Experiment set5S17 for Erwinia tracheiphila SCR3

Compare to:

plant=Melon; plant sample=M5; plant location=P2

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -5.8 -2.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS15425 rpoE -5.5 -9.2 RNA polymerase sigma factor RpoE compare
LU632_RS23980 tatC -5.4 -7.4 Sec-independent protein translocase subunit TatC compare
LU632_RS02865 leuD -5.3 -5.2 3-isopropylmalate dehydratase small subunit compare
LU632_RS07865 purF -5.2 -7.2 amidophosphoribosyltransferase compare
LU632_RS09475 mntR -5.2 -4.2 manganese-binding transcriptional regulator MntR compare
LU632_RS08790 -5.1 -4.9 EpsG family protein compare
LU632_RS08785 -5.0 -3.5 glycosyltransferase family 2 protein compare
LU632_RS21755 -4.8 -12.5 adenylosuccinate synthase compare
LU632_RS22140 glnL -4.8 -9.2 nitrogen regulation protein NR(II) compare
LU632_RS09955 pyrD -4.8 -4.7 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS08945 hisD -4.8 -4.7 histidinol dehydrogenase compare
LU632_RS06615 ptsI -4.7 -8.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS08815 -4.6 -3.2 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS19610 argB -4.6 -3.0 acetylglutamate kinase compare
LU632_RS17975 purL -4.5 -5.3 phosphoribosylformylglycinamidine synthase compare
LU632_RS22135 glnG -4.4 -4.3 nitrogen regulation protein NR(I) compare
LU632_RS20950 pyrB -4.3 -3.0 aspartate carbamoyltransferase compare
LU632_RS02755 carA -4.3 -5.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS08950 hisG -4.2 -9.0 ATP phosphoribosyltransferase compare
LU632_RS01015 purD -4.2 -2.9 phosphoribosylamine--glycine ligase compare
LU632_RS02880 leuA -4.1 -11.6 2-isopropylmalate synthase compare
LU632_RS12500 pyrF -4.1 -4.0 orotidine-5'-phosphate decarboxylase compare
LU632_RS08915 hisIE -4.1 -5.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS08775 -4.1 -4.0 protein tyrosine phosphatase compare
LU632_RS02750 carB -4.1 -4.8 carbamoyl-phosphate synthase large subunit compare
LU632_RS02875 leuB -4.0 -9.8 3-isopropylmalate dehydrogenase compare
LU632_RS08935 hisB -4.0 -6.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS21235 mlaD -4.0 -5.5 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS08275 purM -4.0 -2.7 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS02870 leuC -3.9 -9.8 3-isopropylmalate dehydratase large subunit compare
LU632_RS02100 -3.9 -12.9 hemolysin family protein compare
LU632_RS19615 argC -3.9 -5.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS16115 sdhC -3.9 -6.2 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS10340 pyrC -3.9 -2.7 dihydroorotase compare
LU632_RS08930 hisH -3.8 -6.4 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS08820 -3.8 -2.7 lipopolysaccharide biosynthesis protein compare
LU632_RS19585 sthA -3.8 -12.2 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS22810 -3.8 -9.7 aspartate aminotransferase family protein compare
LU632_RS09915 ompC -3.7 -8.7 porin OmpC compare
LU632_RS19930 rseP -3.7 -5.8 sigma E protease regulator RseP compare
LU632_RS08780 wzc -3.7 -8.3 tyrosine-protein kinase Wzc compare
LU632_RS08925 hisA -3.7 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS19605 -3.7 -7.4 argininosuccinate synthase compare
LU632_RS21365 mdh -3.6 -7.7 malate dehydrogenase compare
LU632_RS06635 zipA -3.6 -2.0 cell division protein ZipA compare
LU632_RS07995 nuoH -3.6 -4.9 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS08920 hisF -3.5 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS08770 -3.5 -5.8 polysaccharide export protein compare
