Experiment set5S264 for Pseudomonas sp. RS175

Compare to:

L-Carnitine hydrochloride 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFR28_03388 -5.0 -6.0 Quinolinate synthase A compare
PFR28_00098 -4.9 -5.8 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_04071 -4.5 -2.1 Multifunctional CCA protein compare
PFR28_05244 -4.3 -14.4 Copper-exporting P-type ATPase compare
PFR28_04147 -4.2 -14.3 putative N-methylproline demethylase compare
PFR28_04144 -4.1 -5.6 hypothetical protein compare
PFR28_04145 -4.1 -9.5 Protein FixB compare
PFR28_04782 -3.9 -17.2 hypothetical protein compare
PFR28_04146 -3.8 -12.4 hypothetical protein compare
PFR28_04246 -3.5 -4.8 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_03714 -3.5 -12.5 RNA polymerase-binding transcription factor DksA compare
PFR28_04245 -3.4 -5.2 Homoserine O-succinyltransferase compare
PFR28_00188 -3.4 -4.0 Histidinol-phosphate aminotransferase compare
PFR28_04149 -3.4 -11.0 hypothetical protein compare
PFR28_02719 -3.3 -3.8 Integration host factor subunit alpha compare
PFR28_04834 -3.3 -5.1 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04139 -3.2 -14.9 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component compare
PFR28_04158 -3.2 -13.2 L-carnitine dehydrogenase conserved
PFR28_04133 -3.2 -9.9 Sarcosine oxidase subunit delta compare
PFR28_02810 -3.1 -6.0 O-succinylhomoserine sulfhydrylase compare
PFR28_04132 -3.1 -22.6 Sarcosine oxidase subunit alpha compare
PFR28_04134 -3.1 -13.9 Sarcosine oxidase subunit beta compare
PFR28_05125 -3.0 -2.9 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_00960 -3.0 -6.9 hypothetical protein compare
PFR28_02608 -3.0 -2.0 DNA translocase FtsK compare
PFR28_04140 -2.9 -14.1 Carnitine monooxygenase oxygenase subunit compare
PFR28_04155 -2.9 -8.9 hypothetical protein conserved
PFR28_04157 -2.9 -12.1 L-carnitine dehydrogenase conserved
PFR28_01319 -2.8 -10.6 1,4-alpha-glucan branching enzyme GlgB compare
PFR28_03596 -2.7 -2.7 Transcriptional regulator MraZ compare
PFR28_00689 -2.7 -18.2 L-aspartate oxidase compare
PFR28_04154 -2.7 -4.7 HTH-type transcriptional regulator CdhR compare
PFR28_04156 -2.7 -7.6 3-keto-5-aminohexanoate cleavage enzyme conserved
PFR28_04148 -2.7 -8.3 hypothetical protein compare
PFR28_04164 -2.6 -10.0 Glycine betaine transport system permease protein OpuAB compare
PFR28_04165 -2.6 -11.0 Vitamin B12 import ATP-binding protein BtuD compare
PFR28_03363 -2.6 -5.3 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_04135 -2.6 -9.1 Serine hydroxymethyltransferase compare
PFR28_00186 -2.6 -1.8 ATP phosphoribosyltransferase compare
PFR28_04131 -2.5 -6.5 Sarcosine oxidase subunit gamma compare
PFR28_05015 -2.5 -3.8 Glutamate synthase [NADPH] large chain compare
PFR28_01366 -2.5 -1.7 Sulfite reductase [ferredoxin] compare
PFR28_04830 -2.5 -13.1 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_00194 -2.4 -6.9 Bifunctional enzyme CysN/CysC compare
PFR28_05016 -2.4 -2.4 Glutamate synthase [NADPH] small chain compare
PFR28_04985 -2.4 -1.7 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_04163 -2.4 -12.5 hypothetical protein compare
