Experiment set5S199 for Pseudomonas sp. RS175

Compare to:

mixed carbon sources Trisodium citrate dihydrate 10 mM and L-tyrosine disodium salt 5 mM

200 most detrimental genes:

  gene name fitness t score description  
PFR28_00535 +1.3 2.0 hypothetical protein compare
PFR28_00688 +1.2 1.6 hypothetical protein compare
PFR28_01881 +1.2 2.9 putative oxidoreductase compare
PFR28_02094 +1.0 1.9 Glycerol-3-phosphate regulon repressor compare
PFR28_01661 +0.9 1.5 Delta(1)-pyrroline-2-carboxylate/Delta(1)- piperideine-2-carboxylate reductase compare
PFR28_02553 +0.9 3.1 hypothetical protein compare
PFR28_00828 +0.9 8.2 Anaerobic nitric oxide reductase transcription regulator NorR compare
PFR28_00033 +0.9 2.8 hypothetical protein compare
PFR28_01431 +0.9 1.8 Chemotaxis protein CheW compare
PFR28_00473 +0.9 1.7 Regulatory protein RecX compare
PFR28_01460 +0.8 1.1 Glutamine transport ATP-binding protein GlnQ compare
PFR28_00844 +0.8 2.0 hypothetical protein compare
PFR28_00807 +0.7 4.2 Flagellar P-ring protein compare
PFR28_00304 +0.7 1.5 hypothetical protein compare
PFR28_02232 +0.7 1.8 hypothetical protein compare
PFR28_03257 +0.7 4.4 hypothetical protein compare
PFR28_01450 +0.7 1.3 hypothetical protein compare
PFR28_03324 +0.7 2.7 hypothetical protein compare
PFR28_04939 +0.6 2.1 putative protein YibN compare
PFR28_02201 +0.6 1.2 Chaperone SurA compare
PFR28_00833 +0.6 4.8 Flagellar motor switch protein FliG compare
PFR28_03344 +0.6 1.0 Ion-translocating oxidoreductase complex subunit A compare
PFR28_00846 +0.6 5.3 Flagellar biosynthetic protein FliQ compare
PFR28_03259 +0.6 2.2 hypothetical protein compare
PFR28_02492 +0.6 1.8 Alpha-ketoglutarate-dependent dioxygenase AlkB compare
PFR28_01347 +0.6 1.8 hypothetical protein compare
PFR28_02718 +0.6 3.2 hypothetical protein compare
PFR28_03805 +0.6 2.8 Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA compare
PFR28_00995 +0.6 1.5 hypothetical protein compare
PFR28_00990 +0.6 1.5 Free methionine-R-sulfoxide reductase compare
PFR28_05223 +0.6 2.2 Methyl-accepting chemotaxis protein CtpL compare
PFR28_02891 +0.6 1.7 HTH-type transcriptional regulator CdhR compare
PFR28_02100 +0.6 1.7 hypothetical protein compare
PFR28_01748 +0.5 1.2 hypothetical protein compare
PFR28_03253 +0.5 4.6 Flagellar basal-body rod protein FlgC compare
PFR28_03272 +0.5 1.4 Translational regulator CsrA2 compare
PFR28_00836 +0.5 4.3 Flagellar FliJ protein compare
PFR28_05134 +0.5 1.1 hypothetical protein compare
PFR28_05246 +0.5 1.8 hypothetical protein compare
PFR28_00840 +0.5 4.1 hypothetical protein compare
PFR28_04721 +0.5 1.1 hypothetical protein compare
PFR28_02874 +0.5 2.4 hypothetical protein compare
PFR28_00831 +0.5 4.4 Flagellar hook-basal body complex protein FliE compare
PFR28_01858 +0.5 2.1 'Inosine-5'-monophosphate dehydrogenase' transl_table=11 compare
PFR28_00941 +0.5 0.9 Potassium-transporting ATPase KdpC subunit compare
PFR28_03729 +0.5 1.7 hypothetical protein compare
PFR28_00852 +0.5 4.4 RNA polymerase sigma factor FliA compare
