Experiment set5S263 for Pseudomonas sp. RS175

Compare to:

L-Carnitine hydrochloride 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFR28_03653 -5.5 -4.1 Molybdopterin-synthase adenylyltransferase compare
PFR28_00098 -4.9 -5.8 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_04071 -4.5 -2.0 Multifunctional CCA protein compare
PFR28_03388 -4.4 -9.8 Quinolinate synthase A compare
PFR28_05244 -4.3 -14.5 Copper-exporting P-type ATPase compare
PFR28_04782 -4.1 -16.9 hypothetical protein compare
PFR28_04246 -3.5 -4.2 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_02810 -3.5 -3.4 O-succinylhomoserine sulfhydrylase compare
PFR28_04245 -3.5 -4.1 Homoserine O-succinyltransferase compare
PFR28_04834 -3.5 -3.4 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04144 -3.4 -5.5 hypothetical protein compare
PFR28_04156 -3.4 -4.7 3-keto-5-aminohexanoate cleavage enzyme conserved
PFR28_04146 -3.4 -11.8 hypothetical protein compare
PFR28_04157 -3.4 -12.1 L-carnitine dehydrogenase conserved
PFR28_03714 -3.3 -11.8 RNA polymerase-binding transcription factor DksA compare
PFR28_04148 -3.3 -11.4 hypothetical protein compare
PFR28_04145 -3.3 -9.4 Protein FixB compare
PFR28_04131 -3.3 -8.1 Sarcosine oxidase subunit gamma compare
PFR28_04149 -3.3 -8.2 hypothetical protein compare
PFR28_04147 -3.2 -12.8 putative N-methylproline demethylase compare
PFR28_04139 -3.2 -13.6 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component compare
PFR28_05125 -3.1 -2.1 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_00960 -3.0 -5.7 hypothetical protein compare
PFR28_00188 -3.0 -3.6 Histidinol-phosphate aminotransferase compare
PFR28_04158 -3.0 -12.6 L-carnitine dehydrogenase conserved
PFR28_04252 -3.0 -10.0 Thiazole synthase compare
PFR28_04132 -2.9 -21.3 Sarcosine oxidase subunit alpha compare
PFR28_04140 -2.9 -14.9 Carnitine monooxygenase oxygenase subunit compare
PFR28_00689 -2.8 -18.3 L-aspartate oxidase compare
PFR28_04133 -2.8 -9.2 Sarcosine oxidase subunit delta compare
PFR28_00193 -2.8 -7.9 Sulfate adenylyltransferase subunit 2 compare
PFR28_04134 -2.7 -12.8 Sarcosine oxidase subunit beta compare
PFR28_04325 -2.7 -5.8 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_03363 -2.6 -5.0 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_01142 -2.6 -5.5 Transaldolase compare
PFR28_01319 -2.6 -10.6 1,4-alpha-glucan branching enzyme GlgB compare
PFR28_04135 -2.5 -9.7 Serine hydroxymethyltransferase compare
PFR28_04164 -2.5 -8.9 Glycine betaine transport system permease protein OpuAB compare
PFR28_04155 -2.5 -10.3 hypothetical protein conserved
PFR28_03596 -2.4 -2.8 Transcriptional regulator MraZ compare
PFR28_05015 -2.4 -2.9 Glutamate synthase [NADPH] large chain compare
PFR28_05016 -2.4 -1.7 Glutamate synthase [NADPH] small chain compare
PFR28_01366 -2.4 -2.3 Sulfite reductase [ferredoxin] compare
PFR28_00184 -2.3 -3.7 hypothetical protein compare
PFR28_04930 -2.3 -1.6 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_01395 -2.3 -4.8 D-beta-hydroxybutyrate dehydrogenase compare
