Experiment set5S510 for Escherichia coli ECOR27
Bas49
Group: phageMedia: LB_plus_SM_buffer + Phage (10 MOI)
Culturing: Ecoli_ECOR27_ML1, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 11/21/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride
Specific Phenotypes
For 10 genes in this experiment
For phage Phage in Escherichia coli ECOR27
For phage Phage across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Glycolysis / Gluconeogenesis
- Fructose and mannose metabolism
- Galactose metabolism
- Ascorbate and aldarate metabolism
- Glycine, serine and threonine metabolism
- Cysteine metabolism
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
- Aminosugars metabolism
- Lipopolysaccharide biosynthesis
- Folate biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-serine degradation | 3 | 3 | 3 |
| L-tryptophan degradation II (via pyruvate) | 3 | 3 | 2 |
| D-serine degradation | 3 | 3 | 2 |
| L-cysteine degradation II | 3 | 2 | 2 |
| guanine and guanosine salvage II | 2 | 2 | 1 |
| adenine and adenosine salvage I | 2 | 2 | 1 |
| guanine and guanosine salvage I | 2 | 2 | 1 |
| adenine and adenosine salvage II | 2 | 2 | 1 |
| glycine betaine degradation III | 7 | 4 | 3 |
| felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis | 5 | 2 | 2 |
| glycine betaine degradation I | 8 | 4 | 3 |
| superpathway of guanine and guanosine salvage | 3 | 3 | 1 |
| glycine degradation | 3 | 3 | 1 |
| adenine salvage | 3 | 3 | 1 |
| L-methionine biosynthesis II | 6 | 5 | 2 |
| L-mimosine degradation | 8 | 4 | 2 |
| glutathione-mediated detoxification I | 8 | 3 | 2 |
| superpathway of purine nucleotide salvage | 14 | 13 | 2 |
| glyphosate degradation III | 7 | 4 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis II | 15 | 13 | 2 |
| (aminomethyl)phosphonate degradation | 8 | 8 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 17 | 3 |