PFR28_01751 +0.5 2.1 putative type II secretion system protein HxcR compare
PFR28_02704 +0.5 0.7 hypothetical protein compare
PFR28_00849 +0.5 4.5 Flagellar biosynthesis protein FlhA compare
PFR28_04709 +0.5 1.1 Peroxiredoxin OsmC compare
PFR28_00832 +0.5 4.1 Flagellar M-ring protein compare
PFR28_01326 +0.5 1.2 HTH-type transcriptional regulator GltC compare
PFR28_03251 +0.5 4.3 Flagellar hook protein FlgE compare
PFR28_03513 +0.5 1.9 hypothetical protein compare
PFR28_02841 +0.5 0.8 hypothetical protein compare
PFR28_04978 +0.5 3.3 Glucans biosynthesis protein G compare
PFR28_03254 +0.5 3.3 Flagellar basal body rod protein FlgB compare
PFR28_00148 +0.5 1.6 hypothetical protein compare
PFR28_04262 +0.4 1.8 Ribosomal RNA small subunit methyltransferase D compare
PFR28_00007 +0.4 1.0 RecBCD enzyme subunit RecB compare
PFR28_04839 +0.4 1.9 hypothetical protein compare
PFR28_00626 +0.4 1.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PFR28_02205 +0.4 1.3 hypothetical protein compare
PFR28_00834 +0.4 4.1 hypothetical protein compare
PFR28_00835 +0.4 4.1 Flagellum-specific ATP synthase compare
PFR28_00493 +0.4 1.8 hypothetical protein compare
PFR28_00948 +0.4 1.2 hypothetical protein compare
PFR28_04635 +0.4 1.2 hypothetical protein compare
PFR28_00847 +0.4 2.4 Flagellar biosynthetic protein FliR compare
PFR28_00503 +0.4 1.4 Histidine transport ATP-binding protein HisP compare
PFR28_02785 +0.4 1.2 hypothetical protein compare
PFR28_01594 +0.4 1.3 hypothetical protein compare
PFR28_02562 +0.4 1.5 hypothetical protein compare
PFR28_00766 +0.4 1.0 hypothetical protein compare
PFR28_01668 +0.4 1.8 hypothetical protein compare
PFR28_02236 +0.4 1.4 hypothetical protein compare
PFR28_02112 +0.4 2.2 hypothetical protein compare
PFR28_02937 +0.4 2.5 Hydantoin racemase compare
PFR28_05027 +0.4 2.1 hypothetical protein compare
PFR28_00806 +0.4 3.3 Flagellar L-ring protein compare
PFR28_00938 +0.4 1.4 hypothetical protein compare
PFR28_00056 +0.4 1.6 hypothetical protein compare
PFR28_02763 +0.4 0.8 hypothetical protein compare
PFR28_02358 +0.4 1.4 hypothetical protein compare
PFR28_03070 +0.4 1.9 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase compare
PFR28_03233 +0.4 1.8 NAD(P)H dehydrogenase (quinone) compare
PFR28_00848 +0.4 3.3 Flagellar biosynthetic protein FlhB compare
PFR28_04791 +0.4 2.0 Nitrate import ATP-binding protein NrtD compare
PFR28_00590 +0.4 1.6 hypothetical protein compare
PFR28_03291 +0.4 1.5 hypothetical protein compare
PFR28_01990 +0.4 1.6 Ycf48-like protein compare
PFR28_00968 +0.4 0.8 hypothetical protein compare
PFR28_03015 +0.4 2.0 7-methyl-GTP pyrophosphatase compare
PFR28_01874 +0.4 1.6 hypothetical protein compare
PFR28_01600 +0.4 0.7 HTH-type transcriptional regulator KdgR compare
PFR28_00718 +0.4 1.3 hypothetical protein compare
PFR28_03175 +0.4 2.8 FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase compare
PFR28_03781 +0.4 2.2 hypothetical protein compare
PFR28_05182 +0.4 1.6 Urease accessory protein UreD compare
