Experiment set5S266 for Pseudomonas sp. RS175

Compare to:

Glycocyamine 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFR28_00098 -4.1 -4.0 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_03388 -4.0 -5.5 Quinolinate synthase A compare
PFR28_04071 -4.0 -2.0 Multifunctional CCA protein compare
PFR28_03844 -3.9 -3.8 Thiamine-phosphate synthase compare
PFR28_02763 -3.9 -1.9 hypothetical protein compare
PFR28_03653 -3.9 -3.5 Molybdopterin-synthase adenylyltransferase compare
PFR28_02403 -3.7 -2.5 Na(+)/H(+) antiporter subunit C1 compare
PFR28_03631 -3.7 -1.8 hypothetical protein compare
PFR28_04252 -3.5 -8.2 Thiazole synthase compare
PFR28_03344 -3.2 -1.6 Ion-translocating oxidoreductase complex subunit A compare
PFR28_02486 -3.1 -2.1 hypothetical protein compare
PFR28_05091 -3.0 -14.4 Phosphomethylpyrimidine synthase compare
PFR28_04245 -2.8 -3.3 Homoserine O-succinyltransferase compare
PFR28_04246 -2.8 -3.8 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_03843 -2.7 -6.4 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_00188 -2.7 -2.6 Histidinol-phosphate aminotransferase compare
PFR28_03012 -2.6 -5.3 Phosphate acyltransferase compare
PFR28_05125 -2.4 -1.7 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_04834 -2.4 -4.6 L-threonine dehydratase biosynthetic IlvA compare
PFR28_01376 -2.4 -1.6 hypothetical protein compare
PFR28_03666 -2.3 -1.6 hypothetical protein compare
PFR28_00126 -2.3 -3.1 Dipeptide transport system permease protein DppC compare
PFR28_00331 -2.2 -3.7 Tyrosine recombinase XerD compare
PFR28_00689 -2.2 -12.5 L-aspartate oxidase compare
PFR28_00194 -2.2 -3.9 Bifunctional enzyme CysN/CysC compare
PFR28_01879 -2.2 -1.5 hypothetical protein compare
PFR28_00780 -2.1 -1.4 hypothetical protein compare
PFR28_00837 -2.1 -6.3 hypothetical protein compare
PFR28_02810 -2.0 -4.5 O-succinylhomoserine sulfhydrylase compare
PFR28_01319 -2.0 -6.5 1,4-alpha-glucan branching enzyme GlgB compare
PFR28_02872 -2.0 -1.4 hypothetical protein compare
PFR28_00089 -2.0 -1.2 Transcription termination/antitermination protein NusA compare
PFR28_00193 -2.0 -5.6 Sulfate adenylyltransferase subunit 2 compare
PFR28_05000 -2.0 -2.5 Cell division protein FtsN compare
PFR28_00541 -1.9 -2.9 hypothetical protein compare
PFR28_02125 -1.9 -4.0 Nodulation protein D 2 compare
PFR28_01142 -1.9 -2.9 Transaldolase compare
PFR28_00186 -1.9 -1.3 ATP phosphoribosyltransferase compare
PFR28_03455 -1.9 -2.2 Pyruvate kinase II compare
PFR28_05036 -1.9 -1.3 Acyl carrier protein compare
PFR28_05015 -1.9 -1.8 Glutamate synthase [NADPH] large chain compare
PFR28_01362 -1.9 -1.2 hypothetical protein compare
PFR28_03724 -1.9 -3.9 Glucose-6-phosphate isomerase compare
PFR28_00180 -1.9 -4.4 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_00960 -1.9 -4.1 hypothetical protein compare
PFR28_04985 -1.9 -1.3 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_00460 -1.8 -2.9 hypothetical protein compare
PFR28_03363 -1.8 -3.8 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_04930 -1.8 -1.2 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_05016 -1.8 -1.8 Glutamate synthase [NADPH] small chain compare
