Experiment set5S195 for Pseudomonas sp. RS175

Compare to:

Trisodium citrate dihydrate 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFR28_03653 -5.9 -5.7 Molybdopterin-synthase adenylyltransferase compare
PFR28_00098 -5.4 -3.7 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_04252 -5.3 -9.5 Thiazole synthase compare
PFR28_03388 -5.3 -5.1 Quinolinate synthase A compare
PFR28_05000 -4.8 -4.2 Cell division protein FtsN compare
PFR28_04071 -4.6 -2.3 Multifunctional CCA protein compare
PFR28_03844 -4.6 -6.2 Thiamine-phosphate synthase compare
PFR28_05091 -4.3 -22.1 Phosphomethylpyrimidine synthase compare
PFR28_04246 -3.9 -4.6 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_02810 -3.7 -2.6 O-succinylhomoserine sulfhydrylase compare
PFR28_04245 -3.7 -3.6 Homoserine O-succinyltransferase compare
PFR28_04834 -3.7 -2.6 L-threonine dehydratase biosynthetic IlvA compare
PFR28_00188 -3.7 -2.5 Histidinol-phosphate aminotransferase compare
PFR28_00193 -3.6 -6.8 Sulfate adenylyltransferase subunit 2 compare
PFR28_03012 -3.6 -8.1 Phosphate acyltransferase compare
PFR28_03843 -3.4 -7.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_00683 -3.2 -6.4 Transcriptional regulatory protein tctD compare
PFR28_00681 -3.0 -13.0 hypothetical protein compare
PFR28_05125 -2.9 -2.8 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_03363 -2.9 -3.4 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_00960 -2.8 -7.1 hypothetical protein compare
PFR28_04832 -2.8 -2.7 putative phosphatase compare
PFR28_04874 -2.8 -13.5 Phosphoenolpyruvate carboxykinase (ATP) compare
PFR28_00194 -2.7 -7.0 Bifunctional enzyme CysN/CysC compare
PFR28_00186 -2.7 -1.8 ATP phosphoribosyltransferase compare
PFR28_05015 -2.6 -4.0 Glutamate synthase [NADPH] large chain compare
PFR28_04944 -2.6 -7.0 DNA-binding transcriptional regulator NtrC compare
PFR28_05016 -2.6 -2.5 Glutamate synthase [NADPH] small chain compare
PFR28_04985 -2.5 -1.7 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_02608 -2.5 -2.3 DNA translocase FtsK compare
PFR28_04986 -2.5 -1.7 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_03697 -2.5 -1.7 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_01142 -2.5 -7.0 Transaldolase compare
PFR28_02838 -2.5 -13.3 Aromatic-amino-acid aminotransferase compare
PFR28_01366 -2.5 -3.3 Sulfite reductase [ferredoxin] compare
PFR28_00159 -2.4 -2.4 hypothetical protein compare
PFR28_04425 -2.4 -10.6 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_00918 -2.4 -9.2 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_04565 -2.4 -14.6 Protein RarD compare
PFR28_04930 -2.3 -2.8 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_04929 -2.3 -1.6 Histidine biosynthesis bifunctional protein HisB compare
PFR28_00966 -2.3 -5.5 HTH-type transcriptional regulator CysB compare
PFR28_01365 -2.3 -1.6 hypothetical protein compare
PFR28_04103 -2.3 -5.2 Biotin synthase compare
PFR28_04278 -2.3 -2.2 Dihydroxy-acid dehydratase compare
PFR28_00689 -2.2 -17.4 L-aspartate oxidase compare
PFR28_00928 -2.2 -3.4 putative sugar transferase EpsL compare
PFR28_02603 -2.1 -1.5 Siroheme synthase compare