PFR28_00804 +0.4 2.7 Flagellar basal-body rod protein FlgF compare
PFR28_00498 +0.4 1.1 Cold shock protein CapB compare
PFR28_01865 +0.4 1.9 hypothetical protein compare
PFR28_02788 +0.4 1.3 hypothetical protein compare
PFR28_04323 +0.4 2.6 hypothetical protein compare
PFR28_01039 +0.4 2.3 hypothetical protein compare
PFR28_04538 +0.4 2.4 hypothetical protein compare
PFR28_00205 +0.4 1.5 hypothetical protein compare
PFR28_02330 +0.4 1.8 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase compare
PFR28_05232 +0.4 1.4 hypothetical protein compare
PFR28_03452 +0.4 2.2 hypothetical protein compare
PFR28_04172 +0.4 1.5 ATP-dependent RNA helicase DbpA compare
PFR28_03145 +0.4 1.4 allantoicase compare
PFR28_04675 +0.4 0.5 hypothetical protein compare
PFR28_01216 +0.4 2.4 Transcriptional activator protein NhaR compare
PFR28_00842 +0.4 3.2 Flagellar motor switch protein FliM compare
PFR28_03616 +0.4 1.6 Methylated-DNA--protein-cysteine methyltransferase compare
PFR28_01760 +0.4 1.8 hypothetical protein compare
PFR28_00808 +0.4 2.8 hypothetical protein compare
PFR28_02138 +0.4 1.8 hypothetical protein compare
PFR28_03386 +0.4 1.8 Major cold shock protein CspA compare
PFR28_02307 +0.4 1.4 hypothetical protein compare
PFR28_00850 +0.4 2.8 Signal recognition particle 54 kDa protein compare
PFR28_04224 +0.4 1.2 hypothetical protein compare
PFR28_01909 +0.4 1.4 Serine 3-dehydrogenase compare
PFR28_01505 +0.4 1.6 putative protein YesE compare
PFR28_02912 +0.4 1.4 hypothetical protein compare
PFR28_05163 +0.4 1.5 Urease accessory protein UreE compare
PFR28_00027 +0.4 2.2 hypothetical protein compare
PFR28_00730 +0.4 1.0 5-oxoprolinase subunit C compare
PFR28_00602 +0.4 0.5 hypothetical protein compare
PFR28_02001 +0.4 1.7 HTH-type transcriptional regulator DmlR compare
PFR28_01587 +0.4 0.7 hypothetical protein compare
PFR28_01014 +0.4 0.8 Pyrimidine/purine nucleoside phosphorylase compare
PFR28_01976 +0.4 1.4 hypothetical protein compare
PFR28_00511 +0.4 1.5 Isochorismatase family protein YecD compare
PFR28_02892 +0.4 2.0 Isonitrile hydratase compare
PFR28_02057 +0.4 0.8 2-oxo-tetronate isomerase compare
PFR28_05067 +0.3 0.9 hypothetical protein compare
PFR28_04358 +0.3 1.0 hypothetical protein compare
PFR28_03252 +0.3 2.8 Basal-body rod modification protein FlgD compare
PFR28_01023 +0.3 1.9 hypothetical protein compare
PFR28_01258 +0.3 1.4 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
PFR28_02872 +0.3 0.6 hypothetical protein compare
PFR28_00392 +0.3 1.5 Sodium, potassium, lithium and rubidium/H(+) antiporter compare
PFR28_05036 +0.3 0.6 Acyl carrier protein compare
PFR28_02918 +0.3 1.7 hypothetical protein compare
PFR28_03071 +0.3 2.3 hypothetical protein compare
PFR28_01438 +0.3 1.9 Cyclic di-GMP phosphodiesterase response regulator RpfG compare
PFR28_04777 +0.3 1.3 hypothetical protein compare
PFR28_00809 +0.3 3.1 hypothetical protein compare
PFR28_01917 +0.3 1.1 Glutamine transport ATP-binding protein GlnQ compare
PFR28_01221 +0.3 1.3 hypothetical protein compare
