Experiment set5S205 for Pseudomonas sp. RS175

Compare to:

mixed carbon sources Trisodium citrate dihydrate 10 mM and L-Phenylalanine 5 mM

200 most important genes:

  gene name fitness t score description  
PFR28_04252 -5.9 -8.1 Thiazole synthase compare
PFR28_00098 -5.4 -3.7 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_03388 -5.3 -3.7 Quinolinate synthase A compare
PFR28_03653 -5.0 -5.4 Molybdopterin-synthase adenylyltransferase compare
PFR28_05091 -4.9 -21.1 Phosphomethylpyrimidine synthase compare
PFR28_04071 -4.7 -2.3 Multifunctional CCA protein compare
PFR28_00222 -4.5 -21.6 hypothetical protein compare
PFR28_03844 -4.4 -7.2 Thiamine-phosphate synthase compare
PFR28_00223 -4.3 -7.6 Maleylpyruvate isomerase conserved
PFR28_03843 -4.2 -8.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_04246 -4.0 -3.9 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_03012 -3.8 -8.0 Phosphate acyltransferase compare
PFR28_04245 -3.8 -2.6 Homoserine O-succinyltransferase compare
PFR28_02810 -3.7 -2.6 O-succinylhomoserine sulfhydrylase compare
PFR28_00681 -3.7 -13.0 hypothetical protein compare
PFR28_04834 -3.6 -4.3 L-threonine dehydratase biosynthetic IlvA compare
PFR28_00193 -3.6 -6.9 Sulfate adenylyltransferase subunit 2 compare
PFR28_00683 -3.5 -6.9 Transcriptional regulatory protein tctD compare
PFR28_00194 -3.4 -5.6 Bifunctional enzyme CysN/CysC compare
PFR28_05125 -3.3 -2.3 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_00188 -3.2 -3.8 Histidinol-phosphate aminotransferase compare
PFR28_00960 -3.2 -7.0 hypothetical protein compare
PFR28_05015 -2.9 -3.4 Glutamate synthase [NADPH] large chain compare
PFR28_03363 -2.9 -4.4 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_02608 -2.8 -2.6 DNA translocase FtsK compare
PFR28_04832 -2.7 -3.2 putative phosphatase compare
PFR28_00186 -2.7 -1.8 ATP phosphoribosyltransferase compare
PFR28_00918 -2.7 -9.4 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_03429 -2.6 -9.3 Thiamine-phosphate synthase compare
PFR28_05016 -2.5 -2.5 Glutamate synthase [NADPH] small chain compare
PFR28_04985 -2.5 -1.7 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_01366 -2.5 -3.0 Sulfite reductase [ferredoxin] compare
PFR28_00966 -2.5 -3.8 HTH-type transcriptional regulator CysB compare
PFR28_04930 -2.5 -1.7 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_04986 -2.5 -1.7 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_03697 -2.4 -2.4 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_00089 -2.4 -1.4 Transcription termination/antitermination protein NusA compare
PFR28_00928 -2.4 -3.4 putative sugar transferase EpsL compare
PFR28_04929 -2.3 -1.6 Histidine biosynthesis bifunctional protein HisB compare
PFR28_04103 -2.3 -4.9 Biotin synthase compare
PFR28_04278 -2.3 -1.6 Dihydroxy-acid dehydratase compare
PFR28_01365 -2.3 -1.6 hypothetical protein compare
PFR28_00159 -2.3 -4.8 hypothetical protein compare
PFR28_00684 -2.3 -15.0 Sensor protein QseC compare
PFR28_00689 -2.2 -16.7 L-aspartate oxidase compare
PFR28_04874 -2.2 -11.6 Phosphoenolpyruvate carboxykinase (ATP) compare
PFR28_04418 -2.2 -1.5 Exodeoxyribonuclease compare
