Experiment set5S516 for Escherichia coli ECOR27

Compare to:

Bas78

200 most important genes:

  gene name fitness t score description  
NOLOHH_21380 cgsE -3.9 -1.7 curli production assembly/transport protein CsgE compare
NOLOHH_06550 xerC -3.7 -2.6 tyrosine recombinase XerC compare
NOLOHH_09845 greA -3.6 -2.2 transcription elongation factor GreA compare
NOLOHH_12805 rnfH -3.0 -2.9 RnfH family protein compare
NOLOHH_06530 corA -3.0 -4.6 magnesium/cobalt transporter CorA compare
NOLOHH_23315 sucA -2.9 -2.7 2-oxoglutarate dehydrogenase E1 component compare
NOLOHH_11775 yqeJ -2.6 -1.6 Uncharacterized protein YqeJ compare
NOLOHH_00940 -2.6 -2.2 RHS repeat protein compare
NOLOHH_07640 cysE -2.6 -1.6 serine O-acetyltransferase compare
NOLOHH_13300 iscA -2.5 -2.5 iron-sulfur cluster assembly protein IscA compare
NOLOHH_04525 miaA -2.5 -1.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
NOLOHH_00525 -2.4 -1.8 Tail tube terminator protein compare
NOLOHH_06675 wzxE -2.1 -4.9 lipid III flippase WzxE compare
NOLOHH_11365 rpiA -2.1 -2.4 ribose-5-phosphate isomerase RpiA compare
NOLOHH_20735 fadR -2.1 -1.9 fatty acid metabolism transcriptional regulator FadR compare
NOLOHH_13310 hscA -2.1 -3.0 Fe-S protein assembly chaperone HscA compare
NOLOHH_02845 aceE -2.0 -1.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
NOLOHH_09835 obgE -2.0 -1.5 GTPase ObgE compare
NOLOHH_14780 apbE -2.0 -2.9 FAD:protein FMN transferase ApbE compare
NOLOHH_06665 wzyE -2.0 -7.0 ECA oligosaccharide polymerase compare
NOLOHH_13055 rseA -1.9 -2.5 anti-sigma-E factor RseA compare
NOLOHH_24675 finO -1.8 -5.9 Fertility inhibition protein compare
NOLOHH_19485 paaB -1.8 -2.4 1,2-phenylacetyl-CoA epoxidase subunit B compare
NOLOHH_05815 metL -1.8 -9.5 bifunctional aspartate kinase/homoserine dehydrogenase II compare
NOLOHH_09590 argR -1.8 -5.2 transcriptional regulator ArgR compare
NOLOHH_24240 -1.8 -1.2 transglycosylase SLT domain-containing protein compare
NOLOHH_18060 rsxD -1.8 -3.8 electron transport complex subunit RsxD compare
NOLOHH_07575 rfaF -1.8 -1.2 ADP-heptose--LPS heptosyltransferase RfaF compare
NOLOHH_17075 nudL -1.8 -2.1 CoA pyrophosphatase compare
NOLOHH_14340 ubiX -1.8 -2.6 flavin prenyltransferase UbiX compare
NOLOHH_04165 treC -1.8 -4.7 alpha,alpha-phosphotrehalase compare
NOLOHH_14495 nuoI -1.7 -3.2 NADH-quinone oxidoreductase subunit NuoI compare
NOLOHH_14475 nuoE -1.7 -1.7 NADH-quinone oxidoreductase subunit NuoE compare
NOLOHH_24770 -1.7 -1.4 conjugal transfer protein TrbE compare
NOLOHH_23510 fur -1.7 -2.2 ferric iron uptake transcriptional regulator compare
NOLOHH_20690 ymgE -1.7 -2.4 UPF0410 protein YmgE compare
NOLOHH_17415 xthA -1.7 -2.6 exodeoxyribonuclease III compare
NOLOHH_04005 Leu_trna -1.7 -2.0 tRNA-Leu(caa) compare
NOLOHH_08495 yhhL -1.6 -2.0 DUF1145 domain-containing protein compare