PFR28_04930 -2.4 -1.6 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_04986 -2.4 -1.6 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_03697 -2.3 -2.3 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_00918 -2.3 -8.7 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_00193 -2.3 -7.7 Sulfate adenylyltransferase subunit 2 compare
PFR28_00159 -2.3 -3.1 hypothetical protein compare
PFR28_04161 -2.3 -9.4 HTH-type transcriptional regulator CdhR compare
PFR28_04929 -2.2 -1.5 Histidine biosynthesis bifunctional protein HisB compare
PFR28_04252 -2.2 -8.6 Thiazole synthase compare
PFR28_00928 -2.2 -3.1 putative sugar transferase EpsL compare
PFR28_03724 -2.1 -6.5 Glucose-6-phosphate isomerase compare
PFR28_00296 -2.1 -1.7 Cytoskeleton protein RodZ compare
PFR28_04832 -2.1 -5.4 putative phosphatase compare
PFR28_04278 -2.1 -2.8 Dihydroxy-acid dehydratase compare
PFR28_00966 -2.1 -5.7 HTH-type transcriptional regulator CysB compare
PFR28_04418 -2.1 -1.4 Exodeoxyribonuclease compare
PFR28_04103 -2.0 -5.3 Biotin synthase compare
PFR28_05091 -2.0 -15.4 Phosphomethylpyrimidine synthase compare
PFR28_01142 -2.0 -6.7 Transaldolase compare
PFR28_00405 -2.0 -2.3 hypothetical protein compare
PFR28_02603 -2.0 -1.4 Siroheme synthase compare
PFR28_01365 -2.0 -1.9 hypothetical protein compare
PFR28_03653 -2.0 -3.4 Molybdopterin-synthase adenylyltransferase compare
PFR28_03282 -1.9 -4.1 Arginine N-succinyltransferase subunit alpha compare
PFR28_04932 -1.8 -1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_01583 -1.8 -2.1 hypothetical protein compare
PFR28_00089 -1.8 -1.5 Transcription termination/antitermination protein NusA compare
PFR28_04933 -1.8 -1.2 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_00305 -1.8 -5.6 2-isopropylmalate synthase compare
PFR28_00180 -1.8 -6.2 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_04072 -1.8 -2.5 Bifunctional folate synthesis protein compare
PFR28_00331 -1.8 -4.8 Tyrosine recombinase XerD compare
PFR28_00179 -1.7 -7.6 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_04517 -1.7 -8.6 Oxaloacetate decarboxylase alpha chain compare
PFR28_00839 -1.7 -3.8 hypothetical protein compare
PFR28_01394 -1.7 -9.6 Acetyl-coenzyme A synthetase compare
PFR28_03843 -1.7 -7.4 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_00181 -1.7 -7.9 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_01435 -1.7 -1.8 Response regulator UvrY compare
PFR28_02145 -1.7 -15.5 Glycogen synthase compare
PFR28_02821 -1.7 -2.3 3-isopropylmalate dehydrogenase compare
PFR28_03698 -1.7 -2.0 Acetolactate synthase isozyme 3 small subunit compare
PFR28_00695 -1.7 -1.1 Sulfur carrier protein TusA compare
PFR28_05201 -1.7 -2.9 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_04519 -1.7 -5.9 HTH-type transcriptional activator CmpR compare
PFR28_01396 -1.7 -6.2 hypothetical protein compare
PFR28_00169 -1.7 -5.0 Phosphocarrier protein NPr compare
PFR28_02824 -1.6 -1.6 3-isopropylmalate dehydratase large subunit compare
PFR28_02823 -1.6 -1.0 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_00356 -1.6 -5.0 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_05139 -1.6 -1.4 hypothetical protein compare
PFR28_01139 -1.6 -10.6 Intermembrane phospholipid transport system lipoprotein MlaA compare
PFR28_04902 -1.6 -2.9 Inner membrane protein YgaZ compare
