Experiment set5S262 for Pseudomonas sp. RS175

Compare to:

L-Carnitine hydrochloride 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFR28_00098 -4.7 -7.2 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_03388 -4.7 -9.0 Quinolinate synthase A compare
PFR28_05244 -4.2 -14.7 Copper-exporting P-type ATPase compare
PFR28_04782 -4.0 -18.0 hypothetical protein compare
PFR28_04245 -3.6 -3.5 Homoserine O-succinyltransferase compare
PFR28_04246 -3.5 -5.8 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_03714 -3.5 -12.9 RNA polymerase-binding transcription factor DksA compare
PFR28_04145 -3.3 -6.3 Protein FixB compare
PFR28_02810 -3.3 -6.7 O-succinylhomoserine sulfhydrylase compare
PFR28_04071 -3.3 -1.9 Multifunctional CCA protein compare
PFR28_04158 -3.2 -12.3 L-carnitine dehydrogenase conserved
PFR28_04834 -3.2 -7.1 L-threonine dehydratase biosynthetic IlvA compare
PFR28_05125 -3.2 -2.2 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_04146 -3.1 -10.4 hypothetical protein compare
PFR28_04144 -3.1 -5.4 hypothetical protein compare
PFR28_04149 -3.0 -8.9 hypothetical protein compare
PFR28_04132 -2.9 -19.9 Sarcosine oxidase subunit alpha compare
PFR28_00188 -2.8 -5.9 Histidinol-phosphate aminotransferase compare
PFR28_04147 -2.8 -9.7 putative N-methylproline demethylase compare
PFR28_04133 -2.8 -6.8 Sarcosine oxidase subunit delta compare
PFR28_00296 -2.8 -4.5 Cytoskeleton protein RodZ compare
PFR28_01142 -2.7 -5.5 Transaldolase compare
PFR28_04139 -2.7 -10.7 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component compare
PFR28_00960 -2.7 -7.3 hypothetical protein compare
PFR28_03363 -2.6 -6.1 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_00689 -2.6 -16.0 L-aspartate oxidase compare
PFR28_04135 -2.6 -10.0 Serine hydroxymethyltransferase compare
PFR28_00180 -2.5 -8.1 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_04154 -2.5 -3.9 HTH-type transcriptional regulator CdhR compare
PFR28_04165 -2.5 -8.1 Vitamin B12 import ATP-binding protein BtuD compare
PFR28_01319 -2.5 -11.0 1,4-alpha-glucan branching enzyme GlgB compare
PFR28_03653 -2.5 -4.6 Molybdopterin-synthase adenylyltransferase compare
PFR28_04134 -2.5 -10.4 Sarcosine oxidase subunit beta compare
PFR28_00193 -2.5 -8.3 Sulfate adenylyltransferase subunit 2 compare
PFR28_05015 -2.5 -5.2 Glutamate synthase [NADPH] large chain compare
PFR28_04985 -2.4 -1.7 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_04140 -2.4 -10.7 Carnitine monooxygenase oxygenase subunit compare
PFR28_04157 -2.4 -11.8 L-carnitine dehydrogenase conserved
PFR28_04156 -2.4 -7.3 3-keto-5-aminohexanoate cleavage enzyme conserved
PFR28_03697 -2.4 -1.7 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_01366 -2.4 -2.8 Sulfite reductase [ferredoxin] compare
PFR28_05016 -2.3 -3.9 Glutamate synthase [NADPH] small chain compare
PFR28_04148 -2.3 -7.9 hypothetical protein compare
PFR28_00186 -2.3 -3.6 ATP phosphoribosyltransferase compare
PFR28_00182 -2.3 -10.1 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_04986 -2.3 -2.1 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_04155 -2.2 -9.2 hypothetical protein conserved
PFR28_00966 -2.2 -5.5 HTH-type transcriptional regulator CysB compare