NOLOHH_00445 -1.6 -3.3 peptidyl-arginine deiminase compare
NOLOHH_15505 parE -1.6 -2.1 type II toxin-antitoxin system RelE/ParE family toxin compare
NOLOHH_05490 hupA -1.6 -1.6 DNA-binding protein HU-alpha compare
NOLOHH_14470 nuoC -1.6 -5.1 NADH-quinone oxidoreductase subunit C/D compare
NOLOHH_14460 nuoA -1.6 -3.0 NADH-quinone oxidoreductase subunit NuoA compare
NOLOHH_19535 hslJ -1.5 -1.6 heat shock protein HslJ compare
NOLOHH_09610 zapG -1.5 -3.6 Z-ring associated protein ZapG compare
NOLOHH_23310 odhB -1.5 -1.4 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
NOLOHH_07545 waaO -1.5 -2.9 lipopolysaccharide 3-alpha-galactosyltransferase compare
NOLOHH_17810 pykF -1.5 -2.4 pyruvate kinase PykF compare
NOLOHH_13415 guaA -1.5 -2.6 glutamine-hydrolyzing GMP synthase compare
NOLOHH_05225 dgkA -1.5 -2.5 diacylglycerol kinase compare
NOLOHH_19620 gp18 -1.5 -1.2 phage minor tail protein L compare
NOLOHH_13865 crr -1.5 -1.2 PTS glucose transporter subunit IIA compare
NOLOHH_01270 clpP -1.5 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
NOLOHH_11495 xerD -1.4 -2.5 site-specific tyrosine recombinase XerD compare
NOLOHH_07630 secB -1.4 -2.0 protein-export chaperone SecB compare
NOLOHH_19385 ydcF -1.4 -1.6 Protein YdcF compare
NOLOHH_24820 -1.4 -1.3 Conjugal transfer protein TrbD compare
NOLOHH_09695 arcB -1.4 -4.7 aerobic respiration two-component sensor histidine kinase ArcB compare
NOLOHH_01935 rclC -1.4 -1.8 reactive chlorine species resistance protein RclC compare
NOLOHH_06920 mnmG -1.4 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
NOLOHH_15000 yeiW -1.4 -1.9 UPF0153 protein YeiW compare
NOLOHH_11230 tkt -1.4 -2.0 transketolase compare
NOLOHH_00620 -1.4 -1.2 Orf33, orf151, orf56, orf96, rus, orf45, orf8, orf127, and nmpC genes compare
NOLOHH_14505 nuoK -1.4 -2.0 NADH-quinone oxidoreductase subunit NuoK compare
NOLOHH_24695 vapB -1.4 -1.4 toxin-antitoxin system antitoxin VapB compare
NOLOHH_19875 dbpA -1.3 -2.0 ATP-dependent RNA helicase DbpA compare
NOLOHH_00240 -1.3 -1.7 Entry exclusion protein compare
NOLOHH_18050 rsxE -1.3 -2.0 electron transport complex subunit RsxE compare
NOLOHH_05695 sthA -1.3 -5.9 Si-specific NAD(P)(+) transhydrogenase compare
NOLOHH_14515 nuoM -1.3 -4.0 NADH-quinone oxidoreductase subunit M compare
NOLOHH_21130 yceD -1.3 -2.6 23S rRNA accumulation protein YceD compare
NOLOHH_18145 manA -1.3 -2.9 mannose-6-phosphate isomerase compare
NOLOHH_23995 fes -1.3 -3.3 enterobactin/ferric enterobactin esterase compare
NOLOHH_14305 truA -1.3 -3.9 tRNA pseudouridine(38-40) synthase TruA compare
NOLOHH_05830 metJ -1.3 -1.9 met regulon transcriptional regulator MetJ compare
NOLOHH_20895 nudJ -1.3 -1.4 phosphatase NudJ compare
NOLOHH_16355 yedK -1.3 -1.0 Abasic site processing protein YedK compare
NOLOHH_20205 osmB -1.3 -1.1 osmotically-inducible lipoprotein OsmB compare