PFR28_03413 -1.6 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_01395 -1.5 -2.3 D-beta-hydroxybutyrate dehydrogenase compare
PFR28_04425 -1.5 -8.2 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_03846 -1.5 -5.5 hypothetical protein compare
PFR28_00182 -1.5 -7.9 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_03412 -1.5 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_03202 -1.5 -1.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_04903 -1.5 -3.8 hypothetical protein compare
PFR28_01317 -1.5 -9.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 2 compare
PFR28_03844 -1.5 -4.8 Thiamine-phosphate synthase compare
PFR28_04518 -1.5 -7.5 2-oxoglutarate carboxylase small subunit compare
PFR28_02484 -1.5 -1.4 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_02838 -1.5 -9.2 Aromatic-amino-acid aminotransferase compare
PFR28_00184 -1.5 -3.1 hypothetical protein compare
PFR28_03806 -1.4 -2.6 Protein/nucleic acid deglycase 3 compare
PFR28_00913 -1.4 -4.1 Integration host factor subunit beta compare
PFR28_03369 -1.4 -5.7 Glycerol-3-phosphate regulon repressor compare
PFR28_04378 -1.4 -3.6 Tyrosine recombinase XerC compare
PFR28_04623 -1.4 -5.2 hypothetical protein conserved
PFR28_05212 -1.4 -5.1 Sensor histidine kinase RcsC compare
PFR28_04232 -1.4 -3.5 Glutathione synthetase compare
PFR28_00837 -1.3 -7.2 hypothetical protein compare
PFR28_04945 -1.3 -4.2 Sensory histidine kinase/phosphatase NtrB compare
PFR28_01182 -1.3 -2.5 hypothetical protein compare
PFR28_01397 -1.3 -6.2 Anaerobic nitric oxide reductase transcription regulator NorR compare
PFR28_01917 -1.3 -2.7 Glutamine transport ATP-binding protein GlnQ compare
PFR28_01113 -1.3 -2.6 DNA topoisomerase 1 compare
PFR28_04675 -1.2 -1.1 hypothetical protein compare
PFR28_03551 -1.2 -4.4 Cyclic pyranopterin monophosphate synthase compare
PFR28_05204 -1.2 -2.5 Sulfite reductase [ferredoxin] compare
PFR28_03209 -1.2 -3.1 Corrinoid adenosyltransferase compare
PFR28_01930 -1.2 -1.5 HTH-type transcriptional regulator McbR compare
PFR28_03578 -1.2 -2.7 Transcriptional activator protein CzcR compare
PFR28_01323 -1.1 -2.2 Acetyl-CoA acetyltransferase compare
PFR28_00690 -1.1 -3.8 RNA polymerase sigma-H factor compare
PFR28_05071 -1.1 -2.5 D-inositol-3-phosphate glycosyltransferase compare
PFR28_04208 -1.1 -3.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_05105 -1.1 -2.7 Phosphoserine phosphatase SerB2 compare
PFR28_05000 -1.1 -2.1 Cell division protein FtsN compare
PFR28_04380 -1.1 -1.5 Transcriptional regulator SutA compare
PFR28_01410 -1.1 -7.3 Response regulator GacA compare
PFR28_03387 -1.1 -1.3 hypothetical protein compare
PFR28_03012 -1.1 -4.8 Phosphate acyltransferase compare
PFR28_00930 -1.1 -5.7 GDP-perosamine synthase compare
PFR28_03227 -1.0 -7.8 Signal transduction histidine-protein kinase BarA compare
PFR28_01227 -1.0 -2.1 Trigger factor compare
PFR28_03414 -1.0 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_00926 -1.0 -0.6 hypothetical protein compare
PFR28_04102 -1.0 -4.7 8-amino-7-oxononanoate synthase compare
PFR28_00988 -1.0 -4.4 Sensor histidine kinase RcsC compare
PFR28_03533 -1.0 -2.0 DNA-binding protein HU 1 compare
