Experiment set5S88 for Pseudomonas segetis P6
Sodium Chloride 1100 mM
Group: stressMedia: LB_noSalt + Sodium Chloride (1100 mM)
Culturing: Pseudo_segetis_P6_ML4b, tube, Aerobic, at 30 (C), shaken=180 rpm
By: Marta Torres on 20-Dec-23
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract
Specific Phenotypes
For 4 genes in this experiment
For stress Sodium Chloride in Pseudomonas segetis P6
For stress Sodium Chloride across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Propionate-CoA to Succinate Module | 1 |
| Serine-glyoxylate cycle | 1 |
| TCA Cycle | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Citrate cycle (TCA cycle)
- Glyoxylate and dicarboxylate metabolism
- Reductive carboxylate cycle (CO2 fixation)
- Biosynthesis of phenylpropanoids
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| glyoxylate cycle | 6 | 5 | 2 |
| partial TCA cycle (obligate autotrophs) | 8 | 8 | 2 |
| nitrogen remobilization from senescing leaves | 8 | 6 | 2 |
| TCA cycle VII (acetate-producers) | 9 | 7 | 2 |
| TCA cycle V (2-oxoglutarate synthase) | 9 | 7 | 2 |
| TCA cycle VI (Helicobacter) | 9 | 7 | 2 |
| TCA cycle II (plants and fungi) | 9 | 6 | 2 |
| TCA cycle IV (2-oxoglutarate decarboxylase) | 9 | 6 | 2 |
| TCA cycle I (prokaryotic) | 10 | 8 | 2 |
| TCA cycle III (animals) | 10 | 6 | 2 |
| reductive TCA cycle I | 11 | 6 | 2 |
| superpathway of glyoxylate bypass and TCA | 12 | 10 | 2 |
| reductive TCA cycle II | 12 | 5 | 2 |
| superpathway of glyoxylate cycle and fatty acid degradation | 14 | 11 | 2 |
| mixed acid fermentation | 16 | 10 | 2 |
| methylaspartate cycle | 19 | 9 | 2 |
| superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | 22 | 16 | 2 |
| ethene biosynthesis V (engineered) | 25 | 18 | 2 |
| superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass | 26 | 21 | 2 |