NOLOHH_13075 lepA -1.2 -3.4 translation elongation factor 4 compare
NOLOHH_07125 -1.2 -2.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
NOLOHH_14810 yojO -1.2 -1.2 Uncharacterized protein YojO compare
NOLOHH_14480 nuoF -1.2 -4.6 NADH-quinone oxidoreductase subunit NuoF compare
NOLOHH_02690 dksA -1.2 -3.2 RNA polymerase-binding protein DksA compare
NOLOHH_16845 zwf -1.2 -1.9 glucose-6-phosphate dehydrogenase compare
NOLOHH_18885 ydeP -1.2 -1.7 acid resistance putative oxidoreductase YdeP compare
NOLOHH_21000 ldtC -1.2 -1.9 L,D-transpeptidase LdtC compare
NOLOHH_19750 -1.2 -2.5 antiterminator compare
NOLOHH_05965 pfkA -1.2 -4.0 6-phosphofructokinase compare
NOLOHH_00565 -1.2 -1.5 Lambda prophage-derived head-to-tail joining protein W compare
NOLOHH_11425 ubiI -1.2 -1.7 FAD-dependent 2-octaprenylphenol hydroxylase compare
NOLOHH_11490 fldB -1.2 -5.0 flavodoxin FldB compare
NOLOHH_09850 yhbY -1.2 -2.8 ribosome assembly RNA-binding protein YhbY compare
NOLOHH_03030 cra -1.1 -4.0 catabolite repressor/activator compare
NOLOHH_22695 ybhL -1.1 -2.0 Inhibitor of apoptosis-promoting Bax1 compare
NOLOHH_20905 hflD -1.1 -1.6 high frequency lysogenization protein HflD compare
NOLOHH_12545 recA -1.1 -1.6 recombinase RecA compare
NOLOHH_14485 nuoG -1.1 -3.9 NADH-quinone oxidoreductase subunit NuoG compare
NOLOHH_22960 -1.1 -1.3 Bacteriophage CII protein compare
NOLOHH_18730 marC -1.1 -1.6 NAAT family transporter MarC compare
NOLOHH_13115 shoB -1.1 -1.2 Small toxic protein ShoB compare
NOLOHH_07540 rfaP -1.1 -3.9 lipopolysaccharide core heptose(I) kinase RfaP compare
NOLOHH_24795 trbI -1.1 -1.2 type-F conjugative transfer system protein TrbI compare
NOLOHH_23145 galE -1.1 -3.6 UDP-glucose 4-epimerase GalE compare
NOLOHH_14510 nuoL -1.1 -4.7 NADH-quinone oxidoreductase subunit L compare
NOLOHH_20355 ompW -1.1 -1.6 outer membrane protein OmpW compare
NOLOHH_13035 srmB -1.1 -4.8 ATP-dependent RNA helicase SrmB compare
NOLOHH_23350 fimA -1.1 -1.3 type 1 fimbrial protein compare
NOLOHH_15920 eutP -1.1 -2.0 propanediol utilization protein compare
NOLOHH_18115 hdhA -1.1 -1.1 7-alpha-hydroxysteroid dehydrogenase compare
NOLOHH_19785 -1.0 -1.7 DUF977 domain-containing protein compare
NOLOHH_14465 nuoB -1.0 -4.2 NADH-quinone oxidoreductase subunit NuoB compare
NOLOHH_07535 rfaG -1.0 -3.4 Lipopolysaccharide core biosynthesis protein RfaG compare
NOLOHH_18070 rsxB -1.0 -1.4 electron transport complex subunit RsxB compare
NOLOHH_08270 hdeA -1.0 -3.3 acid-activated periplasmic chaperone HdeA compare
NOLOHH_08900 aroK -1.0 -1.5 shikimate kinase AroK compare
NOLOHH_21890 ssuE -1.0 -1.3 NADPH-dependent FMN reductase compare
NOLOHH_24465 -1.0 -1.6 Longus pilus structural subunit compare
NOLOHH_06385 fre -1.0 -6.1 NAD(P)H-flavin reductase compare
NOLOHH_00050 -1.0 -1.8 hypothetical protein compare
