Experiment set5S262 for Pseudomonas sp. RS175

Compare to:

L-Carnitine hydrochloride 10 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFR28_04721 +1.8 3.7 hypothetical protein compare
PFR28_01362 +1.6 2.5 hypothetical protein compare
PFR28_00844 +1.3 3.1 hypothetical protein compare
PFR28_00535 +1.3 1.6 hypothetical protein compare
PFR28_02201 +1.1 2.5 Chaperone SurA compare
PFR28_00980 +1.1 1.3 ATP-dependent RNA helicase DeaD compare
PFR28_05134 +1.1 2.3 hypothetical protein compare
PFR28_01661 +1.1 2.1 Delta(1)-pyrroline-2-carboxylate/Delta(1)- piperideine-2-carboxylate reductase compare
PFR28_00828 +1.0 9.5 Anaerobic nitric oxide reductase transcription regulator NorR compare
PFR28_03259 +1.0 2.7 hypothetical protein compare
PFR28_03257 +0.9 6.4 hypothetical protein compare
PFR28_03631 +0.9 1.4 hypothetical protein compare
PFR28_00807 +0.9 4.0 Flagellar P-ring protein compare
PFR28_04607 +0.9 1.9 Organic hydroperoxide resistance protein OhrB compare
PFR28_00613 +0.9 1.2 hypothetical protein compare
PFR28_00602 +0.9 1.2 hypothetical protein compare
PFR28_02298 +0.8 2.0 hypothetical protein compare
PFR28_00836 +0.8 7.0 Flagellar FliJ protein compare
PFR28_01173 +0.8 1.3 hypothetical protein compare
PFR28_01450 +0.8 0.8 hypothetical protein compare
PFR28_01190 +0.8 1.2 hypothetical protein compare
PFR28_00806 +0.8 6.2 Flagellar L-ring protein compare
PFR28_00459 +0.8 3.4 hypothetical protein compare
PFR28_00721 +0.8 1.9 hypothetical protein compare
PFR28_00056 +0.7 2.4 hypothetical protein compare
PFR28_00833 +0.7 4.6 Flagellar motor switch protein FliG compare
PFR28_00831 +0.7 5.6 Flagellar hook-basal body complex protein FliE compare
PFR28_00826 +0.7 4.7 Flagellar secretion chaperone FliS compare
PFR28_02167 +0.7 2.6 hypothetical protein compare
PFR28_00835 +0.7 6.3 Flagellum-specific ATP synthase compare
PFR28_02547 +0.7 2.9 Phosphoglycolate phosphatase compare
PFR28_03232 +0.7 1.4 putative protein YfgD compare
PFR28_01960 +0.7 1.3 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase compare
PFR28_03251 +0.7 6.0 Flagellar hook protein FlgE compare
PFR28_00832 +0.7 5.5 Flagellar M-ring protein compare
PFR28_05006 +0.7 5.9 Penicillin-binding protein 1A compare
PFR28_02888 +0.7 1.0 hypothetical protein compare
PFR28_00846 +0.6 5.1 Flagellar biosynthetic protein FliQ compare
PFR28_02237 +0.6 1.0 hypothetical protein compare
PFR28_00834 +0.6 5.4 hypothetical protein compare
PFR28_00718 +0.6 2.2 hypothetical protein compare
PFR28_03900 +0.6 1.1 hypothetical protein compare
PFR28_00809 +0.6 5.5 hypothetical protein compare
PFR28_03182 +0.6 2.1 Recombination-associated protein RdgC compare
PFR28_03253 +0.6 4.8 Flagellar basal-body rod protein FlgC compare
PFR28_05023 +0.6 1.0 hypothetical protein compare
PFR28_04224 +0.6 1.2 hypothetical protein compare
PFR28_04868 +0.6 1.4 Transcriptional regulatory protein OmpR compare
PFR28_01180 +0.6 4.0 hypothetical protein compare