PFR28_04986 -2.3 -1.6 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_03697 -2.3 -2.2 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_04830 -2.3 -11.9 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_00918 -2.2 -8.6 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_04165 -2.2 -7.5 Vitamin B12 import ATP-binding protein BtuD compare
PFR28_04832 -2.2 -4.8 putative phosphatase compare
PFR28_00159 -2.2 -3.3 hypothetical protein compare
PFR28_00186 -2.2 -2.1 ATP phosphoribosyltransferase compare
PFR28_00068 -2.2 -1.6 hypothetical protein compare
PFR28_04278 -2.2 -1.5 Dihydroxy-acid dehydratase compare
PFR28_04985 -2.2 -2.1 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_00194 -2.2 -6.9 Bifunctional enzyme CysN/CysC compare
PFR28_04929 -2.2 -1.5 Histidine biosynthesis bifunctional protein HisB compare
PFR28_03843 -2.1 -7.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_03844 -2.1 -6.2 Thiamine-phosphate synthase compare
PFR28_00296 -2.1 -2.5 Cytoskeleton protein RodZ compare
PFR28_04163 -2.1 -12.0 hypothetical protein compare
PFR28_02608 -2.1 -2.3 DNA translocase FtsK compare
PFR28_05091 -2.1 -15.0 Phosphomethylpyrimidine synthase compare
PFR28_04418 -2.0 -1.4 Exodeoxyribonuclease compare
PFR28_03414 -2.0 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_04161 -2.0 -7.8 HTH-type transcriptional regulator CdhR compare
PFR28_00179 -2.0 -7.7 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_05000 -2.0 -3.3 Cell division protein FtsN compare
PFR28_00405 -2.0 -2.2 hypothetical protein compare
PFR28_04154 -2.0 -3.2 HTH-type transcriptional regulator CdhR compare
PFR28_00966 -2.0 -5.4 HTH-type transcriptional regulator CysB compare
PFR28_01365 -2.0 -1.9 hypothetical protein compare
PFR28_04103 -1.9 -5.1 Biotin synthase compare
PFR28_01930 -1.9 -1.3 HTH-type transcriptional regulator McbR compare
PFR28_03412 -1.9 -4.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_00305 -1.8 -5.3 2-isopropylmalate synthase compare
PFR28_00181 -1.8 -9.1 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_00180 -1.8 -5.5 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_04932 -1.8 -1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_03413 -1.8 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_04933 -1.8 -1.2 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_02824 -1.8 -1.2 3-isopropylmalate dehydratase large subunit compare
PFR28_02603 -1.7 -1.6 Siroheme synthase compare
PFR28_01391 -1.7 -2.6 Peptidyl-prolyl cis-trans isomerase C compare
PFR28_02821 -1.7 -2.0 3-isopropylmalate dehydrogenase compare
PFR28_04519 -1.7 -6.3 HTH-type transcriptional activator CmpR compare
PFR28_02145 -1.7 -15.3 Glycogen synthase compare
PFR28_04425 -1.6 -7.8 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_01394 -1.6 -9.1 Acetyl-coenzyme A synthetase compare
PFR28_04887 -1.6 -2.4 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_03846 -1.6 -6.1 hypothetical protein compare
PFR28_00182 -1.6 -7.6 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_00695 -1.6 -1.1 Sulfur carrier protein TusA compare
PFR28_02823 -1.6 -1.0 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_00928 -1.6 -2.8 putative sugar transferase EpsL compare
PFR28_04903 -1.5 -3.8 hypothetical protein compare
