| | gene | name | fitness | t score | description | |
|---|
| b1332 | ynaJ | +1.9 | 1.0 | predicted inner membrane protein (NCBI) | compare |
| b3181 | greA | +1.5 | 10.0 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b0145 | dksA | +1.2 | 3.8 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b3119 | tdcR | +1.1 | 2.5 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b0889 | lrp | +1.0 | 5.3 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b1942 | fliJ | +1.0 | 2.5 | flagellar biosynthesis chaperone (NCBI) | compare |
| b0059 | hepA | +0.9 | 8.4 | ATP-dependent helicase HepA (NCBI) | compare |
| b2829 | ptsP | +0.9 | 7.0 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1882 | cheY | +0.8 | 0.5 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b4416 | rybA | +0.8 | 2.0 | unknown RNA (NCBI) | compare |
| b1182 | hlyE | +0.8 | 0.5 | hemolysin E (VIMSS) | compare |
| b2946 | yggJ | +0.8 | 5.3 | orf, hypothetical protein (VIMSS) | compare |
| b0310 | ykgH | +0.7 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b4480 | hdfR | +0.7 | 3.7 | transcriptional regulator HdfR (NCBI) | compare |
| b1823 | cspC | +0.7 | 1.4 | stress protein, member of the CspA-family (NCBI) | compare |
| b1461 | ydcE | +0.7 | 2.2 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b3206 | npr | +0.7 | 3.1 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b0688 | pgm | +0.7 | 2.5 | phosphoglucomutase (NCBI) | compare |
| b2110 | yehC | +0.7 | 1.7 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b2058 | wcaB | +0.7 | 1.4 | predicted acyl transferase (NCBI) | compare |
| b4529 | ydbJ | +0.6 | 0.9 | hypothetical protein (NCBI) | compare |
| b0564 | appY | +0.6 | 1.1 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b2136 | yohD | +0.6 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0178 | hlpA | +0.6 | 2.5 | periplasmic chaperone (NCBI) | compare |
| b4000 | hupA | +0.6 | 4.1 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b1344 | ydaO | +0.6 | 2.4 | predicted C32 tRNA thiolase (NCBI) | compare |
| b0440 | hupB | +0.6 | 4.1 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b2904 | gcvH | +0.6 | 1.7 | glycine cleavage system protein H (NCBI) | compare |
| b4373 | rimI | +0.6 | 3.0 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b1013 | ycdC | +0.6 | 1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4436 | ryeC | +0.6 | 1.8 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b2617 | smpA | +0.6 | 3.0 | small membrane protein A (VIMSS) | compare |
| b2750 | cysC | +0.6 | 3.1 | adenylylsulfate kinase (NCBI) | compare |
| b1348 | lar | +0.6 | 1.1 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b2646 | ypjF | +0.6 | 2.7 | CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b0843 | ybjH | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b0937 | ssuE | +0.6 | 1.1 | NAD(P)H-dependent FMN reductase (NCBI) | compare |
| b4535 | yniD | +0.6 | 0.8 | predicted protein (RefSeq) | compare |
| b1540 | ydfH | +0.6 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1518 | lsrG | +0.5 | 1.2 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b4653 | yicT | +0.5 | 2.0 | no description | compare |
| b1362 | rzpR | +0.5 | 1.7 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b3644 | yicC | +0.5 | 3.3 | hypothetical protein (NCBI) | compare |
| b2903 | gcvP | +0.5 | 4.7 | glycine dehydrogenase (NCBI) | compare |
| b1062 | pyrC | +0.5 | 3.3 | dihydroorotase (NCBI) | compare |
| b0234 | yafP | +0.5 | 1.4 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b4239 | treC | +0.5 | 1.8 | trehalose-6-P hydrolase (NCBI) | compare |
| b4593 | ymgI | +0.5 | 0.4 | hypothetical protein (RefSeq) | compare |
| b0627 | tatE | +0.5 | 1.2 | twin arginine translocase protein E (NCBI) | compare |