PFR28_00852 +0.6 5.6 RNA polymerase sigma factor FliA compare
PFR28_00848 +0.6 4.9 Flagellar biosynthetic protein FlhB compare
PFR28_05111 +0.6 3.6 Motility protein B compare
PFR28_03324 +0.6 1.3 hypothetical protein compare
PFR28_01150 +0.6 1.7 hypothetical protein compare
PFR28_03346 +0.6 1.4 Ion-translocating oxidoreductase complex subunit D compare
PFR28_01347 +0.6 1.6 hypothetical protein compare
PFR28_03254 +0.6 4.2 Flagellar basal body rod protein FlgB compare
PFR28_05092 +0.6 3.0 hypothetical protein compare
PFR28_00842 +0.6 4.8 Flagellar motor switch protein FliM compare
PFR28_02785 +0.6 1.6 hypothetical protein compare
PFR28_00555 +0.6 2.8 Inner membrane protein YbaN compare
PFR28_00849 +0.6 5.2 Flagellar biosynthesis protein FlhA compare
PFR28_05184 +0.6 2.3 Lipopolysaccharide export system ATP-binding protein LptB compare
PFR28_00825 +0.6 4.6 B-type flagellar hook-associated protein 2 compare
PFR28_00823 +0.6 4.6 Flagellin compare
PFR28_00054 +0.6 0.7 hypothetical protein compare
PFR28_01723 +0.6 1.6 Response regulator receiver protein CpdR compare
PFR28_02138 +0.6 2.7 hypothetical protein compare
PFR28_01326 +0.6 0.9 HTH-type transcriptional regulator GltC compare
PFR28_05041 +0.6 1.7 Thioredoxin 2 compare
PFR28_01587 +0.6 1.3 hypothetical protein compare
PFR28_00471 +0.6 1.2 Nicotinamide-nucleotide amidohydrolase PncC compare
PFR28_01600 +0.6 1.2 HTH-type transcriptional regulator KdgR compare
PFR28_00805 +0.6 4.0 Flagellar basal-body rod protein FlgG compare
PFR28_00845 +0.6 3.3 Flagellar biosynthetic protein FliP compare
PFR28_02879 +0.6 4.7 Ferric-pseudobactin 358 receptor compare
PFR28_01768 +0.6 2.0 hypothetical protein compare
PFR28_02100 +0.6 1.0 hypothetical protein compare
PFR28_03161 +0.5 0.9 tRNA-Arg compare
PFR28_03052 +0.5 1.2 hypothetical protein compare
PFR28_02525 +0.5 2.7 hypothetical protein compare
PFR28_00007 +0.5 1.2 RecBCD enzyme subunit RecB compare
PFR28_03918 +0.5 1.8 L-threonine 3-dehydrogenase compare
PFR28_03132 +0.5 1.1 putative DNA endonuclease SmrA compare
PFR28_00464 +0.5 1.3 hypothetical protein compare
PFR28_00804 +0.5 3.7 Flagellar basal-body rod protein FlgF compare
PFR28_00444 +0.5 1.8 hypothetical protein compare
PFR28_02788 +0.5 1.5 hypothetical protein compare
PFR28_02562 +0.5 1.9 hypothetical protein compare
PFR28_03729 +0.5 1.8 hypothetical protein compare
PFR28_02455 +0.5 1.3 hypothetical protein compare
PFR28_02021 +0.5 1.1 FMN reductase (NADH) RutF compare
PFR28_05193 +0.5 1.9 hypothetical protein compare
PFR28_05173 +0.5 2.1 hypothetical protein compare
PFR28_01425 +0.5 1.5 hypothetical protein compare
PFR28_02590 +0.5 1.3 hypothetical protein compare
PFR28_05079 +0.5 3.5 hypothetical protein compare
PFR28_04323 +0.5 3.4 hypothetical protein compare
PFR28_02718 +0.5 2.5 hypothetical protein compare
PFR28_00473 +0.5 1.0 Regulatory protein RecX compare
PFR28_00840 +0.5 3.8 hypothetical protein compare
