| | gene | name | fitness | t score | description | |
|---|
| b3613 | yibP | -2.8 | -6.4 | putative membrane protein (VIMSS) | compare |
| b3500 | gor | -2.7 | -1.8 | glutathione reductase (NCBI) | compare |
| b4699 | fnrS | -2.7 | -1.9 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b3021 | ygiT | -2.5 | -4.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0739 | tolA | -2.2 | -5.0 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b2830 | nudH | -2.2 | -1.5 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b1476 | fdnI | -2.1 | -1.8 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b0740 | tolB | -2.1 | -6.8 | translocation protein TolB precursor (NCBI) | compare |
| b0990 | cspG | -2.0 | -2.1 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4042 | dgkA | -1.9 | -2.2 | diacylglycerol kinase (NCBI) | compare |
| b1861 | ruvA | -1.9 | -2.1 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b0053 | surA | -1.8 | -6.7 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b3816 | corA | -1.8 | -10.4 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b0890 | ftsK | -1.8 | -5.3 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b4202 | rpsR | -1.7 | -1.6 | 30S ribosomal protein S18 (NCBI) | compare |
| b0200 | gmhB | -1.7 | -1.6 | hypothetical protein (NCBI) | compare |
| b0738 | tolR | -1.7 | -3.6 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1863 | ruvC | -1.7 | -2.7 | Holliday junction resolvase (NCBI) | compare |
| b3390 | aroK | -1.7 | -2.8 | shikimate kinase I (NCBI) | compare |
| b2894 | xerD | -1.6 | -1.0 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b3977 | tyrU | -1.6 | -1.3 | tRNA-Tyr (NCBI) | compare |
| b3162 | deaD | -1.6 | -5.0 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b3107 | yhaL | -1.6 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b0737 | tolQ | -1.5 | -3.8 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1936 | intG | -1.4 | -0.9 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1860 | ruvB | -1.4 | -1.2 | Holliday junction DNA helicase B (NCBI) | compare |
| b2699 | recA | -1.4 | -1.5 | recombinase A (NCBI) | compare |
| b2853 | ygeI | -1.4 | -0.8 | hypothetical protein (NCBI) | compare |
| b1730 | ydjO | -1.2 | -1.4 | predicted protein (RefSeq) | compare |
| b1493 | gadB | -1.2 | -1.4 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b3463 | ftsE | -1.2 | -0.8 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3863 | polA | -1.2 | -1.1 | DNA polymerase I (NCBI) | compare |
| b0630 | lipB | -1.2 | -1.1 | protein of lipoate biosynthesis (VIMSS) | compare |
| b2168 | fruK | -1.2 | -1.0 | 1-phosphofructokinase (NCBI) | compare |
| b4201 | priB | -1.2 | -2.8 | primosomal replication protein N (NCBI) | compare |
| b0051 | ksgA | -1.2 | -4.2 | dimethyladenosine transferase (NCBI) | compare |
| b1293 | sapB | -1.2 | -1.7 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1231 | tyrT | -1.2 | -1.2 | tRNA-Tyr (NCBI) | compare |
| b1848 | yebG | -1.1 | -2.0 | conserved protein regulated by LexA (NCBI) | compare |
| b3839 | tatC | -1.1 | -4.9 | TatABCE protein translocation system subunit (NCBI) | compare |
| b0741 | pal | -1.1 | -3.2 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b3811 | xerC | -1.1 | -1.8 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b4647 | mokA | -1.1 | -0.7 | no description | compare |
| b3979 | thrT | -1.1 | -0.5 | tRNA-Thr (NCBI) | compare |
| b4246 | pyrL | -1.1 | -2.6 | pyrBI operon leader peptide (NCBI) | compare |
| b1642 | slyA | -1.1 | -2.3 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b3405 | ompR | -1.1 | -4.4 | osmolarity response regulator (NCBI) | compare |
| b0161 | degP | -1.1 | -6.0 | serine endoprotease (protease Do), membrane-associated (NCBI) | compare |
| b1558 | cspF | -1.0 | -2.4 | Qin prophage; cold shock protein (NCBI) | compare |
| b1551 | b1551 | -1.0 | -0.6 | orf, hypothetical protein (VIMSS) | compare |