PFR28_04866 +0.3 1.1 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
PFR28_01960 +0.3 1.0 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase compare
PFR28_03053 +0.3 1.4 hypothetical protein compare
PFR28_01240 +0.3 2.4 putative transcriptional regulatory protein compare
PFR28_01294 +0.3 1.0 hypothetical protein compare
PFR28_03637 +0.3 1.5 hypothetical protein compare
PFR28_01692 +0.3 1.7 HTH-type transcriptional regulator DmlR compare
PFR28_04485 +0.3 0.8 Phosphate-specific transport system accessory protein PhoU compare
PFR28_02513 +0.3 1.9 hypothetical protein compare
PFR28_02217 +0.3 1.7 'Pyridoxine/pyridoxamine 5'-phosphate oxidase' transl_table=11 compare
PFR28_01847 +0.3 2.1 Ribosomal RNA large subunit methyltransferase K/L compare
PFR28_03104 +0.3 1.9 hypothetical protein compare
PFR28_01332 +0.3 1.8 Zinc transporter ZupT compare
PFR28_04426 +0.3 2.0 hypothetical protein compare
PFR28_00721 +0.3 1.0 hypothetical protein compare
PFR28_03908 +0.3 1.3 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase compare
PFR28_00805 +0.3 2.3 Flagellar basal-body rod protein FlgG compare
PFR28_00671 +0.3 1.7 hypothetical protein compare
PFR28_00845 +0.3 2.6 Flagellar biosynthetic protein FliP compare
PFR28_01949 +0.3 1.5 Hca operon transcriptional activator HcaR compare
PFR28_04475 +0.3 1.9 Rubredoxin-1 compare
PFR28_01484 +0.3 2.1 Spermidine-binding periplasmic protein SpuE compare
PFR28_04979 +0.3 2.6 Glucans biosynthesis glucosyltransferase H compare
PFR28_00980 +0.3 0.4 ATP-dependent RNA helicase DeaD compare
PFR28_01616 +0.3 0.7 HTH-type transcriptional regulator YofA compare
PFR28_03877 +0.3 1.6 Holin-like protein CidA compare
PFR28_01134 +0.3 0.6 Transcriptional activator protein CopR compare
PFR28_02235 +0.3 1.6 hypothetical protein compare
PFR28_02367 +0.3 1.0 Cysteine/O-acetylserine efflux protein compare
PFR28_01768 +0.3 1.1 hypothetical protein compare
PFR28_00461 +0.3 1.4 hypothetical protein compare
PFR28_01391 +0.3 0.6 Peptidyl-prolyl cis-trans isomerase C compare
PFR28_02366 +0.3 2.1 HTH-type transcriptional activator RhaS compare
PFR28_00830 +0.3 2.3 Regulatory protein AtoC compare
PFR28_02847 +0.3 1.4 Transcriptional regulatory protein QseB compare
PFR28_02179 +0.3 1.5 Ornithine carbamoyltransferase, catabolic compare
PFR28_01807 +0.3 1.3 Hydrazine synthase subunit beta compare
PFR28_05023 +0.3 0.8 hypothetical protein compare
PFR28_00470 +0.3 1.9 hypothetical protein compare
PFR28_01315 +0.3 0.7 hypothetical protein compare
PFR28_04969 +0.3 1.3 Glycine betaine transport ATP-binding protein OpuAA compare
PFR28_01806 +0.3 1.0 Linearmycin resistance ATP-binding protein LnrL compare
PFR28_01336 +0.3 2.1 Homospermidine synthase compare
PFR28_03066 +0.3 1.0 Adaptive-response sensory-kinase SasA compare
PFR28_02021 +0.3 0.9 FMN reductase (NADH) RutF compare
PFR28_04822 +0.3 1.9 Multidrug resistance protein MdtA compare
PFR28_01011 +0.3 1.3 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas sp. RS175

For mixed carbon source Trisodium citrate dihydrate across organisms