PFR28_04222 +0.5 1.2 '2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase' transl_table=11 compare
PFR28_00455 +0.5 2.2 hypothetical protein compare
PFR28_03880 +0.5 2.0 hypothetical protein compare
PFR28_00808 +0.5 3.4 hypothetical protein compare
PFR28_00847 +0.5 3.3 Flagellar biosynthetic protein FliR compare
PFR28_03252 +0.5 3.2 Basal-body rod modification protein FlgD compare
PFR28_05024 +0.5 1.3 hypothetical protein compare
PFR28_02050 +0.5 2.0 hypothetical protein compare
PFR28_00766 +0.5 1.3 hypothetical protein compare
PFR28_01976 +0.5 2.0 hypothetical protein compare
PFR28_00493 +0.5 1.8 hypothetical protein compare
PFR28_01903 +0.5 2.3 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
PFR28_02579 +0.5 1.8 hypothetical protein compare
PFR28_03521 +0.5 1.2 DNA repair protein RecO compare
PFR28_00126 +0.5 1.0 Dipeptide transport system permease protein DppC compare
PFR28_00342 +0.5 1.8 hypothetical protein compare
PFR28_00688 +0.5 0.7 hypothetical protein compare
PFR28_02386 +0.5 1.3 Protein hcp1 compare
PFR28_00810 +0.5 3.9 hypothetical protein compare
PFR28_03145 +0.5 1.7 allantoicase compare
PFR28_02711 +0.5 1.8 hypothetical protein compare
PFR28_04138 +0.5 2.6 hypothetical protein compare
PFR28_04866 +0.5 1.3 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
PFR28_01034 +0.5 2.1 Protein MbtH compare
PFR28_00990 +0.5 1.0 Free methionine-R-sulfoxide reductase compare
PFR28_05071 +0.4 1.2 D-inositol-3-phosphate glycosyltransferase compare
PFR28_00041 +0.4 1.3 Leucine-responsive regulatory protein compare
PFR28_01339 +0.4 2.3 hypothetical protein compare
PFR28_01194 +0.4 1.4 hypothetical protein compare
PFR28_01610 +0.4 1.9 hypothetical protein compare
PFR28_02564 +0.4 1.7 hypothetical protein compare
PFR28_00968 +0.4 0.7 hypothetical protein compare
PFR28_03291 +0.4 1.3 hypothetical protein compare
PFR28_01807 +0.4 1.7 Hydrazine synthase subunit beta compare
PFR28_02763 +0.4 0.7 hypothetical protein compare
PFR28_01322 +0.4 1.3 HTH-type transcriptional regulator LutR compare
PFR28_01138 +0.4 0.9 Phosphonoacetaldehyde hydrolase compare
PFR28_01184 +0.4 2.8 hypothetical protein compare
PFR28_04548 +0.4 1.7 Ubiquinone biosynthesis O-methyltransferase, mitochondrial compare
PFR28_01748 +0.4 0.9 hypothetical protein compare
PFR28_01566 +0.4 1.3 Arsenic resistance transcriptional regulator ArsR1 compare
PFR28_01616 +0.4 1.3 HTH-type transcriptional regulator YofA compare
PFR28_02356 +0.4 1.8 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
PFR28_03875 +0.4 0.7 hypothetical protein compare
PFR28_04677 +0.4 1.9 2-hydroxy-6-oxononadienedioate/2-hydroxy-6- oxononatrienedioate hydrolase compare
PFR28_01176 +0.4 1.1 hypothetical protein compare
PFR28_02423 +0.4 2.6 5-deoxy-glucuronate isomerase compare
PFR28_01327 +0.4 2.1 Protein YciE compare
PFR28_03386 +0.4 1.9 Major cold shock protein CspA compare