| b3426 | glpD | -1.0 | -2.2 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b0617 | citD | -1.0 | -2.3 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b1842 | holE | -1.0 | -1.6 | DNA polymerase III, theta subunit (NCBI) | compare |
| b3778 | rep | -1.0 | -6.0 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1185 | dsbB | -1.0 | -2.9 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b0088 | murD | -1.0 | -1.7 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b1850 | eda | -1.0 | -1.7 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b4414 | tff | -1.0 | -2.0 | unknown RNA (NCBI) | compare |
| b0149 | mrcB | -1.0 | -8.0 | penicillin-binding protein 1b (NCBI) | compare |
| b3261 | fis | -1.0 | -1.6 | DNA-binding protein Fis (NCBI) | compare |
| b0767 | ybhE | -1.0 | -3.7 | 6-phosphogluconolactonase (NCBI) | compare |
| b1292 | sapC | -1.0 | -1.7 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1368 | ynaA | -0.9 | -2.4 | Rac prophage; predicted tail protein (RefSeq) | compare |
| b3082 | ygjM | -0.9 | -1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0437 | clpP | -0.9 | -4.3 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b1506 | yneL | -0.9 | -1.5 | predicted transcriptional regulator (NCBI) | compare |
| b1109 | ndh | -0.9 | -3.2 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b2528 | iscA | -0.9 | -1.0 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b0439 | lon | -0.9 | -3.8 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b0912 | ihfB | -0.9 | -3.6 | integration host factor subunit beta (NCBI) | compare |
| b1192 | ldcA | -0.9 | -4.7 | L,D-carboxypeptidase A (NCBI) | compare |
| b4546 | ypeB | -0.9 | -1.1 | hypothetical protein (NCBI) | compare |
| b3636 | rpmG | -0.9 | -1.6 | 50S ribosomal protein L33 (NCBI) | compare |
| b1865 | nudB | -0.9 | -1.3 | dATP pyrophosphohydrolase (NCBI) | compare |
| b4172 | hfq | -0.9 | -0.5 | RNA-binding protein Hfq (NCBI) | compare |
| b4048 | yjbM | -0.8 | -1.2 | hypothetical protein (NCBI) | compare |
| b2935 | tktA | -0.8 | -1.6 | transketolase 1, thiamin-binding (NCBI) | compare |
| b3916 | pfkA | -0.8 | -2.1 | 6-phosphofructokinase (NCBI) | compare |
| b1286 | rnb | -0.8 | -1.9 | exoribonuclease II (NCBI) | compare |
| b1882 | cheY | -0.8 | -0.6 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b3169 | nusA | -0.8 | -2.0 | transcription elongation factor NusA (NCBI) | compare |
| b2276 | nuoN | -0.8 | -3.5 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b0364 | yaiS | -0.8 | -2.6 | orf, hypothetical protein (VIMSS) | compare |
| b2450 | yffS | -0.8 | -2.0 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b2498 | upp | -0.8 | -2.0 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b1482 | osmC | -0.8 | -1.6 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b3493 | pitA | -0.7 | -3.8 | phosphate transporter, low-affinity (NCBI) | compare |
| b2288 | nuoA | -0.7 | -2.0 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b3741 | gidA | -0.7 | -2.7 | glucose-inhibited division protein A (NCBI) | compare |
| b0726 | sucA | -0.7 | -2.5 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b1291 | sapD | -0.7 | -1.2 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3414 | gntY | -0.7 | -3.4 | predicted gluconate transport associated protein (NCBI) | compare |
| b0049 | apaH | -0.7 | -1.6 | diadenosinetetraphosphatase (NCBI) | compare |
| b0819 | ybiS | -0.7 | -5.2 | hypothetical protein (NCBI) | compare |
| b1382 | ynbE | -0.7 | -1.3 | predicted lipoprotein (NCBI) | compare |
| b1298 | ycjL | -0.7 | -2.3 | probable amidotransferase subunit (VIMSS) | compare |
| b0438 | clpX | -0.7 | -3.6 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b3728 | pstS | -0.7 | -1.8 | phosphate transporter subunit (NCBI) | compare |
| b3229 | sspA | -0.7 | -1.8 | stringent starvation protein A (NCBI) | compare |