PFR28_04131 -2.2 -4.7 Sarcosine oxidase subunit gamma compare
PFR28_04161 -2.2 -9.6 HTH-type transcriptional regulator CdhR compare
PFR28_04278 -2.2 -2.1 Dihydroxy-acid dehydratase compare
PFR28_01365 -2.1 -1.5 hypothetical protein compare
PFR28_00159 -2.1 -5.2 hypothetical protein compare
PFR28_04418 -2.1 -1.4 Exodeoxyribonuclease compare
PFR28_04252 -2.1 -9.0 Thiazole synthase compare
PFR28_03846 -2.1 -7.3 hypothetical protein compare
PFR28_04830 -2.1 -9.3 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_00928 -2.1 -3.2 putative sugar transferase EpsL compare
PFR28_03844 -2.0 -6.2 Thiamine-phosphate synthase compare
PFR28_00194 -2.0 -7.3 Bifunctional enzyme CysN/CysC compare
PFR28_03843 -2.0 -6.3 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_04832 -2.0 -5.8 putative phosphatase compare
PFR28_02704 -2.0 -1.3 hypothetical protein compare
PFR28_02603 -2.0 -1.4 Siroheme synthase compare
PFR28_04930 -2.0 -2.7 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_03412 -1.9 -5.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_00305 -1.9 -5.7 2-isopropylmalate synthase compare
PFR28_00181 -1.9 -8.2 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_00089 -1.9 -1.4 Transcription termination/antitermination protein NusA compare
PFR28_01139 -1.9 -11.7 Intermembrane phospholipid transport system lipoprotein MlaA compare
PFR28_01113 -1.9 -3.1 DNA topoisomerase 1 compare
PFR28_04932 -1.9 -1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_04933 -1.8 -1.2 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_01435 -1.8 -1.9 Response regulator UvrY compare
PFR28_02824 -1.8 -1.2 3-isopropylmalate dehydratase large subunit compare
PFR28_04163 -1.8 -10.2 hypothetical protein compare
PFR28_01317 -1.8 -10.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 2 compare
PFR28_03282 -1.8 -4.5 Arginine N-succinyltransferase subunit alpha compare
PFR28_04164 -1.8 -5.6 Glycine betaine transport system permease protein OpuAB compare
PFR28_04103 -1.8 -5.8 Biotin synthase compare
PFR28_04929 -1.8 -2.0 Histidine biosynthesis bifunctional protein HisB compare
PFR28_03413 -1.7 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_01930 -1.7 -1.6 HTH-type transcriptional regulator McbR compare
PFR28_02145 -1.7 -14.7 Glycogen synthase compare
PFR28_02821 -1.7 -2.6 3-isopropylmalate dehydrogenase compare
PFR28_04425 -1.7 -8.4 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_00695 -1.7 -1.1 Sulfur carrier protein TusA compare
PFR28_03724 -1.7 -5.6 Glucose-6-phosphate isomerase compare
PFR28_00913 -1.7 -4.9 Integration host factor subunit beta compare
PFR28_01394 -1.7 -8.3 Acetyl-coenzyme A synthetase compare
PFR28_02823 -1.7 -1.0 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_04519 -1.7 -4.9 HTH-type transcriptional activator CmpR compare
PFR28_05091 -1.7 -11.7 Phosphomethylpyrimidine synthase compare
PFR28_02688 -1.6 -2.6 hypothetical protein compare
PFR28_02608 -1.6 -2.1 DNA translocase FtsK compare
PFR28_03698 -1.6 -2.7 Acetolactate synthase isozyme 3 small subunit compare
PFR28_05212 -1.6 -6.5 Sensor histidine kinase RcsC compare