NOLOHH_13070 rseC -1.0 -2.7 SoxR-reducing system protein RseC compare
NOLOHH_23480 pgm -1.0 -2.3 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
NOLOHH_09810 sfsB -1.0 -1.8 DNA-binding transcriptional regulator SfsB compare
NOLOHH_06300 dsbA -1.0 -2.3 thiol:disulfide interchange protein DsbA compare
NOLOHH_14500 nuoJ -1.0 -2.7 NADH-quinone oxidoreductase subunit J compare
NOLOHH_03190 apaH -1.0 -3.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
NOLOHH_08720 glpD -1.0 -3.7 glycerol-3-phosphate dehydrogenase compare
NOLOHH_24025 hokE -1.0 -2.1 type I toxin-antitoxin system toxin HokE compare
NOLOHH_00385 -0.9 -1.1 hypothetical protein compare
NOLOHH_09905 nusA -0.9 -2.5 Transcription termination/antitermination protein NusA compare
NOLOHH_23320 sdhB -0.9 -2.6 succinate dehydrogenase iron-sulfur subunit SdhB compare
NOLOHH_14490 nuoH -0.9 -2.5 NADH-quinone oxidoreductase subunit NuoH compare
NOLOHH_20720 dadX -0.9 -2.0 catabolic alanine racemase DadX compare
NOLOHH_19570 sitB -0.9 -1.8 iron/manganese ABC transporter ATP-binding protein SitB compare
NOLOHH_20375 tonB -0.9 -2.5 TonB system transport protein TonB compare
NOLOHH_18805 lsrB -0.9 -2.2 autoinducer 2 ABC transporter substrate-binding protein LsrB compare
NOLOHH_07320 ivbL -0.9 -1.4 ilvB operon leader peptide IvbL compare
NOLOHH_24815 trbG -0.9 -1.0 conjugal transfer protein TrbG compare
NOLOHH_06220 typA -0.9 -5.8 ribosome-dependent GTPase TypA compare
NOLOHH_09940 pnp -0.9 -5.5 polyribonucleotide nucleotidyltransferase compare
NOLOHH_11185 speB -0.9 -4.1 agmatinase compare
NOLOHH_03170 surA -0.9 -2.6 peptidylprolyl isomerase SurA compare
NOLOHH_14125 emrY -0.9 -3.2 multidrug efflux MFS transporter permease subunit EmrY compare
NOLOHH_18065 rsxC -0.9 -3.0 electron transport complex subunit RsxC compare
NOLOHH_22570 glnQ -0.9 -1.5 glutamine ABC transporter ATP-binding protein GlnQ compare
NOLOHH_09355 aroE -0.9 -3.2 shikimate dehydrogenase compare
NOLOHH_04950 phnO -0.8 -1.5 aminoalkylphosphonate N-acetyltransferase compare
NOLOHH_21095 fabF -0.8 -1.7 beta-ketoacyl-ACP synthase II compare
NOLOHH_08215 gadB -0.8 -2.8 glutamate decarboxylase compare
NOLOHH_08775 -0.8 -3.4 NfuA family Fe-S biogenesis protein compare
NOLOHH_16080 -0.8 -0.9 hypothetical protein compare
NOLOHH_20870 bluR -0.8 -2.7 DNA-binding transcriptional repressor BluR compare
NOLOHH_17220 yeaK -0.8 -1.7 mischarged aminoacyl-tRNA deacylase compare
NOLOHH_01535 proC -0.8 -3.9 pyrroline-5-carboxylate reductase compare
NOLOHH_20865 bluF -0.8 -0.8 blue light-responsive regulator BluF compare
NOLOHH_22880 -0.8 -4.6 phage holin, lambda family compare
NOLOHH_23160 galM -0.8 -2.3 galactose-1-epimerase compare
NOLOHH_20455 hns -0.8 -2.1 DNA-binding transcriptional regulator H-NS compare
NOLOHH_17250 yeaE -0.8 -1.4 methylglyoxal reductase YeaE compare
NOLOHH_21710 hyaB -0.8 -2.4 Ni/Fe-hydrogenase large subunit compare