PFR28_04830 -2.1 -14.0 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_01410 -2.1 -15.0 Response regulator GacA compare
PFR28_03846 -2.1 -7.8 hypothetical protein compare
PFR28_04418 -2.0 -1.9 Exodeoxyribonuclease compare
PFR28_04945 -2.0 -6.1 Sensory histidine kinase/phosphatase NtrB compare
PFR28_03429 -2.0 -6.9 Thiamine-phosphate synthase compare
PFR28_03218 -2.0 -1.3 Phosphoribosylglycinamide formyltransferase compare
PFR28_03724 -2.0 -5.8 Glucose-6-phosphate isomerase compare
PFR28_04932 -1.9 -1.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_02824 -1.9 -1.3 3-isopropylmalate dehydratase large subunit compare
PFR28_04933 -1.9 -1.3 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_04380 -1.9 -2.1 Transcriptional regulator SutA compare
PFR28_00296 -1.9 -2.3 Cytoskeleton protein RodZ compare
PFR28_00684 -1.9 -13.4 Sensor protein QseC compare
PFR28_02719 -1.9 -2.2 Integration host factor subunit alpha compare
PFR28_02821 -1.8 -2.2 3-isopropylmalate dehydrogenase compare
PFR28_03227 -1.8 -13.1 Signal transduction histidine-protein kinase BarA compare
PFR28_00181 -1.8 -9.6 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_01139 -1.8 -12.4 Intermembrane phospholipid transport system lipoprotein MlaA compare
PFR28_00180 -1.8 -7.2 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_01181 -1.8 -8.0 hypothetical protein compare
PFR28_02823 -1.8 -1.1 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_00305 -1.8 -5.9 2-isopropylmalate synthase compare
PFR28_00695 -1.7 -1.1 Sulfur carrier protein TusA compare
PFR28_01182 -1.7 -3.3 hypothetical protein compare
PFR28_00182 -1.7 -8.8 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_00179 -1.7 -7.8 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_03698 -1.7 -2.3 Acetolactate synthase isozyme 3 small subunit compare
PFR28_01319 -1.7 -9.6 1,4-alpha-glucan branching enzyme GlgB compare
PFR28_00068 -1.7 -1.7 hypothetical protein compare
PFR28_02484 -1.6 -1.6 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_05105 -1.6 -2.2 Phosphoserine phosphatase SerB2 compare
PFR28_04040 -1.6 -3.8 Protein YhfA compare
PFR28_04648 -1.6 -13.2 Citrate transporter conserved
PFR28_03282 -1.6 -3.9 Arginine N-succinyltransferase subunit alpha compare
PFR28_00089 -1.6 -1.7 Transcription termination/antitermination protein NusA compare
PFR28_03714 -1.5 -9.5 RNA polymerase-binding transcription factor DksA compare
PFR28_03865 -1.5 -5.1 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_04887 -1.5 -2.9 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_04489 -1.5 -6.8 Phosphate-binding protein PstS compare
PFR28_03412 -1.5 -4.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_01378 -1.4 -2.9 Magnesium-chelatase 38 kDa subunit compare
PFR28_03478 -1.4 -8.2 HTH-type transcriptional regulator MetR compare
PFR28_03666 -1.4 -1.7 hypothetical protein compare
PFR28_00169 -1.4 -3.1 Phosphocarrier protein NPr compare
PFR28_03612 -1.4 -2.2 Cell division protein ZapE compare
PFR28_04486 -1.3 -8.2 Phosphate import ATP-binding protein PstB compare
PFR28_02009 -1.3 -1.9 HTH-type transcriptional regulator PgrR compare