PFR28_01319 -2.1 -11.0 1,4-alpha-glucan branching enzyme GlgB compare
PFR28_05205 -2.1 -3.3 Precorrin-8X methylmutase compare
PFR28_00068 -2.0 -1.8 hypothetical protein compare
PFR28_03724 -2.0 -5.8 Glucose-6-phosphate isomerase compare
PFR28_00305 -2.0 -5.9 2-isopropylmalate synthase compare
PFR28_03596 -2.0 -3.0 Transcriptional regulator MraZ compare
PFR28_04425 -1.9 -10.1 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_01777 -1.9 -2.1 putative trans-3-hydroxy-L-proline dehydratase compare
PFR28_04932 -1.9 -1.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_02824 -1.9 -1.3 3-isopropylmalate dehydratase large subunit compare
PFR28_04933 -1.9 -1.3 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_01182 -1.9 -3.6 hypothetical protein compare
PFR28_02603 -1.9 -1.8 Siroheme synthase compare
PFR28_03218 -1.8 -1.7 Phosphoribosylglycinamide formyltransferase compare
PFR28_03865 -1.8 -5.8 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_02821 -1.8 -1.8 3-isopropylmalate dehydrogenase compare
PFR28_03698 -1.8 -1.7 Acetolactate synthase isozyme 3 small subunit compare
PFR28_03413 -1.8 -3.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_01181 -1.8 -8.7 hypothetical protein compare
PFR28_03209 -1.8 -4.4 Corrinoid adenosyltransferase compare
PFR28_00180 -1.8 -6.6 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_05105 -1.7 -1.2 Phosphoserine phosphatase SerB2 compare
PFR28_02823 -1.7 -1.1 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_03846 -1.7 -6.5 hypothetical protein compare
PFR28_00179 -1.7 -7.8 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_03414 -1.7 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_04945 -1.7 -6.9 Sensory histidine kinase/phosphatase NtrB compare
PFR28_01139 -1.6 -11.8 Intermembrane phospholipid transport system lipoprotein MlaA compare
PFR28_02484 -1.6 -1.5 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_04842 -1.6 -3.7 D-3-phosphoglycerate dehydrogenase compare
PFR28_01142 -1.6 -6.5 Transaldolase compare
PFR28_00181 -1.6 -8.8 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_00182 -1.6 -8.6 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_04830 -1.6 -10.2 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_04489 -1.6 -7.0 Phosphate-binding protein PstS compare
PFR28_04958 -1.6 -1.8 hypothetical protein compare
PFR28_03430 -1.6 -5.3 Arginine biosynthesis bifunctional protein ArgJ compare
PFR28_03412 -1.5 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_01378 -1.4 -2.8 Magnesium-chelatase 38 kDa subunit compare
PFR28_00331 -1.4 -4.7 Tyrosine recombinase XerD compare
PFR28_03478 -1.4 -8.6 HTH-type transcriptional regulator MetR compare
PFR28_04887 -1.4 -2.9 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_03714 -1.4 -8.8 RNA polymerase-binding transcription factor DksA compare
PFR28_04944 -1.4 -5.0 DNA-binding transcriptional regulator NtrC compare
PFR28_01369 -1.3 -6.3 Methionine synthase compare
PFR28_03282 -1.3 -4.0 Arginine N-succinyltransferase subunit alpha compare
PFR28_00169 -1.3 -5.3 Phosphocarrier protein NPr compare
PFR28_05199 -1.3 -4.5 Precorrin-6A reductase compare
PFR28_00296 -1.3 -2.6 Cytoskeleton protein RodZ compare