| b1346 | ydaQ | -0.7 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1667 | ydhR | -0.7 | -2.1 | hypothetical protein (NCBI) | compare |
| b4426 | isrA | -0.7 | -1.4 | unknown RNA (NCBI) | compare |
| b1164 | ycgZ | -0.6 | -1.1 | hypothetical protein (NCBI) | compare |
| b1156 | tfaE | -0.6 | -2.9 | e14 prophage; predicted tail fiber assembly protein (NCBI) | compare |
| b1161 | ycgX | -0.6 | -0.8 | hypothetical protein (NCBI) | compare |
| b3781 | trxA | -0.6 | -2.3 | thioredoxin 1 (VIMSS) | compare |
| b0685 | ybfE | -0.6 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3388 | damX | -0.6 | -5.2 | hypothetical protein (NCBI) | compare |
| b1198 | dhaM | -0.6 | -2.7 | fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq) | compare |
| b0080 | fruR | -0.6 | -3.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0705 | ybfL | -0.6 | -0.4 | putative receptor protein (VIMSS) | compare |
| b1855 | lpxM | -0.6 | -2.2 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b0015 | dnaJ | -0.6 | -4.4 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b2284 | nuoF | -0.6 | -2.4 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b3387 | dam | -0.6 | -4.6 | DNA adenine methylase (NCBI) | compare |
| b0888 | trxB | -0.6 | -2.2 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b4179 | vacB | -0.6 | -2.7 | putative enzyme (VIMSS) | compare |
| b1613 | manA | -0.6 | -1.3 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b1400 | paaY | -0.6 | -1.7 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b4180 | rlmB | -0.6 | -3.8 | 23S rRNA (Gm2251)-methyltransferase (NCBI) | compare |
| b4655 | ythA | -0.6 | -0.8 | expressed protein (RefSeq) | compare |
| b3973 | birA | -0.6 | -2.1 | biotin--protein ligase (NCBI) | compare |
| b2808 | gcvA | -0.6 | -1.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3630 | rfaP | -0.6 | -3.9 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2569 | lepA | -0.6 | -2.3 | GTP-binding protein LepA (NCBI) | compare |
| b3026 | qseC | -0.6 | -2.2 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b0167 | glnD | -0.6 | -2.2 | PII uridylyl-transferase (NCBI) | compare |
| b2444 | yffM | -0.6 | -1.5 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b4319 | fimG | -0.6 | -3.2 | minor component of type 1 fimbriae (NCBI) | compare |
| b1242 | ychE | -0.6 | -2.1 | predicted inner membrane protein (NCBI) | compare |
| b1973 | yodA | -0.6 | -2.2 | conserved metal-binding protein (NCBI) | compare |
| b4178 | yjeB | -0.6 | -2.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3649 | rpoZ | -0.6 | -1.6 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b3792 | wzxE | -0.6 | -3.0 | O-antigen translocase (NCBI) | compare |
| b1058 | yceO | -0.5 | -0.3 | hypothetical protein (NCBI) | compare |
| b2356 | yfdM | -0.5 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2435 | amiA | -0.5 | -3.4 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b1563 | relE | -0.5 | -0.8 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b1591 | b1591 | -0.5 | -1.4 | putative oxidoreductase component (VIMSS) | compare |
| b4402 | yjjY | -0.5 | -0.4 | hypothetical protein (NCBI) | compare |
| b2330 | yfcB | -0.5 | -1.0 | putative adenine-specific methylase (VIMSS) | compare |
| b3935 | priA | -0.5 | -1.4 | primosome assembly protein PriA (NCBI) | compare |
| b3237 | argR | -0.5 | -2.3 | arginine repressor (NCBI) | compare |
| b0142 | folK | -0.5 | -0.4 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b2449 | yffR | -0.5 | -2.7 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b0678 | nagB | -0.5 | -2.3 | glucosamine-6-phosphate deaminase (NCBI) | compare |
| b2579 | yfiD | -0.5 | -1.1 | pyruvate formate lyase subunit (NCBI) | compare |
| b1526 | yneJ | -0.5 | -2.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2782 | chpA | -0.5 | -2.3 | toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease (NCBI) | compare |
| b2597 | yfiA | -0.5 | -1.1 | cold shock protein associated with 30S ribosomal subunit (NCBI) | compare |