PFR28_04208 -1.5 -4.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_00356 -1.5 -4.3 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_05212 -1.5 -5.1 Sensor histidine kinase RcsC compare
PFR28_01317 -1.5 -9.1 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 2 compare
PFR28_05204 -1.5 -2.6 Sulfite reductase [ferredoxin] compare
PFR28_01139 -1.5 -10.4 Intermembrane phospholipid transport system lipoprotein MlaA compare
PFR28_03698 -1.5 -2.6 Acetolactate synthase isozyme 3 small subunit compare
PFR28_02838 -1.5 -7.4 Aromatic-amino-acid aminotransferase compare
PFR28_04517 -1.5 -7.8 Oxaloacetate decarboxylase alpha chain compare
PFR28_02484 -1.5 -1.4 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_04072 -1.5 -1.7 Bifunctional folate synthesis protein compare
PFR28_03530 -1.4 -1.9 hypothetical protein compare
PFR28_04623 -1.4 -4.3 hypothetical protein conserved
PFR28_00169 -1.4 -4.0 Phosphocarrier protein NPr compare
PFR28_03724 -1.4 -4.6 Glucose-6-phosphate isomerase compare
PFR28_01397 -1.4 -6.2 Anaerobic nitric oxide reductase transcription regulator NorR compare
PFR28_03666 -1.3 -1.5 hypothetical protein compare
PFR28_03202 -1.3 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_04958 -1.3 -1.7 hypothetical protein compare
PFR28_04902 -1.3 -3.0 Inner membrane protein YgaZ compare
PFR28_04518 -1.3 -6.7 2-oxoglutarate carboxylase small subunit compare
PFR28_03191 -1.3 -1.8 hypothetical protein compare
PFR28_03865 -1.3 -4.3 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_03282 -1.3 -3.4 Arginine N-succinyltransferase subunit alpha compare
PFR28_04100 -1.3 -4.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_04380 -1.2 -1.5 Transcriptional regulator SutA compare
PFR28_01594 -1.2 -2.3 hypothetical protein compare
PFR28_00690 -1.2 -4.0 RNA polymerase sigma-H factor compare
PFR28_01190 -1.1 -1.2 hypothetical protein compare
PFR28_02841 -1.1 -1.1 hypothetical protein compare
PFR28_00913 -1.1 -3.4 Integration host factor subunit beta compare
PFR28_01410 -1.1 -7.0 Response regulator GacA compare
PFR28_01323 -1.1 -2.8 Acetyl-CoA acetyltransferase compare
PFR28_00331 -1.1 -3.3 Tyrosine recombinase XerD compare
PFR28_03680 -1.1 -2.4 hypothetical protein compare
PFR28_04378 -1.1 -2.8 Tyrosine recombinase XerC compare
PFR28_01369 -1.1 -5.1 Methionine synthase compare
PFR28_03369 -1.1 -4.6 Glycerol-3-phosphate regulon repressor compare
PFR28_02719 -1.1 -1.5 Integration host factor subunit alpha compare
PFR28_03875 -1.1 -1.2 hypothetical protein compare
PFR28_03956 -1.1 -5.3 putative ABC transporter ATP-binding protein compare
PFR28_02283 -1.1 -2.0 hypothetical protein compare
PFR28_03551 -1.1 -4.5 Cyclic pyranopterin monophosphate synthase compare
PFR28_03227 -1.1 -7.7 Signal transduction histidine-protein kinase BarA compare
PFR28_05105 -1.0 -2.6 Phosphoserine phosphatase SerB2 compare
PFR28_04232 -1.0 -3.0 Glutathione synthetase compare
PFR28_01435 -1.0 -1.3 Response regulator UvrY compare
PFR28_03266 -1.0 -1.9 hypothetical protein compare
PFR28_02449 -1.0 -4.4 putative branched-chain-amino-acid aminotransferase compare
PFR28_00089 -1.0 -1.2 Transcription termination/antitermination protein NusA compare
PFR28_00780 -1.0 -1.2 hypothetical protein compare
PFR28_04941 -1.0 -2.4 Protein-export protein SecB compare