PFR28_02703 -1.3 -2.3 hypothetical protein compare
PFR28_01184 -1.3 -6.6 hypothetical protein compare
PFR28_04521 -1.3 -3.4 HTH-type transcriptional regulator HexR compare
PFR28_02145 -1.3 -11.8 Glycogen synthase compare
PFR28_01362 -1.2 -1.3 hypothetical protein compare
PFR28_03191 -1.2 -1.4 hypothetical protein compare
PFR28_05212 -1.2 -5.3 Sensor histidine kinase RcsC compare
PFR28_01369 -1.2 -5.7 Methionine synthase compare
PFR28_04564 -1.2 -9.1 Aspartate-semialdehyde dehydrogenase compare
PFR28_00331 -1.2 -3.9 Tyrosine recombinase XerD compare
PFR28_00393 -1.2 -8.8 LL-diaminopimelate aminotransferase conserved
PFR28_04488 -1.2 -10.0 hypothetical protein compare
PFR28_00913 -1.2 -3.9 Integration host factor subunit beta compare
PFR28_02872 -1.2 -1.5 hypothetical protein compare
PFR28_04344 -1.1 -3.5 Exopolyphosphatase compare
PFR28_00839 -1.1 -3.5 hypothetical protein compare
PFR28_04325 -1.1 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_03956 -1.1 -6.1 putative ABC transporter ATP-binding protein compare
PFR28_03837 -1.1 -5.4 Leucine-responsive regulatory protein compare
PFR28_05079 -1.1 -7.9 hypothetical protein compare
PFR28_04566 -1.1 -7.8 4-chloro-allylglycine synthase compare
PFR28_01043 -1.1 -2.7 hypothetical protein compare
PFR28_03957 -1.1 -6.7 hypothetical protein compare
PFR28_04102 -1.1 -5.3 8-amino-7-oxononanoate synthase compare
PFR28_00460 -1.1 -3.3 hypothetical protein compare
PFR28_05120 -1.1 -7.4 tRNA dimethylallyltransferase compare
PFR28_03202 -1.1 -1.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_00926 -1.1 -0.7 hypothetical protein compare
PFR28_04902 -1.1 -3.2 Inner membrane protein YgaZ compare
PFR28_04072 -1.1 -1.7 Bifunctional folate synthesis protein compare
PFR28_03530 -1.1 -1.8 hypothetical protein compare
PFR28_00427 -1.0 -8.1 RNA polymerase sigma factor RpoS compare
PFR28_00690 -1.0 -3.8 RNA polymerase sigma-H factor compare
PFR28_00480 -1.0 -5.0 HTH-type transcriptional activator CmpR compare
PFR28_04958 -1.0 -1.7 hypothetical protein compare
PFR28_01376 -1.0 -1.1 hypothetical protein compare
PFR28_05139 -1.0 -1.4 hypothetical protein compare
PFR28_04903 -1.0 -3.2 hypothetical protein compare
PFR28_04842 -1.0 -3.3 D-3-phosphoglycerate dehydrogenase compare
PFR28_05207 -1.0 -4.2 Siroheme synthase compare
PFR28_04230 -1.0 -3.6 Response regulator PleD compare
PFR28_04623 -1.0 -4.5 hypothetical protein compare
PFR28_02268 -1.0 -1.9 hypothetical protein compare
PFR28_05199 -1.0 -3.5 Precorrin-6A reductase compare
PFR28_04208 -1.0 -3.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_04567 -0.9 -7.4 hypothetical protein compare
PFR28_00472 -0.9 -2.1 Protein RecA compare
PFR28_01113 -0.9 -1.9 DNA topoisomerase 1 compare
PFR28_03208 -0.9 -5.2 Cobyrinate a,c-diamide synthase compare
PFR28_04343 -0.9 -1.9 Glutamine transport ATP-binding protein GlnQ compare
PFR28_03430 -0.9 -3.8 Arginine biosynthesis bifunctional protein ArgJ compare
PFR28_03596 -0.9 -1.3 Transcriptional regulator MraZ compare
PFR28_01572 -0.9 -1.3 hypothetical protein compare
PFR28_05206 -0.9 -5.5 Precorrin-2 C(20)-methyltransferase compare
PFR28_03204 -0.9 -4.1 Cobyric acid synthase compare
PFR28_04100 -0.9 -3.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_03266 -0.9 -1.8 hypothetical protein compare
PFR28_01377 -0.8 -5.1 Aerobic cobaltochelatase subunit CobN compare
PFR28_01157 -0.8 -1.6 hypothetical protein compare
PFR28_01372 -0.8 -1.3 Precorrin-4 C(11)-methyltransferase compare
PFR28_00006 -0.8 -2.5 RecBCD enzyme subunit RecC compare
PFR28_03369 -0.8 -3.9 Glycerol-3-phosphate regulon repressor compare
PFR28_03902 -0.8 -1.2 hypothetical protein compare
PFR28_04378 -0.8 -2.5 Tyrosine recombinase XerC compare
PFR28_00394 -0.8 -5.5 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
PFR28_05071 -0.8 -1.6 D-inositol-3-phosphate glycosyltransferase compare
PFR28_00292 -0.8 -1.8 Protein IscX compare
PFR28_03919 -0.8 -1.5 hypothetical protein compare
PFR28_03206 -0.8 -3.9 Cobalamin biosynthesis protein CobD compare
PFR28_03536 -0.8 -2.4 hypothetical protein compare
PFR28_00187 -0.8 -0.5 Histidinol dehydrogenase compare
PFR28_01042 -0.8 -1.5 hypothetical protein compare
PFR28_04064 -0.8 -1.6 Ribosomal RNA small subunit methyltransferase A compare
PFR28_00694 -0.8 -3.0 Beta-barrel assembly-enhancing protease compare
PFR28_01777 -0.7 -1.3 putative trans-3-hydroxy-L-proline dehydratase compare
PFR28_03748 -0.7 -2.8 Ribosomal large subunit pseudouridine synthase D compare
PFR28_03278 -0.7 -1.5 hypothetical protein compare
PFR28_03573 -0.7 -4.5 Toluene efflux pump outer membrane protein TtgI compare
PFR28_00261 -0.7 -1.6 hypothetical protein compare
PFR28_04990 -0.7 -3.2 hypothetical protein compare
PFR28_04782 -0.7 -5.8 hypothetical protein compare
PFR28_05216 -0.7 -3.7 tRNA-dihydrouridine synthase B compare
PFR28_00678 -0.7 -2.5 hypothetical protein compare
PFR28_04624 -0.7 -4.9 DNA polymerase I compare
PFR28_03950 -0.7 -1.5 Transcriptional repressor NrdR compare
PFR28_03016 -0.7 -3.5 hypothetical protein compare
PFR28_04719 -0.7 -2.4 hypothetical protein compare
PFR28_00930 -0.7 -4.0 GDP-perosamine synthase compare
PFR28_03203 -0.7 -2.3 Bifunctional adenosylcobalamin biosynthesis protein CobP compare
PFR28_01930 -0.7 -1.2 HTH-type transcriptional regulator McbR compare
PFR28_03200 -0.7 -2.5 Adenosylcobinamide-GDP ribazoletransferase compare
PFR28_04257 -0.7 -5.8 Cell division protein FtsX compare
PFR28_00820 -0.7 -4.5 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
PFR28_03955 -0.7 -2.6 hypothetical protein compare
PFR28_04714 -0.7 -3.8 HTH-type transcriptional regulator TrpI compare
PFR28_04487 -0.7 -4.5 hypothetical protein compare
PFR28_04110 -0.7 -4.4 Malate synthase G compare
PFR28_01386 -0.7 -1.8 Glutamine transport ATP-binding protein GlnQ compare
PFR28_00945 -0.7 -1.7 hypothetical protein compare
PFR28_04228 -0.7 -2.8 hypothetical protein compare
PFR28_02449 -0.7 -3.3 putative branched-chain-amino-acid aminotransferase compare
PFR28_05205 -0.6 -1.8 Precorrin-8X methylmutase compare
PFR28_04339 -0.6 -1.7 Glc operon transcriptional activator compare
PFR28_03205 -0.6 -2.5 Histidinol-phosphate aminotransferase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas sp. RS175

For carbon source Trisodium citrate dihydrate across organisms