Experiment set61S72 for Escherichia coli BW25113

Compare to:

Laval1374

Group: phage
Media: LB_plus_SM_buffer + MOI 10
Culturing: Keio_ML9a, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 8/7/23
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride

Specific Phenotypes

For 20 genes in this experiment

For phage MOI 10 in Escherichia coli BW25113

For phage MOI 10 across organisms

SEED Subsystems

Subsystem #Specific
Colanic acid biosynthesis 9
Alkylphosphonate utilization 1
Capsular heptose biosynthesis 1
Iron acquisition in Vibrio 1
Peptidyl-prolyl cis-trans isomerase 1
Potassium homeostasis 1
Siderophore Aerobactin 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
GDP-L-fucose biosynthesis I (from GDP-D-mannose) 3 3 3
UDP-α-D-glucuronate biosynthesis (from UDP-glucose) 1 1 1
GDP-6-deoxy-D-talose biosynthesis 2 1 1
GDP-D-rhamnose biosynthesis 2 1 1
GDP-D-perosamine biosynthesis 2 1 1
UDP-α-D-xylose biosynthesis 2 1 1
colanic acid (Escherichia coli K12) biosynthesis 11 10 5
colanic acid building blocks biosynthesis 11 11 4
GDP-mycosamine biosynthesis 3 1 1
GDP-N-acetyl-α-D-perosamine biosynthesis 3 1 1
GDP-N-formyl-α-D-perosamine biosynthesis 3 1 1
superpathway of GDP-mannose-derived O-antigen building blocks biosynthesis 14 9 3
GDP-L-colitose biosynthesis 5 3 1
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis 6 5 1
teichuronic acid biosynthesis (B. subtilis 168) 9 2 1
UDP-sugars interconversion 9 2 1
superpathway of candicidin biosynthesis 11 4 1