PFR28_01777 -1.8 -1.4 putative trans-3-hydroxy-L-proline dehydratase compare
PFR28_04986 -1.8 -1.2 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_03714 -1.8 -7.4 RNA polymerase-binding transcription factor DksA compare
PFR28_01749 -1.8 -2.2 hypothetical protein compare
PFR28_04103 -1.8 -2.1 Biotin synthase compare
PFR28_04832 -1.7 -2.9 putative phosphatase compare
PFR28_04620 -1.7 -2.8 Zinc uptake regulation protein compare
PFR28_00159 -1.7 -1.2 hypothetical protein compare
PFR28_03571 -1.7 -2.5 Protein AaeX compare
PFR28_03697 -1.7 -1.6 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_04929 -1.7 -1.1 Histidine biosynthesis bifunctional protein HisB compare
PFR28_00184 -1.6 -2.4 hypothetical protein compare
PFR28_04278 -1.6 -1.9 Dihydroxy-acid dehydratase compare
PFR28_02838 -1.6 -6.4 Aromatic-amino-acid aminotransferase compare
PFR28_00181 -1.6 -6.4 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_00966 -1.6 -2.4 HTH-type transcriptional regulator CysB compare
PFR28_04418 -1.6 -1.1 Exodeoxyribonuclease compare
PFR28_02608 -1.6 -1.5 DNA translocase FtsK compare
PFR28_04713 -1.6 -2.9 putative protein YqjD compare
PFR28_02719 -1.6 -1.5 Integration host factor subunit alpha compare
PFR28_04521 -1.6 -2.7 HTH-type transcriptional regulator HexR compare
PFR28_00292 -1.5 -1.8 Protein IscX compare
PFR28_01592 -1.5 -2.3 hypothetical protein compare
PFR28_00179 -1.5 -5.1 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_03827 -1.5 -2.7 HTH-type transcriptional regulator LrpC compare
PFR28_01366 -1.5 -1.8 Sulfite reductase [ferredoxin] compare
PFR28_00356 -1.5 -6.2 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_04782 -1.5 -5.1 hypothetical protein compare
PFR28_04473 -1.5 -1.5 DNA-binding protein HU-beta compare
PFR28_00305 -1.5 -3.2 2-isopropylmalate synthase compare
PFR28_04120 -1.5 -1.1 hypothetical protein compare
PFR28_00678 -1.5 -2.4 hypothetical protein compare
PFR28_03310 -1.4 -2.5 Peptidyl-tRNA hydrolase ArfB compare
PFR28_03681 -1.4 -3.6 [Ribosomal protein S18]-alanine N-acetyltransferase compare
PFR28_02021 -1.4 -1.4 FMN reductase (NADH) RutF compare
PFR28_04425 -1.4 -5.9 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_02507 -1.4 -1.6 Phosphoglycolate phosphatase compare
PFR28_04518 -1.4 -5.4 2-oxoglutarate carboxylase small subunit compare
PFR28_00164 -1.4 -2.4 hypothetical protein compare
PFR28_04519 -1.4 -4.3 HTH-type transcriptional activator CmpR compare
PFR28_01365 -1.4 -0.9 hypothetical protein compare
PFR28_04933 -1.4 -0.9 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_00182 -1.4 -5.4 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_00296 -1.4 -2.3 Cytoskeleton protein RodZ compare
PFR28_00787 -1.3 -1.8 hypothetical protein compare
PFR28_02889 -1.3 -2.3 hypothetical protein compare
PFR28_04765 -1.3 -3.1 Sulfate/thiosulfate import ATP-binding protein CysA compare
PFR28_03414 -1.3 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_04232 -1.3 -2.7 Glutathione synthetase compare