PFR28_00393 -1.3 -9.1 LL-diaminopimelate aminotransferase compare
PFR28_05212 -1.3 -5.4 Sensor histidine kinase RcsC compare
PFR28_01410 -1.3 -10.4 Response regulator GacA compare
PFR28_05207 -1.3 -5.2 Siroheme synthase compare
PFR28_01184 -1.2 -6.6 hypothetical protein compare
PFR28_05042 -1.2 -2.2 hypothetical protein compare
PFR28_03204 -1.2 -5.3 Cobyric acid synthase compare
PFR28_04902 -1.2 -3.2 Inner membrane protein YgaZ compare
PFR28_00184 -1.2 -3.1 hypothetical protein compare
PFR28_05206 -1.2 -6.8 Precorrin-2 C(20)-methyltransferase compare
PFR28_04714 -1.2 -6.0 HTH-type transcriptional regulator TrpI compare
PFR28_04486 -1.2 -7.4 Phosphate import ATP-binding protein PstB compare
PFR28_04488 -1.2 -9.9 hypothetical protein compare
PFR28_03612 -1.2 -1.9 Cell division protein ZapE compare
PFR28_03227 -1.2 -8.9 Signal transduction histidine-protein kinase BarA compare
PFR28_04648 -1.1 -9.9 Citrate transporter conserved
PFR28_02403 -1.1 -1.4 Na(+)/H(+) antiporter subunit C1 compare
PFR28_03202 -1.1 -1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_01113 -1.1 -2.5 DNA topoisomerase 1 compare
PFR28_02145 -1.1 -10.1 Glycogen synthase compare
PFR28_00926 -1.1 -0.7 hypothetical protein compare
PFR28_02048 -1.1 -2.8 hypothetical protein compare
PFR28_02704 -1.1 -1.1 hypothetical protein compare
PFR28_03203 -1.1 -3.7 Bifunctional adenosylcobalamin biosynthesis protein CobP compare
PFR28_02719 -1.1 -1.2 Integration host factor subunit alpha compare
PFR28_04403 -1.1 -1.9 hypothetical protein compare
PFR28_05201 -1.1 -1.8 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_05000 -1.0 -1.3 Cell division protein FtsN compare
PFR28_00424 -1.0 -5.3 '5'-nucleotidase SurE' transl_table=11 compare
PFR28_01583 -1.0 -1.6 hypothetical protein compare
PFR28_04565 -1.0 -7.5 Protein RarD compare
PFR28_03200 -1.0 -3.3 Adenosylcobinamide-GDP ribazoletransferase compare
PFR28_03753 -1.0 -5.4 Glycine oxidase compare
PFR28_04620 -1.0 -2.7 Zinc uptake regulation protein compare
PFR28_04102 -1.0 -5.0 8-amino-7-oxononanoate synthase compare
PFR28_03956 -1.0 -6.2 putative ABC transporter ATP-binding protein conserved
PFR28_03208 -1.0 -5.4 Cobyrinate a,c-diamide synthase compare
PFR28_03206 -1.0 -4.7 Cobalamin biosynthesis protein CobD compare
PFR28_05079 -1.0 -7.0 hypothetical protein compare
PFR28_05071 -1.0 -2.3 D-inositol-3-phosphate glycosyltransferase compare
PFR28_04100 -0.9 -3.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_04208 -0.9 -3.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_05204 -0.9 -2.2 Sulfite reductase [ferredoxin] compare
PFR28_00427 -0.9 -7.1 RNA polymerase sigma factor RpoS compare
PFR28_04782 -0.9 -7.3 hypothetical protein compare
PFR28_03205 -0.9 -3.5 Histidinol-phosphate aminotransferase compare
PFR28_04521 -0.9 -2.5 HTH-type transcriptional regulator HexR compare
PFR28_04344 -0.9 -2.9 Exopolyphosphatase compare
PFR28_00695 -0.9 -0.8 Sulfur carrier protein TusA compare
PFR28_04325 -0.9 -3.2 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_01376 -0.9 -1.3 hypothetical protein compare
PFR28_03957 -0.8 -5.9 hypothetical protein conserved