PFR28_00511 +0.4 1.5 Isochorismatase family protein YecD compare
PFR28_01162 +0.4 1.9 hypothetical protein compare
PFR28_04023 +0.4 1.4 Bifunctional ligase/repressor BirA compare
PFR28_04194 +0.4 1.5 hypothetical protein compare
PFR28_03362 +0.4 0.8 hypothetical protein compare
PFR28_01334 +0.4 1.0 hypothetical protein compare
PFR28_00941 +0.4 0.6 Potassium-transporting ATPase KdpC subunit compare
PFR28_01933 +0.4 0.5 Putative tartrate transporter compare
PFR28_01982 +0.4 2.3 tRNA (adenine(22)-N(1))-methyltransferase compare
PFR28_02241 +0.4 1.2 Copper-binding lipoprotein NosL compare
PFR28_05223 +0.4 1.7 Methyl-accepting chemotaxis protein CtpL compare
PFR28_00033 +0.4 0.8 hypothetical protein compare
PFR28_04556 +0.4 2.0 hypothetical protein compare
PFR28_00097 +0.4 2.2 hypothetical protein compare
PFR28_01330 +0.4 0.5 Glucose starvation-inducible protein B compare
PFR28_04681 +0.4 0.9 hypothetical protein compare
PFR28_02217 +0.4 1.4 'Pyridoxine/pyridoxamine 5'-phosphate oxidase' transl_table=11 compare
PFR28_03810 +0.4 1.2 3-dehydroquinate dehydratase 1 compare
PFR28_04693 +0.4 1.3 hypothetical protein compare
PFR28_02330 +0.4 1.4 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase compare
PFR28_04184 +0.4 1.6 hypothetical protein compare
PFR28_00948 +0.4 0.9 hypothetical protein compare
PFR28_02891 +0.4 0.9 HTH-type transcriptional regulator CdhR compare
PFR28_02486 +0.4 0.7 hypothetical protein compare
PFR28_04707 +0.4 1.9 hypothetical protein compare
PFR28_01025 +0.4 1.4 hypothetical protein compare
PFR28_04481 +0.4 2.0 hypothetical protein compare
PFR28_05160 +0.4 1.0 hypothetical protein compare
PFR28_00781 +0.4 1.8 Type I secretion system membrane fusion protein PrsE compare
PFR28_03768 +0.4 1.9 hypothetical protein compare
PFR28_01398 +0.4 1.0 hypothetical protein compare
PFR28_01598 +0.4 1.8 2-dehydro-3-deoxygluconokinase compare
PFR28_00590 +0.4 1.3 hypothetical protein compare
PFR28_02874 +0.4 1.7 hypothetical protein compare
PFR28_03272 +0.4 0.9 Translational regulator CsrA2 compare
PFR28_03392 +0.4 2.1 Copper resistance protein D compare
PFR28_01328 +0.4 1.7 hypothetical protein compare
PFR28_04426 +0.4 1.7 hypothetical protein compare
PFR28_00470 +0.4 2.2 hypothetical protein compare
PFR28_03739 +0.4 1.0 hypothetical protein compare
PFR28_04972 +0.4 1.6 Imidazolonepropionase compare
PFR28_02384 +0.4 2.0 hypothetical protein compare
PFR28_03071 +0.4 2.2 hypothetical protein compare
PFR28_05181 +0.4 0.8 Urease subunit gamma compare
PFR28_00938 +0.4 0.8 hypothetical protein compare
PFR28_01913 +0.4 1.7 hypothetical protein compare
PFR28_01011 +0.4 1.4 hypothetical protein compare
PFR28_01427 +0.4 1.1 hypothetical protein compare
PFR28_00335 +0.4 1.7 Virulence sensor protein BvgS compare
PFR28_04921 +0.4 0.6 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Carnitine hydrochloride in Pseudomonas sp. RS175

For carbon source L-Carnitine hydrochloride across organisms