PFR28_05046 -1.3 -2.4 hypothetical protein compare
PFR28_01139 -1.3 -7.4 Intermembrane phospholipid transport system lipoprotein MlaA compare
PFR28_00498 -1.3 -1.2 Cold shock protein CapB compare
PFR28_05097 -1.3 -2.2 hypothetical protein compare
PFR28_01794 -1.3 -2.2 putative tautomerase compare
PFR28_05042 -1.2 -1.8 hypothetical protein compare
PFR28_03209 -1.2 -2.3 Corrinoid adenosyltransferase compare
PFR28_01691 -1.2 -2.4 hypothetical protein compare
PFR28_04623 -1.2 -3.5 hypothetical protein compare
PFR28_05105 -1.2 -0.8 Phosphoserine phosphatase SerB2 compare
PFR28_04824 -1.2 -4.6 Cadmium-transporting ATPase compare
PFR28_02975 -1.2 -1.9 hypothetical protein compare
PFR28_04833 -1.2 -2.5 hypothetical protein compare
PFR28_04924 -1.2 -1.7 putative Fe(2+)-trafficking protein compare
PFR28_02824 -1.1 -0.8 3-isopropylmalate dehydratase large subunit compare
PFR28_04102 -1.1 -4.1 8-amino-7-oxononanoate synthase compare
PFR28_00573 -1.1 -5.3 Glucose-6-phosphate 1-dehydrogenase compare
PFR28_04830 -1.1 -6.5 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_02894 -1.1 -2.6 putative oxidoreductase compare
PFR28_04100 -1.1 -3.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_03507 -1.1 -2.1 Protein YrdA compare
PFR28_02821 -1.1 -0.8 3-isopropylmalate dehydrogenase compare
PFR28_03191 -1.1 -0.9 hypothetical protein compare
PFR28_02241 -1.1 -1.4 Copper-binding lipoprotein NosL compare
PFR28_00709 -1.1 -2.4 hypothetical protein compare
PFR28_00941 -1.1 -0.9 Potassium-transporting ATPase KdpC subunit compare
PFR28_03698 -1.1 -1.4 Acetolactate synthase isozyme 3 small subunit compare
PFR28_04607 -1.1 -1.3 Organic hydroperoxide resistance protein OhrB compare
PFR28_03634 -1.1 -2.3 hypothetical protein compare
PFR28_02570 -1.1 -2.3 HTH-type transcriptional regulator CdhR compare
PFR28_01969 -1.1 -2.1 hypothetical protein compare
PFR28_00006 -1.1 -1.9 RecBCD enzyme subunit RecC compare
PFR28_05033 -1.1 -2.8 hypothetical protein compare
PFR28_02131 -1.1 -1.5 Response regulator protein TmoT compare
PFR28_03806 -1.1 -1.3 Protein/nucleic acid deglycase 3 compare
PFR28_05104 -1.0 -2.0 hypothetical protein compare
PFR28_03404 -1.0 -2.3 7-carboxy-7-deazaguanine synthase compare
PFR28_00622 -1.0 -1.3 Beta-ketoadipyl-CoA thiolase compare
PFR28_00909 -1.0 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFR28_01435 -1.0 -1.1 Response regulator UvrY compare
PFR28_02356 -1.0 -2.8 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
PFR28_04584 -1.0 -1.5 putative chromosome-partitioning protein ParB compare
PFR28_00169 -1.0 -2.9 Phosphocarrier protein NPr compare
PFR28_03900 -1.0 -1.1 hypothetical protein compare
PFR28_00688 -1.0 -0.9 hypothetical protein compare
PFR28_02369 -1.0 -1.9 hypothetical protein compare
PFR28_02008 -1.0 -1.1 hypothetical protein compare
PFR28_01876 -1.0 -0.7 hypothetical protein compare
PFR28_02603 -1.0 -1.0 Siroheme synthase compare
PFR28_03736 -1.0 -1.9 hypothetical protein compare
PFR28_03875 -1.0 -0.9 hypothetical protein compare
PFR28_00855 -1.0 -3.6 hypothetical protein compare