PFR28_02688 -0.8 -2.1 hypothetical protein compare
PFR28_00839 -0.8 -2.6 hypothetical protein compare
PFR28_01372 -0.8 -1.8 Precorrin-4 C(11)-methyltransferase compare
PFR28_00602 -0.8 -0.7 hypothetical protein compare
PFR28_01377 -0.8 -5.0 Aerobic cobaltochelatase subunit CobN compare
PFR28_00472 -0.8 -1.8 Protein RecA compare
PFR28_05118 -0.8 -3.0 N-acetylmuramoyl-L-alanine amidase AmiC compare
PFR28_02475 -0.8 -6.3 4-hydroxyphenylpyruvate dioxygenase conserved
PFR28_03427 -0.8 -2.6 Sensor histidine kinase RcsC compare
PFR28_00480 -0.8 -3.8 HTH-type transcriptional activator CmpR compare
PFR28_01917 -0.8 -2.0 Glutamine transport ATP-binding protein GlnQ compare
PFR28_02616 -0.8 -6.5 Isocitrate dehydrogenase [NADP] compare
PFR28_01077 -0.8 -3.2 Recombination protein RecR compare
PFR28_00187 -0.8 -0.5 Histidinol dehydrogenase compare
PFR28_03775 -0.8 -3.0 hypothetical protein compare
PFR28_01060 -0.7 -2.2 HTH-type transcriptional repressor NanR compare
PFR28_05216 -0.7 -3.8 tRNA-dihydrouridine synthase B compare
PFR28_01744 -0.7 -2.7 hypothetical protein compare
PFR28_04378 -0.7 -2.2 Tyrosine recombinase XerC compare
PFR28_04491 -0.7 -3.7 putative acyl-CoA thioester hydrolase compare
PFR28_02822 -0.7 -2.8 putative methyltransferase YcgJ compare
PFR28_02812 -0.7 -2.0 hypothetical protein compare
PFR28_00837 -0.7 -5.0 hypothetical protein compare
PFR28_03955 -0.7 -2.2 hypothetical protein compare
PFR28_04396 -0.7 -3.2 HTH-type transcriptional regulator PuuR compare
PFR28_02449 -0.7 -3.5 putative branched-chain-amino-acid aminotransferase compare
PFR28_02894 -0.7 -2.4 putative oxidoreductase compare
PFR28_04110 -0.7 -4.6 Malate synthase G compare
PFR28_00945 -0.7 -1.4 hypothetical protein compare
PFR28_04903 -0.7 -2.4 hypothetical protein compare
PFR28_04120 -0.7 -1.4 hypothetical protein compare
PFR28_02231 -0.7 -2.7 Cytochrome c-551 compare
PFR28_04487 -0.7 -4.5 hypothetical protein compare
PFR28_02486 -0.7 -1.5 hypothetical protein compare
PFR28_02933 -0.7 -5.2 Aminodeoxychorismate synthase component 1 compare
PFR28_03007 -0.7 -4.6 Aminodeoxychorismate lyase compare
PFR28_01749 -0.7 -1.8 hypothetical protein compare
PFR28_00356 -0.7 -4.0 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_00405 -0.7 -1.2 hypothetical protein compare
PFR28_03634 -0.7 -2.4 hypothetical protein compare
PFR28_02289 -0.7 -1.8 HTH-type transcriptional repressor NicS compare
PFR28_03666 -0.7 -1.0 hypothetical protein compare
PFR28_03310 -0.6 -2.1 Peptidyl-tRNA hydrolase ArfB compare
PFR28_02830 -0.6 -2.0 Putative aminoacrylate hydrolase RutD compare
PFR28_03719 -0.6 -2.7 Poly(A) polymerase I compare
PFR28_04335 -0.6 -3.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PFR28_00756 -0.6 -1.6 ATP-dependent RNA helicase RhlE compare
PFR28_05104 -0.6 -1.4 hypothetical protein compare
PFR28_04992 -0.6 -0.4 hypothetical protein compare
PFR28_03573 -0.6 -3.9 Toluene efflux pump outer membrane protein TtgI compare
PFR28_01122 -0.6 -3.0 hypothetical protein compare
PFR28_03192 -0.6 -1.5 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas sp. RS175

For mixed carbon source Trisodium citrate dihydrate across organisms