LU632_RS21245 mlaF -3.5 -8.1 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS24270 gppA -3.5 -1.8 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
LU632_RS08940 hisC -3.4 -9.9 histidinol-phosphate transaminase compare
LU632_RS16415 tatE -3.4 -0.9 twin-arginine translocase subunit TatE compare
LU632_RS03310 -3.4 -14.1 sucrose-6-phosphate hydrolase compare
LU632_RS17615 -3.4 -3.9 YejL family protein compare
LU632_RS08885 -3.4 -3.5 ABC transporter ATP-binding protein compare
LU632_RS08800 -3.3 -1.8 glycosyltransferase compare
LU632_RS19980 glnD -3.2 -2.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS07775 aroC -3.2 -2.2 chorismate synthase compare
LU632_RS19275 ftsE -3.2 -6.0 cell division ATP-binding protein FtsE compare
LU632_RS21225 mlaB -3.2 -4.3 lipid asymmetry maintenance protein MlaB compare
LU632_RS20900 argF -3.2 -11.4 ornithine carbamoyltransferase compare
LU632_RS22015 pyrE -3.1 -2.2 orotate phosphoribosyltransferase compare
LU632_RS08025 nuoN -3.1 -5.6 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS21360 degS -3.1 -14.2 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS20780 -3.1 -0.8 hypothetical protein compare
LU632_RS06210 argA -3.1 -7.6 amino-acid N-acetyltransferase compare
LU632_RS16105 sdhA -3.1 -7.6 succinate dehydrogenase flavoprotein subunit compare
LU632_RS21230 mlaC -3.0 -4.1 phospholipid-binding protein MlaC compare
LU632_RS26120 -3.0 -2.7 WGR domain-containing protein compare
LU632_RS19620 argE -3.0 -4.5 acetylornithine deacetylase compare
LU632_RS15640 -3.0 -1.5 helix-turn-helix domain-containing protein compare
LU632_RS07975 nuoC -3.0 -11.7 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS08335 -3.0 -1.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS16110 sdhD -3.0 -5.3 succinate dehydrogenase membrane anchor subunit compare
LU632_RS22935 envZ -2.9 -8.0 two-component system sensor histidine kinase EnvZ compare
LU632_RS07970 -2.9 -9.1 NADH-quinone oxidoreductase subunit B compare
LU632_RS19775 -2.9 -13.2 amino acid ABC transporter permease compare
LU632_RS08000 nuoI -2.9 -3.4 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS08805 -2.9 -13.0 phage tailspike protein compare
LU632_RS07965 -2.9 -7.0 NADH-quinone oxidoreductase subunit A compare
LU632_RS04250 yiaK -2.9 -5.4 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS02615 thrB -2.8 -2.8 homoserine kinase compare
LU632_RS21875 gpsA -2.8 -11.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS24155 -2.8 -1.4 class I adenylate cyclase compare
LU632_RS18505 yajC -2.8 -0.7 preprotein translocase subunit YajC compare
LU632_RS08020 nuoM -2.7 -6.1 NADH-quinone oxidoreductase subunit M compare
LU632_RS21085 secG -2.7 -2.2 preprotein translocase subunit SecG compare
LU632_RS19600 argH -2.7 -8.8 argininosuccinate lyase compare
LU632_RS11420 -2.7 -1.6 FNR family transcription factor compare
LU632_RS09245 -2.6 -4.4 L,D-transpeptidase family protein compare
LU632_RS23985 tatB -2.6 -2.9 Sec-independent protein translocase protein TatB compare
LU632_RS19270 ftsX -2.6 -12.0 permease-like cell division protein FtsX compare
LU632_RS05855 serA -2.6 -9.6 phosphoglycerate dehydrogenase compare
LU632_RS15250 purK -2.6 -1.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS01020 purH -2.5 -1.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS04600 -2.5 -0.9 hypothetical protein compare
LU632_RS02140 -2.5 -1.9 ribosome-associated protein compare
LU632_RS24405 -2.4 -7.2 branched-chain amino acid transaminase compare
LU632_RS14735 -2.4 -3.8 glycine zipper 2TM domain-containing protein compare