| b0852 | rimK | +0.5 | 1.9 | ribosomal protein S6 modification protein (NCBI) | compare |
| b3764 | yifE | +0.5 | 3.6 | hypothetical protein (NCBI) | compare |
| b4520 | ymgF | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b3780 | rhlB | +0.5 | 4.5 | ATP-dependent RNA helicase (NCBI) | compare |
| b3629 | rfaS | +0.5 | 2.4 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b4461 | yfjD | +0.5 | 3.6 | predicted inner membrane protein (RefSeq) | compare |
| b1427 | rimL | +0.5 | 2.0 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b0705 | ybfL | +0.5 | 0.5 | putative receptor protein (VIMSS) | compare |
| b1575 | dicB | +0.5 | 1.3 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b2042 | galF | +0.5 | 3.7 | predicted subunit with GalU (NCBI) | compare |
| b1735 | chbR | +0.5 | 1.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1478 | adhP | +0.5 | 2.7 | alcohol dehydrogenase (VIMSS) | compare |
| b1661 | cfa | +0.5 | 2.2 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b4595 | yciY | +0.5 | 1.5 | hypothetical protein (RefSeq) | compare |
| b2911 | ssrS | +0.5 | 1.8 | 6S regulatory RNA (NCBI) | compare |
| b1333 | uspE | +0.5 | 1.7 | stress-induced protein (NCBI) | compare |
| b3977 | tyrU | +0.5 | 0.9 | tRNA-Tyr (NCBI) | compare |
| b1493 | gadB | +0.5 | 0.5 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b2376 | ypdI | +0.5 | 1.7 | predicted lipoprotein involved in colanic acid biosynthesis (NCBI) | compare |
| b0535 | fimZ | +0.5 | 2.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2111 | yehD | +0.5 | 1.5 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1726 | yniB | +0.5 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b0866 | ybjQ | +0.5 | 0.9 | hypothetical protein (NCBI) | compare |
| b1273 | yciN | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b0142 | folK | +0.5 | 0.4 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b2085 | b2085 | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1595 | ynfL | +0.4 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1217 | chaB | +0.4 | 0.7 | cation transport regulator (NCBI) | compare |
| b2934 | cmtB | +0.4 | 0.7 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1607 | ydgC | +0.4 | 0.9 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b1758 | b1758 | +0.4 | 0.9 | putative cytochrome oxidase (VIMSS) | compare |
| b2198 | ccmD | +0.4 | 2.1 | cytochrome c biogenesis protein (NCBI) | compare |
| b4215 | ytfI | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b2554 | yfhA | +0.4 | 3.2 | predicted DNA-binding response regulator in two-component system (NCBI) | compare |
| b2175 | spr | +0.4 | 2.3 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b2754 | ygbF | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4541 | yehK | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b4066 | yjcF | +0.4 | 0.4 | hypothetical protein (NCBI) | compare |
| b1698 | ydiR | +0.4 | 1.6 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b1151 | ymfO | +0.4 | 1.4 | e14 prophage; conserved protein (RefSeq) | compare |
| b1141 | ymfG | +0.4 | 2.1 | e14 prophage; predicted excisionase (NCBI) | compare |
| b4598 | yncL | +0.4 | 1.4 | hypothetical protein (RefSeq) | compare |
| b4521 | ycgI | +0.4 | 2.7 | hypothetical protein (NCBI) | compare |
| b1874 | cutC | +0.4 | 1.3 | copper homeostasis protein (NCBI) | compare |
| b3646 | yicG | +0.4 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b4641 | yoeH | +0.4 | 2.1 | no description | compare |
| b1454 | yncG | +0.4 | 1.1 | predicted enzyme (NCBI) | compare |
| b1556 | b1556 | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4325 | yjiC | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4260 | pepA | +0.4 | 3.4 | leucyl aminopeptidase (NCBI) | compare |
| b2259 | pmrD | +0.4 | 0.8 | polymyxin resistance protein B (VIMSS) | compare |