PFR28_02823 -1.0 -0.6 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_04208 -1.0 -2.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_03308 -1.0 -1.7 hypothetical protein compare
PFR28_02841 -1.0 -0.8 hypothetical protein compare
PFR28_02061 -1.0 -2.9 Beta-ketothiolase BktB compare
PFR28_04517 -1.0 -4.4 Oxaloacetate decarboxylase alpha chain compare
PFR28_04842 -0.9 -1.9 D-3-phosphoglycerate dehydrogenase compare
PFR28_01943 -0.9 -2.3 Putative isomerase YbhH compare
PFR28_00271 -0.9 -1.9 hypothetical protein compare
PFR28_03266 -0.9 -1.6 hypothetical protein compare
PFR28_00756 -0.9 -1.4 ATP-dependent RNA helicase RhlE compare
PFR28_04903 -0.9 -2.1 hypothetical protein compare
PFR28_03957 -0.9 -4.2 hypothetical protein compare
PFR28_04941 -0.9 -1.6 Protein-export protein SecB compare
PFR28_03223 -0.9 -3.1 GTP pyrophosphokinase compare
PFR28_02136 -0.9 -1.7 hypothetical protein compare
PFR28_01872 -0.9 -3.4 Protein FecR compare
PFR28_04154 -0.9 -1.6 HTH-type transcriptional regulator CdhR compare
PFR28_03837 -0.9 -3.2 Leucine-responsive regulatory protein compare
PFR28_03596 -0.9 -1.3 Transcriptional regulator MraZ compare
PFR28_03322 -0.9 -1.7 hypothetical protein compare
PFR28_03533 -0.9 -1.2 DNA-binding protein HU 1 compare
PFR28_04380 -0.9 -1.0 Transcriptional regulator SutA compare
PFR28_04712 -0.9 -1.0 Dodecin compare
PFR28_03573 -0.9 -3.9 Toluene efflux pump outer membrane protein TtgI compare
PFR28_04831 -0.9 -0.6 RNA pyrophosphohydrolase compare
PFR28_03570 -0.9 -1.9 p-hydroxybenzoic acid efflux pump subunit AaeA compare
PFR28_04089 -0.9 -0.7 PqqA binding protein compare
PFR28_02075 -0.9 -2.7 Isoquinoline 1-oxidoreductase subunit alpha compare
PFR28_01952 -0.9 -2.1 hypothetical protein compare
PFR28_03412 -0.9 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_03413 -0.9 -1.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_02510 -0.9 -0.9 Chemotaxis protein CheY compare
PFR28_05201 -0.9 -1.3 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_02111 -0.9 -1.9 hypothetical protein compare
PFR28_03282 -0.9 -1.8 Arginine N-succinyltransferase subunit alpha compare
PFR28_01730 -0.9 -2.4 hypothetical protein compare
PFR28_01145 -0.9 -2.8 hypothetical protein compare
PFR28_03218 -0.8 -1.1 Phosphoribosylglycinamide formyltransferase compare
PFR28_03846 -0.8 -2.7 hypothetical protein compare
PFR28_01092 -0.8 -0.6 Cbb3-type cytochrome c oxidase subunit CcoP1 compare
PFR28_03278 -0.8 -2.1 hypothetical protein compare
PFR28_03865 -0.8 -2.4 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_01871 -0.8 -1.9 putative RNA polymerase sigma factor FecI compare
PFR28_02093 -0.8 -2.8 Vitamin B12 transport ATP-binding protein BacA compare
PFR28_02145 -0.8 -7.1 Glycogen synthase compare
PFR28_00690 -0.8 -2.2 RNA polymerase sigma-H factor compare
PFR28_03229 -0.8 -1.9 hypothetical protein compare
PFR28_02289 -0.8 -1.1 HTH-type transcriptional repressor NicS compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. RS175 in carbon source experiments

For carbon source Glycocyamine across organisms