LU632_RS19780 -2.4 -9.1 amino acid ABC transporter permease compare
LU632_RS03305 -2.4 -7.9 sucrose-specific PTS transporter subunit IIBC compare
LU632_RS17645 -2.4 -0.9 hypothetical protein compare
LU632_RS04740 -2.4 -0.8 DNA topoisomerase IV subunit B compare
LU632_RS23695 -2.4 -1.7 MmcQ/YjbR family DNA-binding protein compare
LU632_RS01085 -2.3 -2.1 class I SAM-dependent methyltransferase compare
LU632_RS25725 -2.3 -1.8 ParA family protein compare
LU632_RS08015 nuoL -2.3 -9.5 NADH-quinone oxidoreductase subunit L compare
LU632_RS07985 nuoF -2.3 -7.4 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS18420 -2.3 -0.8 LysE family translocator compare
LU632_RS07905 -2.3 -1.0 IS91 family transposase compare
LU632_RS24205 rffM -2.3 -8.2 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
LU632_RS08010 nuoK -2.3 -3.6 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS19665 ftsN -2.3 -2.2 cell division protein FtsN compare
LU632_RS19990 -2.3 -1.9 DUF3461 family protein compare
LU632_RS19770 -2.3 -10.3 amino acid ABC transporter substrate-binding protein compare
LU632_RS15445 tyrA -2.3 -10.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS19785 -2.2 -8.0 amino acid ABC transporter ATP-binding protein compare
LU632_RS06585 -2.2 -1.1 FlxA-like family protein compare
LU632_RS06100 -2.2 -0.8 hypothetical protein compare
LU632_RS12940 purU -2.2 -10.9 formyltetrahydrofolate deformylase compare
LU632_RS09795 aroA -2.2 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS25495 -2.2 -1.6 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS21445 mreC -2.2 -1.7 rod shape-determining protein MreC compare
LU632_RS07990 nuoG -2.2 -6.3 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS03300 -2.2 -12.7 carbohydrate porin compare
LU632_RS02070 hflC -2.2 -2.1 protease modulator HflC compare
LU632_RS08005 nuoJ -2.2 -5.4 NADH-quinone oxidoreductase subunit J compare
LU632_RS02065 hflK -2.2 -1.5 FtsH protease activity modulator HflK compare
LU632_RS09745 -2.2 -1.1 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS21880 secB -2.2 -3.1 protein-export chaperone SecB compare
LU632_RS12260 -2.1 -1.1 tyrosine-type recombinase/integrase compare
LU632_RS22940 ompR -2.1 -4.9 two-component system response regulator OmpR compare
LU632_RS21240 mlaE -2.1 -3.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS06610 crr -2.1 -2.2 PTS glucose transporter subunit IIA compare
LU632_RS02910 rsmH -2.1 -6.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS24105 -2.1 -1.0 thioesterase family protein compare
LU632_RS24445 -2.0 -0.9 DUF413 domain-containing protein compare
LU632_RS24215 -2.0 -7.0 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
LU632_RS14010 ldcA -2.0 -3.3 muramoyltetrapeptide carboxypeptidase compare
LU632_RS03245 -2.0 -3.6 hypothetical protein compare
LU632_RS08795 -2.0 -9.3 glycosyltransferase compare
LU632_RS06735 -2.0 -8.5 DUF1176 domain-containing protein compare
LU632_RS11560 pspA -2.0 -2.4 phage shock protein PspA compare
LU632_RS16100 -2.0 -2.5 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS07300 mlaA -2.0 -4.0 phospholipid-binding lipoprotein MlaA compare
LU632_RS17805 rodZ -2.0 -1.0 cytoskeleton protein RodZ compare
LU632_RS24400 ilvD -1.9 -8.8 dihydroxy-acid dehydratase compare
LU632_RS08645 -1.9 -1.5 T3SS effector OspC family protein compare
LU632_RS06555 -1.9 -1.5 IS110 family transposase compare
LU632_RS05225 -1.9 -2.7 hypothetical protein compare
LU632_RS22410 metA -1.9 -7.8 homoserine O-succinyltransferase compare