NOLOHH_22910 ninG -0.8 -1.9 Protein ninG compare
NOLOHH_21055 hinT -0.8 -1.1 purine nucleoside phosphoramidase compare
NOLOHH_02290 yafU -0.8 -1.8 Putative inner membrane protein YafU compare
NOLOHH_08800 feoC -0.8 -2.4 [Fe-S]-dependent transcriptional repressor FeoC compare
NOLOHH_20740 nhaB -0.8 -2.6 Na(+)/H(+) antiporter NhaB compare
NOLOHH_05230 plsB -0.8 -1.0 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
NOLOHH_17125 rnd -0.8 -1.8 ribonuclease D compare
NOLOHH_09955 deaD -0.8 -2.1 ATP-dependent RNA helicase DeaD compare
NOLOHH_17535 hxpB -0.8 -2.3 hexitol phosphatase HxpB compare
NOLOHH_01960 ykgR -0.8 -0.8 Uncharacterized membrane protein YkgR compare
NOLOHH_07560 rfaB -0.8 -2.4 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
NOLOHH_23305 sucC -0.8 -2.2 ADP-forming succinate--CoA ligase subunit beta compare
NOLOHH_22050 serC -0.8 -4.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
NOLOHH_16385 fliS -0.8 -2.0 flagellar export chaperone FliS compare
NOLOHH_15575 ibsA -0.8 -3.2 Small toxic protein IbsA compare
NOLOHH_16870 yebF -0.8 -1.0 Protein YebF compare
NOLOHH_06590 cyaA -0.8 -3.8 class I adenylate cyclase compare
NOLOHH_08375 pitA -0.8 -2.7 inorganic phosphate transporter PitA compare
NOLOHH_10285 yqiM -0.8 -2.2 Protein YqiM compare
NOLOHH_20965 cobB -0.7 -2.2 NAD-dependent protein deacylase compare
NOLOHH_04505 hflC -0.7 -1.5 protease modulator HflC compare
NOLOHH_17835 -0.7 -0.8 Ferredoxin compare
NOLOHH_06915 mioC -0.7 -3.9 FMN-binding protein MioC compare
NOLOHH_14835 napG -0.7 -2.8 ferredoxin-type protein NapG compare
NOLOHH_13185 glyA -0.7 -2.3 serine hydroxymethyltransferase compare
NOLOHH_18985 -0.7 -1.6 LysR family transcriptional regulator compare
NOLOHH_07435 spoT -0.7 -1.3 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
NOLOHH_00315 -0.7 -1.8 Cnjugal protein Pilx7 compare
NOLOHH_07565 rfaL -0.7 -3.0 O-antigen ligase RfaL compare
NOLOHH_02300 yafT -0.7 -2.6 Uncharacterized lipoprotein YafT compare
NOLOHH_18800 lsrF -0.7 -1.4 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase compare
NOLOHH_18930 gadC -0.7 -1.7 acid resistance gamma-aminobutyrate antiporter GadC compare
NOLOHH_16880 -0.7 -1.3 hypothetical protein compare
NOLOHH_03185 apaG -0.7 -2.5 Co2+/Mg2+ efflux protein ApaG compare
NOLOHH_03360 nhaA -0.7 -1.9 Na+/H+ antiporter NhaA compare
NOLOHH_17495 celF -0.7 -2.4 6-phospho-beta-glucosidase compare
NOLOHH_16010 pduA -0.7 -1.9 propanediol utilization microcompartment protein PduA compare
NOLOHH_12505 srlR -0.7 -2.7 glucitol operon DNA-binding transcriptional repressor SrlR compare
NOLOHH_00360 -0.7 -3.2 relaxase/mobilization nuclease compare
NOLOHH_23300 sucD -0.7 -2.4 succinate--CoA ligase subunit alpha compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR27 in phage experiments

For phage Phage across organisms