Experiment set5S192 for Erwinia amylovora T8

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Matrix:KB soft agar;Phage:PBS;Temp:28;Samp:32-9

Group:
Media:
Culturing: Erwinia_T8_ML2, at 28 (C)
By: Milo on 17-Aug-24

Specific Phenotypes

For 3 genes in this experiment

SEED Subsystems

Subsystem #Specific
Biotin biosynthesis 2
KDO2-Lipid A biosynthesis 1
n-Phenylalkanoic acid degradation 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
long-chain fatty acid activation 1 1 1
linoleate biosynthesis II (animals) 2 1 1
cinnamoyl-CoA biosynthesis 2 1 1
γ-linolenate biosynthesis II (animals) 2 1 1
3-methyl-branched fatty acid α-oxidation 6 3 2
oleate biosynthesis I (plants) 3 1 1
alkane biosynthesis II 3 1 1
biotin biosynthesis from 8-amino-7-oxononanoate I 4 4 1
biotin biosynthesis from 8-amino-7-oxononanoate II 4 3 1
phytol degradation 4 3 1
phosphatidylcholine acyl editing 4 2 1
long chain fatty acid ester synthesis (engineered) 4 2 1
pinosylvin metabolism 4 1 1
wax esters biosynthesis II 4 1 1
sporopollenin precursors biosynthesis 18 5 4
CMP-3-deoxy-D-manno-octulosonate biosynthesis 5 5 1
5,6-dehydrokavain biosynthesis (engineered) 10 8 2
biotin biosynthesis from 8-amino-7-oxononanoate III 5 3 1
sphingosine and sphingosine-1-phosphate metabolism 10 4 2
benzoate biosynthesis III (CoA-dependent, non-β-oxidative) 5 2 1
octane oxidation 5 2 1
stearate biosynthesis IV 6 4 1
fatty acid salvage 6 4 1
stearate biosynthesis II (bacteria and plants) 6 4 1
biotin biosynthesis II 6 4 1
6-gingerol analog biosynthesis (engineered) 6 2 1
stearate biosynthesis I (animals) 6 1 1
CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis 7 4 1
ceramide degradation by α-oxidation 7 2 1
arachidonate biosynthesis III (6-desaturase, mammals) 7 1 1
capsaicin biosynthesis 7 1 1
icosapentaenoate biosynthesis II (6-desaturase, mammals) 7 1 1
icosapentaenoate biosynthesis III (8-desaturase, mammals) 7 1 1
2-deoxy-D-ribose degradation II 8 3 1
ceramide and sphingolipid recycling and degradation (yeast) 16 4 2
benzoate biosynthesis I (CoA-dependent, β-oxidative) 9 4 1
3-phenylpropanoate degradation 10 4 1
suberin monomers biosynthesis 20 3 2
superpathway of fatty acid biosynthesis II (plant) 43 30 4
biotin biosynthesis I 15 13 1
palmitate biosynthesis II (type II fatty acid synthase) 31 22 2
cutin biosynthesis 16 2 1
superpathway of (Kdo)2-lipid A biosynthesis 17 17 1
superpathway of Kdo2-lipid A biosynthesis 25 17 1
superpathway of fatty acids biosynthesis (E. coli) 53 40 2
palmitate biosynthesis III 29 21 1
oleate β-oxidation 35 29 1