| b4345 | mcrC | +0.4 | 1.0 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b2123 | yehR | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0407 | yajC | +0.4 | 1.8 | preprotein translocase subunit YajC (NCBI) | compare |
| b4640 | yoeG | +0.4 | 1.3 | no description | compare |
| b2124 | yehS | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b1358 | ydaT | +0.4 | 0.6 | Rac prophage; predicted protein (NCBI) | compare |
| b0367 | tauC | +0.4 | 1.6 | taurine transporter subunit (NCBI) | compare |
| b1843 | yobB | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b1760 | ynjH | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b3806 | cyaA | +0.4 | 2.2 | adenylate cyclase (NCBI) | compare |
| b1161 | ycgX | +0.4 | 0.6 | hypothetical protein (NCBI) | compare |
| b3742 | mioC | +0.4 | 2.5 | flavodoxin (NCBI) | compare |
| b2555 | yfhG | +0.4 | 3.1 | hypothetical protein (NCBI) | compare |
| b1148 | ymfM | +0.4 | 1.4 | e14 prophage; predicted protein (NCBI) | compare |
| b4410 | ecnA | +0.4 | 1.1 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b0865 | ybjP | +0.4 | 1.2 | predicted lipoprotein (NCBI) | compare |
| b1520 | b1520 | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1526 | yneJ | +0.4 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1895 | yecG | +0.4 | 1.8 | universal stress protein (NCBI) | compare |
| b1722 | ydiY | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b2752 | cysD | +0.4 | 2.2 | sulfate adenylyltransferase subunit 2 (NCBI) | compare |
| b1670 | ydhU | +0.4 | 1.7 | predicted cytochrome (NCBI) | compare |
| b1618 | uidR | +0.4 | 1.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2811 | ygdK | +0.4 | 2.2 | predicted Fe-S metabolism protein (NCBI) | compare |
| b2823 | ppdC | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1918 | yecS | +0.4 | 1.5 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1853 | yebK | +0.4 | 0.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1296 | ycjJ | +0.4 | 1.3 | putative amino acid/amine transport protein (VIMSS) | compare |
| b3238 | yhcN | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1160 | elbA | +0.4 | 0.4 | hypothetical protein (NCBI) | compare |
| b3280 | yrdB | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b1739 | osmE | +0.3 | 1.1 | DNA-binding transcriptional activator (NCBI) | compare |
| b4441 | glmY | +0.3 | 1.1 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b0989 | cspH | +0.3 | 1.2 | stress protein, member of the CspA-family (NCBI) | compare |
| b2905 | gcvT | +0.3 | 2.5 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b4151 | frdD | +0.3 | 1.2 | fumarate reductase subunit D (NCBI) | compare |
| b2571 | rseB | +0.3 | 2.2 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b1235 | rssB | +0.3 | 2.3 | response regulator of RpoS (NCBI) | compare |
| b1793 | yoaF | +0.3 | 1.4 | conserved outer membrane protein (NCBI) | compare |
| b0131 | panD | +0.3 | 1.7 | aspartate 1-decarboxylase precursor (NCBI) | compare |
| b0548 | ninE | +0.3 | 1.8 | DLP12 prophage; conserved protein (NCBI) | compare |
| b3580 | lyxK | +0.3 | 2.6 | L-xylulose kinase (NCBI) | compare |
| b0468 | ybaN | +0.3 | 2.5 | conserved inner membrane protein (NCBI) | compare |
| b1006 | ycdG | +0.3 | 1.5 | putative transport protein (VIMSS) | compare |
| b0797 | rhlE | +0.3 | 2.0 | RNA helicase (NCBI) | compare |
| b4654 | yjdQ | +0.3 | 1.9 | no description | compare |
| b1837 | yebW | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b0647 | ybeT | +0.3 | 2.2 | conserved outer membrane protein (NCBI) | compare |
| b1066 | rimJ | +0.3 | 1.8 | ribosomal-protein-S5-alanine N-acetyltransferase (NCBI) | compare |
| b3912 | cpxR | +0.3 | 2.5 | DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) | compare |
