.1 | 2.6 | hydrogenase 3, Fe-S subunit (NCBI) | compare |
| b3930 | menA | +1.1 | 7.2 | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | compare |
| b3386 | rpe | +1.1 | 1.0 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b4172 | hfq | +1.1 | 0.9 | RNA-binding protein Hfq (NCBI) | compare |
| b4155 | yjeA | +1.1 | 0.6 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b0726 | sucA | +1.1 | 2.5 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b1040 | csgD | +1.1 | 1.4 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b2352 | yfdI | +1.1 | 0.7 | CPS-53 (KpLE1) prophage; predicted inner membrane protein (NCBI) | compare |
| b1048 | mdoG | +1.1 | 4.2 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b1264 | trpE | +1.1 | 2.7 | anthranilate synthase component I (NCBI) | compare |
| b0896 | dmsC | +1.1 | 4.1 | dimethyl sulfoxide reductase, anaerobic, subunit C (NCBI) | compare |
| b1811 | yoaH | +1.1 | 1.3 | hypothetical protein (NCBI) | compare |
| b1970 | yedX | +1.1 | 3.7 | hypothetical protein (NCBI) | compare |
| b1575 | dicB | +1.1 | 1.1 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b1428 | ydcK | +1.1 | 3.1 | predicted enzyme (NCBI) | compare |
| b1984 | asnW | +1.1 | 0.7 | tRNA-Asn (NCBI) | compare |
| b0500 | ybbD | +1.1 | 0.4 | hypothetical protein (RefSeq) | compare |