PFR28_03865 -1.0 -3.9 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_03223 -1.0 -5.1 GTP pyrophosphokinase compare
PFR28_00427 -1.0 -7.1 RNA polymerase sigma factor RpoS compare
PFR28_04325 -0.9 -3.4 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_02949 -0.9 -3.0 hypothetical protein compare
PFR28_05118 -0.9 -3.2 N-acetylmuramoyl-L-alanine amidase AmiC compare
PFR28_04100 -0.9 -3.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_00196 -0.9 -4.9 Phosphate acetyltransferase conserved
PFR28_02449 -0.9 -4.2 putative branched-chain-amino-acid aminotransferase compare
PFR28_01369 -0.9 -4.4 Methionine synthase compare
PFR28_02111 -0.9 -3.1 hypothetical protein compare
PFR28_01060 -0.9 -2.1 HTH-type transcriptional repressor NanR compare
PFR28_01006 -0.9 -4.7 Molybdopterin molybdenumtransferase compare
PFR28_04958 -0.9 -1.3 hypothetical protein compare
PFR28_05062 -0.9 -5.3 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
PFR28_05067 -0.9 -1.7 hypothetical protein compare
PFR28_03570 -0.9 -2.8 p-hydroxybenzoic acid efflux pump subunit AaeA compare
PFR28_01324 -0.8 -3.1 putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B conserved
PFR28_01110 -0.8 -2.3 Fatty acid oxidation complex subunit alpha compare
PFR28_04882 -0.8 -5.5 Sulfur carrier protein FdhD compare
PFR28_04162 -0.8 -5.4 L-serine dehydratase TdcG compare
PFR28_05079 -0.8 -5.5 hypothetical protein compare
PFR28_01031 -0.8 -3.0 Sensor protein QseC compare
PFR28_04110 -0.8 -4.8 Malate synthase G compare
PFR28_04620 -0.8 -2.3 Zinc uptake regulation protein compare
PFR28_01014 -0.8 -1.4 Pyrimidine/purine nucleoside phosphorylase compare
PFR28_01386 -0.8 -1.6 Glutamine transport ATP-binding protein GlnQ compare
PFR28_04927 -0.8 -2.2 PanD regulatory factor compare
PFR28_03956 -0.8 -4.7 putative ABC transporter ATP-binding protein compare
PFR28_04436 -0.8 -3.2 hypothetical protein compare
PFR28_03572 -0.8 -4.1 p-hydroxybenzoic acid efflux pump subunit AaeB compare
PFR28_04887 -0.8 -1.7 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_04897 -0.7 -2.9 Agmatine deiminase compare
PFR28_00605 -0.7 -6.3 hypothetical protein compare
PFR28_00069 -0.7 -1.5 Outer membrane protein assembly factor BamE compare
PFR28_00932 -0.7 -6.8 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
PFR28_02763 -0.7 -1.0 hypothetical protein compare
PFR28_03957 -0.7 -4.7 hypothetical protein compare
PFR28_01325 -0.7 -2.8 putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A compare
PFR28_01181 -0.7 -3.7 hypothetical protein compare
PFR28_04842 -0.7 -2.4 D-3-phosphoglycerate dehydrogenase compare
PFR28_05206 -0.7 -4.4 Precorrin-2 C(20)-methyltransferase compare
PFR28_03255 -0.7 -5.3 Chemotaxis protein methyltransferase Cher2 compare
PFR28_05207 -0.7 -3.0 Siroheme synthase compare
PFR28_04120 -0.7 -1.3 hypothetical protein compare
PFR28_00187 -0.7 -0.8 Histidinol dehydrogenase compare
PFR28_03950 -0.7 -1.3 Transcriptional repressor NrdR compare
PFR28_02688 -0.7 -1.5 hypothetical protein compare
PFR28_04521 -0.7 -2.0 HTH-type transcriptional regulator HexR compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source L-Carnitine hydrochloride in Pseudomonas sp. RS175

For carbon source L-Carnitine hydrochloride across organisms