| b4685 | yrbN | -0.5 | -1.3 | expressed protein (RefSeq) | compare |
| b2443 | yffL | -0.5 | -2.0 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b0720 | gltA | -0.5 | -2.7 | citrate synthase (NCBI) | compare |
| b4458 | oxyS | -0.5 | -0.9 | global regulatory RNA (NCBI) | compare |
| b4571 | wbbL | -0.5 | -1.6 | no description | compare |
| b3398 | yrfF | -0.5 | -1.6 | predicted inner membrane protein (NCBI) | compare |
| b1658 | purR | -0.5 | -2.3 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b4457 | csrC | -0.5 | -1.8 | regulatory RNA (NCBI) | compare |
| b2433 | b2433 | -0.5 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1920 | fliY | -0.5 | -1.0 | cystine transporter subunit (NCBI) | compare |
| b2017 | yefM | -0.5 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1839 | yebY | -0.5 | -1.7 | hypothetical protein (NCBI) | compare |
| b3611 | yibN | -0.5 | -2.4 | predicted rhodanese-related sulfurtransferase (NCBI) | compare |
| b3950 | frwB | -0.5 | -1.5 | predicted enzyme IIB component of PTS (NCBI) | compare |
| b1676 | pykF | -0.5 | -1.8 | pyruvate kinase (NCBI) | compare |
| b3652 | recG | -0.5 | -3.5 | ATP-dependent DNA helicase (NCBI) | compare |
| b1179 | ycgL | -0.5 | -1.4 | conserved protein (NCBI) | compare |
| b2937 | speB | -0.5 | -2.8 | agmatinase (NCBI) | compare |
| b3465 | yhhF | -0.5 | -2.8 | predicted methyltransferase (NCBI) | compare |
| b2105 | yohL | -0.5 | -2.1 | hypothetical protein (NCBI) | compare |
| b3210 | arcB | -0.5 | -2.9 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b2822 | recC | -0.5 | -2.0 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b2229 | b2229 | -0.5 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b4413 | sokC | -0.5 | -0.9 | regulatory antisense RNA (NCBI) | compare |
| b3094 | exuR | -0.5 | -2.1 | negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS) | compare |
| b2895 | fldB | -0.5 | -1.7 | flavodoxin 2 (NCBI) | compare |
| b1366 | ydaY | -0.5 | -2.0 | Rac prophage; predicted protein (RefSeq) | compare |
| b0082 | mraW | -0.5 | -1.7 | S-adenosyl-methyltransferase (NCBI) | compare |
| b0746 | valZ | -0.5 | -1.2 | tRNA-Val (NCBI) | compare |
| b2906 | visC | -0.5 | -2.5 | hypothetical protein (NCBI) | compare |
| b1279 | yciS | -0.5 | -0.7 | conserved inner membrane protein (NCBI) | compare |
| b1693 | aroD | -0.5 | -2.6 | 3-dehydroquinate dehydratase (NCBI) | compare |
| b1235 | rssB | -0.5 | -2.6 | response regulator of RpoS (NCBI) | compare |
| b2277 | nuoM | -0.5 | -2.2 | NADH dehydrogenase subunit M (NCBI) | compare |
| b0928 | aspC | -0.5 | -2.1 | aspartate aminotransferase, PLP-dependent (NCBI) | compare |
| b1001 | yccE | -0.5 | -0.3 | hypothetical protein (NCBI) | compare |
| b4436 | ryeC | -0.5 | -0.9 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b2318 | truA | -0.5 | -0.9 | tRNA pseudouridine synthase A (NCBI) | compare |
| b4451 | ryhB | -0.5 | -0.5 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b3198 | kdsC | -0.5 | -1.4 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b2582 | trxC | -0.5 | -1.7 | thioredoxin 2 (NCBI) | compare |
| b4093 | phnO | -0.4 | -2.6 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b0619 | citA | -0.4 | -3.0 | sensory histidine kinase in two-component regulatory system with citB (NCBI) | compare |
| b2113 | mrp | -0.4 | -2.6 | putative ATPase (VIMSS) | compare |
| b1579 | intQ | -0.4 | -1.2 | Qin prophage; predicted defective integrase (RefSeq) | compare |
| b1593 | b1593 | -0.4 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3609 | secB | -0.4 | -1.4 | export protein SecB (NCBI) | compare |
| b4240 | treB | -0.4 | -3.1 | fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component (NCBI) | compare |
| b4409 | blr | -0.4 | -2.4 | beta-lactam resistance membrane protein (NCBI) | compare |
| b3404 | envZ | -0.4 | -3.4 | osmolarity sensor protein (NCBI) | compare |