PFR28_00179 -1.6 -7.2 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_02872 -1.6 -1.4 hypothetical protein compare
PFR28_04380 -1.6 -2.2 Transcriptional regulator SutA compare
PFR28_00839 -1.5 -3.7 hypothetical protein compare
PFR28_04902 -1.5 -3.1 Inner membrane protein YgaZ compare
PFR28_01395 -1.5 -3.1 D-beta-hydroxybutyrate dehydrogenase compare
PFR28_00918 -1.5 -7.3 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_02484 -1.5 -1.7 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_01397 -1.4 -6.6 Anaerobic nitric oxide reductase transcription regulator NorR compare
PFR28_04517 -1.4 -7.5 Oxaloacetate decarboxylase alpha chain compare
PFR28_01375 -1.4 -1.5 hypothetical protein compare
PFR28_03612 -1.4 -3.0 Cell division protein ZapE compare
PFR28_00356 -1.4 -3.4 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_01043 -1.4 -2.9 hypothetical protein compare
PFR28_03865 -1.4 -5.2 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_00169 -1.3 -5.2 Phosphocarrier protein NPr compare
PFR28_03369 -1.3 -3.9 Glycerol-3-phosphate regulon repressor compare
PFR28_00930 -1.3 -5.8 GDP-perosamine synthase compare
PFR28_00756 -1.3 -2.1 ATP-dependent RNA helicase RhlE compare
PFR28_01396 -1.3 -3.0 hypothetical protein compare
PFR28_03902 -1.3 -1.3 hypothetical protein compare
PFR28_02838 -1.3 -6.8 Aromatic-amino-acid aminotransferase compare
PFR28_03551 -1.3 -3.7 Cyclic pyranopterin monophosphate synthase compare
PFR28_01410 -1.3 -7.3 Response regulator GacA compare
PFR28_01777 -1.3 -1.8 putative trans-3-hydroxy-L-proline dehydratase compare
PFR28_01323 -1.3 -3.2 Acetyl-CoA acetyltransferase compare
PFR28_00525 -1.2 -3.4 Outer membrane lipoprotein SlyB compare
PFR28_04518 -1.2 -6.5 2-oxoglutarate carboxylase small subunit compare
PFR28_04623 -1.2 -3.3 hypothetical protein conserved
PFR28_00988 -1.2 -5.1 Sensor histidine kinase RcsC compare
PFR28_00563 -1.2 -1.6 Transcriptional regulatory protein OmpR compare
PFR28_05105 -1.2 -2.9 Phosphoserine phosphatase SerB2 compare
PFR28_00690 -1.2 -4.2 RNA polymerase sigma-H factor compare
PFR28_04325 -1.2 -3.4 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_03227 -1.1 -7.9 Signal transduction histidine-protein kinase BarA compare
PFR28_04208 -1.1 -4.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_02800 -1.1 -1.1 hypothetical protein compare
PFR28_04842 -1.1 -3.2 D-3-phosphoglycerate dehydrogenase compare
PFR28_01028 -1.1 -3.6 Thiol-disulfide oxidoreductase ResA compare
PFR28_01969 -1.1 -2.2 hypothetical protein compare
PFR28_00261 -1.1 -2.6 hypothetical protein compare
PFR28_04373 -1.1 -4.0 Iron-sulfur cluster assembly protein CyaY compare
PFR28_02449 -1.1 -4.7 putative branched-chain-amino-acid aminotransferase compare
PFR28_05046 -1.0 -2.0 hypothetical protein compare
PFR28_03012 -1.0 -3.4 Phosphate acyltransferase compare
PFR28_04565 -1.0 -7.3 Protein RarD compare
PFR28_05062 -1.0 -6.0 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
PFR28_00926 -1.0 -0.7 hypothetical protein compare
PFR28_03016 -1.0 -4.4 hypothetical protein compare
PFR28_02507 -1.0 -1.4 Phosphoglycolate phosphatase compare
PFR28_04232 -1.0 -3.1 Glutathione synthetase compare
PFR28_03223 -1.0 -5.2 GTP pyrophosphokinase compare