| b1732 | katE | +0.3 | 1.6 | hydroperoxidase HPII(III) (catalase) (NCBI) | compare |
| b1878 | flhE | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b1730 | ydjO | +0.3 | 0.6 | predicted protein (RefSeq) | compare |
| b4001 | yjaH | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b3740 | gidB | +0.3 | 2.8 | glucose-inhibited division protein B (NCBI) | compare |
| b4631 | ykgQ | +0.3 | 0.7 | no description | compare |
| b2572 | rseA | +0.3 | 1.5 | anti-sigma factor (NCBI) | compare |
| b3260 | dusB | +0.3 | 1.1 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b2499 | purM | +0.3 | 1.9 | phosphoribosylaminoimidazole synthetase (NCBI) | compare |
| b2804 | fucU | +0.3 | 1.0 | L-fucose mutarotase (NCBI) | compare |
| b3102 | yqjG | +0.3 | 1.7 | predicted S-transferase (NCBI) | compare |
| b3642 | pyrE | +0.3 | 1.5 | orotate phosphoribosyltransferase (NCBI) | compare |
| b0975 | hyaD | +0.3 | 1.7 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b4603 | rseX | +0.3 | 0.4 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b2343 | b2343 | +0.3 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b1411 | ynbD | +0.3 | 1.8 | predicted phosphatase, inner membrane protein (NCBI) | compare |
| b3117 | tdcB | +0.3 | 2.6 | threonine dehydratase (NCBI) | compare |
| b2783 | chpR | +0.3 | 0.7 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b3662 | nepI | +0.3 | 2.6 | predicted transporter (RefSeq) | compare |
| b1752 | ydjZ | +0.3 | 1.3 | conserved inner membrane protein (NCBI) | compare |
| b2556 | yfhK | +0.3 | 2.3 | putative 2-component sensor protein (VIMSS) | compare |
| b4462 | ygaQ | +0.3 | 0.8 | hypothetical protein (RefSeq) | compare |
| b1604 | ydgH | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b0389 | yaiA | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b3562 | yiaA | +0.3 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b1134 | ymfB | +0.3 | 0.5 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b2064 | asmA | +0.3 | 2.2 | predicted assembly protein (NCBI) | compare |
| b1184 | umuC | +0.3 | 2.2 | DNA polymerase V subunit UmuC (NCBI) | compare |
| b0706 | ybfD | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b1150 | ymfR | +0.3 | 0.5 | e14 prophage; predicted protein (NCBI) | compare |
| b4702 | mgtL | +0.3 | 0.8 | regulatory leader peptide for mgtA (NCBI) | compare |
| b0488 | ybbJ | +0.3 | 1.9 | conserved inner membrane protein (RefSeq) | compare |
| b2586 | yfiM | +0.3 | 1.4 | predicted protein (RefSeq) | compare |
| b1085 | b1085 | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1940 | fliH | +0.3 | 2.2 | flagellar biosynthesis; export of flagellar proteins? (VIMSS) | compare |
| b1431 | ydcL | +0.3 | 0.8 | predicted lipoprotein (NCBI) | compare |
| b1754 | b1754 | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2079 | baeR | +0.3 | 1.6 | DNA-binding response regulator in two-component regulatory system with BaeS (NCBI) | compare |
| b4686 | yshB | +0.3 | 1.2 | expressed protein (RefSeq) | compare |
| b1527 | yneK | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b1329 | b1329 | +0.3 | 1.8 | putative transport periplasmic protein (VIMSS) | compare |
| b1338 | ydaJ | +0.3 | 1.5 | putative aminohydrolase (EC 3.5.1.14) (VIMSS) | compare |
| b2579 | yfiD | +0.3 | 1.0 | pyruvate formate lyase subunit (NCBI) | compare |
| b1113 | ycfS | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b2012 | yeeD | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b0547 | ybcN | +0.3 | 1.7 | DLP12 prophage; predicted protein (NCBI) | compare |
| b0624 | crcB | +0.3 | 0.8 | camphor resistance protein CrcB (NCBI) | compare |
| b4053 | alr | +0.3 | 2.4 | alanine racemase (NCBI) | compare |
| b4527 | b1354 | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1476 | fdnI | +0.3 | 0.4 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |