Experiment set5S194 for Pseudomonas sp. RS175

Compare to:

Trisodium citrate dihydrate 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFR28_00098 -5.6 -3.8 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_03388 -5.3 -6.3 Quinolinate synthase A compare
PFR28_03843 -4.8 -8.6 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_04071 -4.8 -2.3 Multifunctional CCA protein compare
PFR28_03844 -4.6 -6.9 Thiamine-phosphate synthase compare
PFR28_04252 -4.3 -12.4 Thiazole synthase compare
PFR28_03653 -4.3 -5.8 Molybdopterin-synthase adenylyltransferase compare
PFR28_03012 -4.3 -7.1 Phosphate acyltransferase compare
PFR28_05091 -4.2 -23.3 Phosphomethylpyrimidine synthase compare
PFR28_04246 -3.9 -4.6 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_04245 -3.9 -3.8 Homoserine O-succinyltransferase compare
PFR28_02810 -3.8 -2.6 O-succinylhomoserine sulfhydrylase compare
PFR28_00188 -3.8 -2.6 Histidinol-phosphate aminotransferase compare
PFR28_04834 -3.7 -5.0 L-threonine dehydratase biosynthetic IlvA compare
PFR28_00681 -3.6 -13.4 hypothetical protein compare
PFR28_00683 -3.5 -7.0 Transcriptional regulatory protein tctD compare
PFR28_00193 -3.4 -8.1 Sulfate adenylyltransferase subunit 2 compare
PFR28_00960 -3.4 -6.0 hypothetical protein compare
PFR28_04874 -3.3 -15.0 Phosphoenolpyruvate carboxykinase (ATP) compare
PFR28_02838 -3.2 -15.2 Aromatic-amino-acid aminotransferase compare
PFR28_00194 -3.2 -7.2 Bifunctional enzyme CysN/CysC compare
PFR28_05125 -3.1 -3.0 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_00186 -2.8 -1.9 ATP phosphoribosyltransferase compare
PFR28_05015 -2.7 -4.5 Glutamate synthase [NADPH] large chain compare
PFR28_04832 -2.7 -4.1 putative phosphatase compare
PFR28_05016 -2.7 -3.1 Glutamate synthase [NADPH] small chain compare
PFR28_04930 -2.6 -1.8 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_04986 -2.6 -1.8 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_01366 -2.6 -3.1 Sulfite reductase [ferredoxin] compare
PFR28_00966 -2.6 -4.3 HTH-type transcriptional regulator CysB compare
PFR28_01142 -2.6 -7.3 Transaldolase compare
PFR28_04425 -2.6 -12.0 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_03363 -2.6 -5.7 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_00159 -2.6 -2.5 hypothetical protein compare
PFR28_03697 -2.5 -2.5 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_04565 -2.5 -15.8 Protein RarD compare
PFR28_04103 -2.5 -4.7 Biotin synthase compare
PFR28_04985 -2.5 -2.4 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_04944 -2.5 -7.4 DNA-binding transcriptional regulator NtrC compare
PFR28_04278 -2.4 -2.3 Dihydroxy-acid dehydratase compare
PFR28_01365 -2.4 -1.6 hypothetical protein compare
PFR28_00918 -2.4 -9.9 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_02608 -2.3 -2.6 DNA translocase FtsK compare
PFR28_04958 -2.3 -2.2 hypothetical protein compare
PFR28_00684 -2.2 -15.4 Sensor protein QseC compare
PFR28_05204 -2.2 -4.1 Sulfite reductase [ferredoxin] compare
PFR28_02603 -2.2 -1.5 Siroheme synthase compare
PFR28_04945 -2.2 -6.6 Sensory histidine kinase/phosphatase NtrB compare
PFR28_00179 -2.1 -9.5 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_04929 -2.1 -2.0 Histidine biosynthesis bifunctional protein HisB compare
PFR28_03865 -2.1 -6.5 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_04072 -2.1 -2.8 Bifunctional folate synthesis protein compare
PFR28_00182 -2.1 -10.5 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_03429 -2.1 -8.5 Thiamine-phosphate synthase compare
PFR28_00181 -2.1 -10.9 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_00296 -2.1 -2.7 Cytoskeleton protein RodZ compare
PFR28_01410 -2.0 -14.8 Response regulator GacA compare
PFR28_03218 -2.0 -1.4 Phosphoribosylglycinamide formyltransferase compare
PFR28_04933 -2.0 -1.3 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_00689 -2.0 -15.9 L-aspartate oxidase compare
PFR28_02824 -2.0 -1.3 3-isopropylmalate dehydratase large subunit compare
PFR28_00180 -2.0 -8.1 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_01139 -2.0 -13.8 Intermembrane phospholipid transport system lipoprotein MlaA compare
PFR28_04418 -1.9 -1.8 Exodeoxyribonuclease compare
PFR28_05000 -1.9 -3.8 Cell division protein FtsN compare
PFR28_03666 -1.9 -2.1 hypothetical protein compare
PFR28_03698 -1.8 -2.2 Acetolactate synthase isozyme 3 small subunit compare
PFR28_04830 -1.8 -12.2 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_02821 -1.8 -3.2 3-isopropylmalate dehydrogenase compare
PFR28_02823 -1.8 -1.2 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_00695 -1.8 -1.2 Sulfur carrier protein TusA compare
PFR28_03846 -1.8 -6.6 hypothetical protein compare
PFR28_05105 -1.8 -1.7 Phosphoserine phosphatase SerB2 compare
PFR28_00305 -1.8 -6.4 2-isopropylmalate synthase compare
PFR28_01319 -1.8 -10.3 1,4-alpha-glucan branching enzyme GlgB compare
PFR28_03282 -1.7 -4.3 Arginine N-succinyltransferase subunit alpha compare
PFR28_04932 -1.7 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_00089 -1.7 -1.8 Transcription termination/antitermination protein NusA compare
PFR28_03227 -1.7 -11.2 Signal transduction histidine-protein kinase BarA compare
PFR28_03412 -1.6 -4.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_01113 -1.6 -3.2 DNA topoisomerase 1 compare
PFR28_00928 -1.5 -2.3 putative sugar transferase EpsL compare
PFR28_04648 -1.5 -13.0 Citrate transporter conserved
PFR28_01181 -1.5 -7.0 hypothetical protein compare
PFR28_01182 -1.5 -1.6 hypothetical protein compare
PFR28_00169 -1.5 -5.3 Phosphocarrier protein NPr compare
PFR28_00331 -1.5 -5.2 Tyrosine recombinase XerD compare
PFR28_03724 -1.5 -5.5 Glucose-6-phosphate isomerase compare
PFR28_04566 -1.4 -9.9 4-chloro-allylglycine synthase compare
PFR28_02484 -1.4 -2.6 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_00393 -1.4 -10.3 LL-diaminopimelate aminotransferase conserved
PFR28_04902 -1.4 -3.7 Inner membrane protein YgaZ compare
PFR28_03413 -1.3 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_04564 -1.3 -10.7 Aspartate-semialdehyde dehydrogenase compare
PFR28_03714 -1.3 -8.1 RNA polymerase-binding transcription factor DksA compare
PFR28_02719 -1.3 -1.7 Integration host factor subunit alpha compare
PFR28_04486 -1.3 -8.1 Phosphate import ATP-binding protein PstB compare
PFR28_02145 -1.3 -11.9 Glycogen synthase compare
PFR28_05079 -1.3 -9.0 hypothetical protein compare
PFR28_03837 -1.2 -6.2 Leucine-responsive regulatory protein compare
PFR28_03612 -1.2 -2.4 Cell division protein ZapE compare
PFR28_03957 -1.2 -7.9 hypothetical protein compare
PFR28_04521 -1.2 -3.5 HTH-type transcriptional regulator HexR compare
PFR28_02688 -1.2 -2.9 hypothetical protein compare
PFR28_03203 -1.2 -4.3 Bifunctional adenosylcobalamin biosynthesis protein CobP compare
PFR28_05212 -1.2 -5.7 Sensor histidine kinase RcsC compare
PFR28_04489 -1.2 -6.1 Phosphate-binding protein PstS compare
PFR28_03596 -1.2 -2.5 Transcriptional regulator MraZ compare
PFR28_01930 -1.2 -1.8 HTH-type transcriptional regulator McbR compare
PFR28_04325 -1.2 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_03205 -1.2 -4.7 Histidinol-phosphate aminotransferase compare
PFR28_04842 -1.2 -3.9 D-3-phosphoglycerate dehydrogenase compare
PFR28_00780 -1.2 -1.6 hypothetical protein compare
PFR28_03209 -1.2 -3.2 Corrinoid adenosyltransferase compare
PFR28_04488 -1.2 -10.1 hypothetical protein compare
PFR28_00839 -1.2 -3.7 hypothetical protein compare
PFR28_04040 -1.1 -3.2 Protein YhfA compare
PFR28_03414 -1.1 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_03430 -1.1 -4.5 Arginine biosynthesis bifunctional protein ArgJ compare
PFR28_04903 -1.1 -3.6 hypothetical protein compare
PFR28_04208 -1.1 -4.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_01369 -1.1 -5.6 Methionine synthase compare
PFR28_04567 -1.1 -7.9 hypothetical protein compare
PFR28_05206 -1.1 -6.5 Precorrin-2 C(20)-methyltransferase compare
PFR28_03281 -1.1 -4.3 Arginine N-succinyltransferase subunit beta compare
PFR28_01184 -1.1 -7.3 hypothetical protein compare
PFR28_00913 -1.1 -3.9 Integration host factor subunit beta compare
PFR28_00427 -1.1 -8.5 RNA polymerase sigma factor RpoS compare
PFR28_02289 -1.1 -2.5 HTH-type transcriptional repressor NicS compare
PFR28_04380 -1.0 -1.7 Transcriptional regulator SutA compare
PFR28_03956 -1.0 -6.7 putative ABC transporter ATP-binding protein compare
PFR28_00480 -1.0 -4.8 HTH-type transcriptional activator CmpR compare
PFR28_01092 -1.0 -1.6 Cbb3-type cytochrome c oxidase subunit CcoP1 compare
PFR28_05201 -1.0 -2.1 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_05118 -1.0 -3.7 N-acetylmuramoyl-L-alanine amidase AmiC compare
PFR28_03200 -1.0 -3.2 Adenosylcobinamide-GDP ribazoletransferase compare
PFR28_04927 -1.0 -2.6 PanD regulatory factor compare
PFR28_05104 -0.9 -2.3 hypothetical protein compare
PFR28_03570 -0.9 -3.1 p-hydroxybenzoic acid efflux pump subunit AaeA compare
PFR28_03902 -0.9 -1.4 hypothetical protein compare
PFR28_00184 -0.9 -2.3 hypothetical protein compare
PFR28_04435 -0.9 -3.8 ATP-dependent DNA helicase RecG compare
PFR28_04833 -0.9 -3.4 hypothetical protein compare
PFR28_03573 -0.9 -5.4 Toluene efflux pump outer membrane protein TtgI compare
PFR28_03202 -0.9 -1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_02403 -0.9 -1.1 Na(+)/H(+) antiporter subunit C1 compare
PFR28_04887 -0.9 -2.1 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_03601 -0.9 -4.1 hypothetical protein compare
PFR28_00837 -0.9 -5.8 hypothetical protein compare
PFR28_05207 -0.9 -4.1 Siroheme synthase compare
PFR28_05071 -0.8 -2.2 D-inositol-3-phosphate glycosyltransferase compare
PFR28_04064 -0.8 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PFR28_05199 -0.8 -3.2 Precorrin-6A reductase compare
PFR28_04569 -0.8 -4.5 HTH-type transcriptional regulator CdhR compare
PFR28_03369 -0.8 -4.1 Glycerol-3-phosphate regulon repressor compare
PFR28_00405 -0.8 -1.5 hypothetical protein compare
PFR28_04782 -0.8 -6.9 hypothetical protein compare
PFR28_02268 -0.8 -1.8 hypothetical protein compare
PFR28_03478 -0.8 -5.6 HTH-type transcriptional regulator MetR compare
PFR28_04102 -0.8 -4.5 8-amino-7-oxononanoate synthase compare
PFR28_01435 -0.8 -1.2 Response regulator UvrY compare
PFR28_03310 -0.8 -1.7 Peptidyl-tRNA hydrolase ArfB compare
PFR28_00690 -0.8 -3.2 RNA polymerase sigma-H factor compare
PFR28_03208 -0.8 -4.3 Cobyrinate a,c-diamide synthase compare
PFR28_05205 -0.8 -2.2 Precorrin-8X methylmutase compare
PFR28_04378 -0.8 -2.2 Tyrosine recombinase XerC compare
PFR28_00187 -0.8 -0.9 Histidinol dehydrogenase compare
PFR28_04623 -0.8 -2.9 hypothetical protein compare
PFR28_02449 -0.8 -3.9 putative branched-chain-amino-acid aminotransferase compare
PFR28_00820 -0.8 -4.2 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
PFR28_03869 -0.8 -2.9 Ribosomal RNA large subunit methyltransferase H compare
PFR28_04344 -0.8 -2.8 Exopolyphosphatase compare
PFR28_00006 -0.7 -2.0 RecBCD enzyme subunit RecC compare
PFR28_01227 -0.7 -1.8 Trigger factor compare
PFR28_00926 -0.7 -0.7 hypothetical protein compare
PFR28_03278 -0.7 -2.4 hypothetical protein compare
PFR28_04460 -0.7 -2.3 hypothetical protein compare
PFR28_02733 -0.7 -3.6 Ribokinase compare
PFR28_04714 -0.7 -4.2 HTH-type transcriptional regulator TrpI compare
PFR28_03204 -0.7 -3.7 Cobyric acid synthase compare
PFR28_03243 -0.7 -3.3 Virulence sensor histidine kinase PhoQ compare
PFR28_01060 -0.7 -2.1 HTH-type transcriptional repressor NanR compare
PFR28_03572 -0.7 -4.3 p-hydroxybenzoic acid efflux pump subunit AaeB compare
PFR28_03955 -0.7 -2.9 hypothetical protein compare
PFR28_04713 -0.7 -1.9 putative protein YqjD compare
PFR28_01077 -0.7 -2.7 Recombination protein RecR compare
PFR28_04110 -0.7 -4.7 Malate synthase G compare
PFR28_01386 -0.7 -1.9 Glutamine transport ATP-binding protein GlnQ compare
PFR28_00694 -0.7 -2.8 Beta-barrel assembly-enhancing protease compare
PFR28_04675 -0.7 -0.8 hypothetical protein compare
PFR28_03749 -0.7 -1.2 Outer membrane protein assembly factor BamD compare
PFR28_00356 -0.7 -4.1 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_04100 -0.7 -3.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_03266 -0.7 -1.8 hypothetical protein compare
PFR28_04869 -0.7 -4.3 Osmolarity sensor protein EnvZ compare
PFR28_01939 -0.7 -2.1 Phosphonoacetaldehyde hydrolase compare
PFR28_00394 -0.7 -4.9 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
PFR28_04396 -0.7 -2.9 HTH-type transcriptional regulator PuuR compare
PFR28_04258 -0.7 -3.7 Cell division ATP-binding protein FtsE compare
PFR28_00917 -0.7 -5.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas sp. RS175

For carbon source Trisodium citrate dihydrate across organisms