PFR28_00331 -1.0 -2.8 Tyrosine recombinase XerD compare
PFR28_05147 -0.9 -3.0 Azurin compare
PFR28_01751 -0.9 -2.5 putative type II secretion system protein HxcR compare
PFR28_03947 -0.9 -3.2 Riboflavin biosynthesis protein RibBA compare
PFR28_04903 -0.9 -2.8 hypothetical protein compare
PFR28_01979 -0.9 -3.0 hypothetical protein compare
PFR28_04100 -0.9 -3.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_04944 -0.9 -3.3 DNA-binding transcriptional regulator NtrC compare
PFR28_03387 -0.9 -1.2 hypothetical protein compare
PFR28_05000 -0.9 -1.9 Cell division protein FtsN compare
PFR28_01004 -0.9 -4.5 Molybdenum cofactor guanylyltransferase compare
PFR28_04102 -0.9 -4.7 8-amino-7-oxononanoate synthase compare
PFR28_03957 -0.9 -5.1 hypothetical protein compare
PFR28_03066 -0.9 -2.5 Adaptive-response sensory-kinase SasA compare
PFR28_01816 -0.9 -2.0 hypothetical protein compare
PFR28_02719 -0.9 -1.2 Integration host factor subunit alpha compare
PFR28_04675 -0.9 -0.7 hypothetical protein compare
PFR28_03736 -0.9 -1.9 hypothetical protein compare
PFR28_00837 -0.9 -4.2 hypothetical protein compare
PFR28_04945 -0.9 -3.8 Sensory histidine kinase/phosphatase NtrB compare
PFR28_04378 -0.9 -2.3 Tyrosine recombinase XerC compare
PFR28_04887 -0.9 -1.2 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_03573 -0.8 -4.7 Toluene efflux pump outer membrane protein TtgI compare
PFR28_04953 -0.8 -6.4 Maltodextrin phosphorylase compare
PFR28_03601 -0.8 -2.7 hypothetical protein compare
PFR28_01077 -0.8 -2.7 Recombination protein RecR compare
PFR28_01939 -0.8 -1.8 Phosphonoacetaldehyde hydrolase compare
PFR28_04072 -0.8 -1.7 Bifunctional folate synthesis protein compare
PFR28_04882 -0.8 -5.5 Sulfur carrier protein FdhD compare
PFR28_00460 -0.8 -1.8 hypothetical protein compare
PFR28_01664 -0.8 -4.0 Nodulation protein D 2 compare
PFR28_01672 -0.8 -1.7 hypothetical protein compare
PFR28_00427 -0.8 -5.5 RNA polymerase sigma factor RpoS compare
PFR28_00456 -0.8 -1.7 hypothetical protein compare
PFR28_03203 -0.8 -2.8 Bifunctional adenosylcobalamin biosynthesis protein CobP compare
PFR28_05205 -0.8 -1.9 Precorrin-8X methylmutase compare
PFR28_02851 -0.8 -2.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PFR28_01006 -0.8 -3.4 Molybdopterin molybdenumtransferase compare
PFR28_02151 -0.8 -2.8 hypothetical protein compare
PFR28_01078 -0.8 -2.0 Adenine phosphoribosyltransferase compare
PFR28_00403 -0.8 -1.1 Regulator of sigma-E protease RseP compare
PFR28_00424 -0.8 -3.5 '5'-nucleotidase SurE' transl_table=11 compare
PFR28_00448 -0.8 -1.8 hypothetical protein compare
PFR28_01631 -0.8 -2.8 Nitrate/nitrite transporter NarK compare
PFR28_01137 -0.8 -1.3 hypothetical protein compare
PFR28_01179 -0.8 -3.1 hypothetical protein compare
PFR28_02232 -0.8 -1.1 hypothetical protein compare
PFR28_03572 -0.8 -3.8 p-hydroxybenzoic acid efflux pump subunit AaeB compare
PFR28_02283 -0.8 -1.8 hypothetical protein compare
PFR28_03240 -0.8 -1.2 IS110 family transposase ISPfl1 compare
PFR28_04436 -0.8 -3.2 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Carnitine hydrochloride in Pseudomonas sp. RS175

For carbon source L-Carnitine hydrochloride across organisms