PFR28_04944 -1.0 -3.1 DNA-binding transcriptional regulator NtrC compare
PFR28_00988 -1.0 -4.4 Sensor histidine kinase RcsC compare
PFR28_00371 -1.0 -2.7 hypothetical protein compare
PFR28_00930 -1.0 -4.6 GDP-perosamine synthase compare
PFR28_00926 -1.0 -0.6 hypothetical protein compare
PFR28_01583 -1.0 -1.3 hypothetical protein compare
PFR28_00837 -0.9 -5.3 hypothetical protein compare
PFR28_03902 -0.9 -1.2 hypothetical protein compare
PFR28_00427 -0.9 -6.9 RNA polymerase sigma factor RpoS compare
PFR28_03223 -0.9 -4.9 GTP pyrophosphokinase compare
PFR28_05062 -0.9 -4.9 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
PFR28_01094 -0.9 -1.9 hypothetical protein compare
PFR28_04842 -0.9 -2.8 D-3-phosphoglycerate dehydrogenase compare
PFR28_00839 -0.9 -2.7 hypothetical protein compare
PFR28_02688 -0.9 -1.8 hypothetical protein compare
PFR28_01324 -0.9 -4.3 putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B conserved
PFR28_04565 -0.9 -6.2 Protein RarD compare
PFR28_04102 -0.9 -4.4 8-amino-7-oxononanoate synthase compare
PFR28_03012 -0.9 -3.8 Phosphate acyltransferase compare
PFR28_04110 -0.9 -5.2 Malate synthase G compare
PFR28_00622 -0.9 -2.2 Beta-ketoadipyl-CoA thiolase compare
PFR28_01014 -0.8 -1.4 Pyrimidine/purine nucleoside phosphorylase compare
PFR28_03192 -0.8 -2.2 hypothetical protein compare
PFR28_00196 -0.8 -4.5 Phosphate acetyltransferase conserved
PFR28_04064 -0.8 -1.7 Ribosomal RNA small subunit methyltransferase A compare
PFR28_02969 -0.8 -2.1 hypothetical protein compare
PFR28_05139 -0.8 -0.9 hypothetical protein compare
PFR28_04120 -0.8 -1.4 hypothetical protein compare
PFR28_00069 -0.8 -1.6 Outer membrane protein assembly factor BamE compare
PFR28_04618 -0.8 -2.3 High-affinity zinc uptake system membrane protein ZnuB compare
PFR28_01325 -0.8 -3.2 putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A compare
PFR28_03573 -0.8 -4.6 Toluene efflux pump outer membrane protein TtgI compare
PFR28_01231 -0.8 -1.1 Peptidyl-prolyl cis-trans isomerase D compare
PFR28_02289 -0.8 -1.6 HTH-type transcriptional repressor NicS compare
PFR28_05181 -0.8 -1.8 Urease subunit gamma compare
PFR28_03549 -0.8 -1.4 Molybdopterin synthase catalytic subunit compare
PFR28_04529 -0.8 -1.8 hypothetical protein compare
PFR28_00299 -0.8 -0.6 hypothetical protein compare
PFR28_01182 -0.8 -1.8 hypothetical protein compare
PFR28_03273 -0.8 -2.3 Aspartate kinase compare
PFR28_02741 -0.8 -2.7 Translational regulator CsrA1 compare
PFR28_04945 -0.8 -2.1 Sensory histidine kinase/phosphatase NtrB compare
PFR28_02092 -0.8 -3.5 hypothetical protein compare
PFR28_00927 -0.7 -5.1 D-inositol-3-phosphate glycosyltransferase compare
PFR28_01326 -0.7 -1.6 HTH-type transcriptional regulator GltC compare
PFR28_04436 -0.7 -3.0 hypothetical protein compare
PFR28_01212 -0.7 -2.1 hypothetical protein compare
PFR28_01578 -0.7 -2.3 HTH-type transcriptional regulator LutR compare
PFR28_00478 -0.7 -1.6 Transcriptional regulatory protein DegU compare
PFR28_04735 -0.7 -1.9 5S ribosomal RNA compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Carnitine hydrochloride in Pseudomonas sp. RS175

For carbon source L-Carnitine hydrochloride across organisms