LU632_RS19815 gmhB -1.9 -1.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS05960 sdhE -1.8 -2.1 FAD assembly factor SdhE compare
LU632_RS18995 proC -1.8 -1.4 pyrroline-5-carboxylate reductase compare
LU632_RS06040 lysA -1.8 -6.1 diaminopimelate decarboxylase compare
LU632_RS03140 sctS -1.8 -2.9 type III secretion system export apparatus subunit SctS compare
LU632_RS24885 pstC -1.8 -2.1 phosphate ABC transporter permease PstC compare
LU632_RS06335 -1.8 -5.5 glycerate kinase compare
LU632_RS21955 -1.8 -0.8 glycosyltransferase family 4 protein compare
LU632_RS23875 dsbA -1.8 -0.8 thiol:disulfide interchange protein DsbA compare
LU632_RS24250 wecA -1.8 -10.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS00220 -1.8 -8.2 family 10 glycosylhydrolase compare
LU632_RS05025 -1.8 -0.8 TIGR03749 family integrating conjugative element protein compare
LU632_RS23360 -1.8 -3.3 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS13370 pyk -1.8 -9.4 pyruvate kinase compare
LU632_RS24840 kup -1.8 -7.6 low affinity potassium transporter Kup compare
LU632_RS15325 -1.8 -1.5 hypothetical protein compare
LU632_RS06410 -1.7 -1.2 phosphoadenylyl-sulfate reductase compare
LU632_RS20545 metC -1.7 -7.5 cystathionine beta-lyase compare
LU632_RS02610 thrA -1.7 -5.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
LU632_RS24210 wzyE -1.7 -6.6 ECA oligosaccharide polymerase compare
LU632_RS02635 mog -1.7 -3.2 molybdopterin adenylyltransferase compare
LU632_RS24385 ilvC -1.7 -5.1 ketol-acid reductoisomerase compare
LU632_RS14835 plsX -1.7 -4.3 phosphate acyltransferase PlsX compare
LU632_RS24845 -1.7 -0.9 hypothetical protein compare
LU632_RS09705 clpA -1.7 -7.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LU632_RS20265 -1.7 -1.7 IS630 family transposase compare
LU632_RS17785 bamB -1.7 -3.2 outer membrane protein assembly factor BamB compare
LU632_RS21895 envC -1.7 -7.8 murein hydrolase activator EnvC compare
LU632_RS24225 rffA -1.6 -8.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
LU632_RS24420 -1.6 -1.3 IlvGEDA operon leader peptide compare
LU632_RS22200 spoT -1.6 -2.2 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
LU632_RS20695 bacA -1.6 -3.4 undecaprenyl-diphosphate phosphatase compare
LU632_RS01405 -1.6 -5.3 TIGR03749 family integrating conjugative element protein compare
LU632_RS07980 nuoE -1.6 -0.7 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS09635 -1.6 -1.7 YbjN domain-containing protein compare
LU632_RS00760 -1.6 -3.2 TagK domain-containing protein compare
LU632_RS14225 -1.6 -1.8 replication protein P compare
LU632_RS03440 -1.5 -1.5 single-stranded DNA-binding protein compare
LU632_RS18350 tig -1.5 -3.7 trigger factor compare
LU632_RS10375 -1.5 -0.9 IS5 family transposase compare
LU632_RS19750 -1.5 -1.9 PhzF family phenazine biosynthesis protein compare
LU632_RS06955 -1.5 -1.6 hypothetical protein compare
LU632_RS12925 rssB -1.5 -1.1 two-component system response regulator RssB compare
LU632_RS18455 panE -1.5 -4.4 2-dehydropantoate 2-reductase compare
LU632_RS25250 gspI -1.5 -2.1 type II secretion system minor pseudopilin GspI compare
LU632_RS24230 rffC -1.5 -3.9 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
LU632_RS13460 cmoB -1.5 -3.7 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
LU632_RS17820 ndk -1.5 -1.8 nucleoside-diphosphate kinase compare


Specific Phenotypes

For 1 genes in this experiment

For in planta plant=Melon; plant sample=M5; plant location=P2 in Erwinia tracheiphila SCR3

For in planta plant=Melon; plant sample=M5; plant location=P2 across organisms