Experiment set5S16 for Erwinia tracheiphila SCR3

Compare to:

plant=Melon; plant sample=M4; plant location=P2

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -4.9 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS09475 mntR -4.8 -2.9 manganese-binding transcriptional regulator MntR compare
LU632_RS23980 tatC -4.6 -6.3 Sec-independent protein translocase subunit TatC compare
LU632_RS15425 rpoE -4.5 -9.1 RNA polymerase sigma factor RpoE compare
LU632_RS21755 -4.4 -6.0 adenylosuccinate synthase compare
LU632_RS17820 ndk -4.3 -2.0 nucleoside-diphosphate kinase compare
LU632_RS16115 sdhC -4.2 -2.9 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS09955 pyrD -4.1 -2.8 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS07865 purF -3.9 -8.8 amidophosphoribosyltransferase compare
LU632_RS06615 ptsI -3.8 -6.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS02875 leuB -3.7 -6.2 3-isopropylmalate dehydrogenase compare
LU632_RS08815 -3.6 -2.5 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS08945 hisD -3.6 -4.3 histidinol dehydrogenase compare
LU632_RS17975 purL -3.4 -5.3 phosphoribosylformylglycinamidine synthase compare
LU632_RS22810 -3.4 -7.2 aspartate aminotransferase family protein compare
LU632_RS02880 leuA -3.3 -9.8 2-isopropylmalate synthase compare
LU632_RS20950 pyrB -3.3 -2.3 aspartate carbamoyltransferase compare
LU632_RS08785 -3.3 -5.1 glycosyltransferase family 2 protein compare
LU632_RS08885 -3.3 -3.2 ABC transporter ATP-binding protein compare
LU632_RS02100 -3.3 -9.0 hemolysin family protein compare
LU632_RS12500 pyrF -3.3 -3.2 orotidine-5'-phosphate decarboxylase compare
LU632_RS08775 -3.2 -3.8 protein tyrosine phosphatase compare
LU632_RS02870 leuC -3.2 -6.9 3-isopropylmalate dehydratase large subunit compare
LU632_RS21360 degS -3.2 -10.8 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS03310 -3.2 -11.2 sucrose-6-phosphate hydrolase compare
LU632_RS02865 leuD -3.1 -6.0 3-isopropylmalate dehydratase small subunit compare
LU632_RS15765 -3.1 -0.9 IS481 family transposase compare
LU632_RS08915 hisIE -3.1 -4.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS02750 carB -3.1 -4.3 carbamoyl-phosphate synthase large subunit compare
LU632_RS21875 gpsA -3.1 -8.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS19600 argH -3.1 -6.9 argininosuccinate lyase compare
LU632_RS22140 glnL -3.1 -6.9 nitrogen regulation protein NR(II) compare
LU632_RS01015 purD -3.1 -3.7 phosphoribosylamine--glycine ligase compare
LU632_RS09915 ompC -3.1 -5.5 porin OmpC compare
LU632_RS10340 pyrC -3.0 -3.0 dihydroorotase compare
LU632_RS16110 sdhD -3.0 -2.9 succinate dehydrogenase membrane anchor subunit compare
LU632_RS08780 wzc -3.0 -7.4 tyrosine-protein kinase Wzc compare
LU632_RS08275 purM -2.9 -2.9 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS04780 -2.9 -0.8 replication initiation protein compare
LU632_RS24405 -2.9 -8.0 branched-chain amino acid transaminase compare
LU632_RS08920 hisF -2.9 -4.4 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS16415 tatE -2.9 -0.8 twin-arginine translocase subunit TatE compare
LU632_RS21365 mdh -2.9 -5.5 malate dehydrogenase compare
LU632_RS19930 rseP -2.9 -5.4 sigma E protease regulator RseP compare
LU632_RS21235 mlaD -2.9 -5.1 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS02910 rsmH -2.8 -7.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS02755 carA -2.8 -6.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS08790 -2.8 -5.8 EpsG family protein compare
LU632_RS08820 -2.8 -2.7 lipopolysaccharide biosynthesis protein compare
LU632_RS04250 yiaK -2.8 -4.2 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS08930 hisH -2.8 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS22135 glnG -2.8 -4.6 nitrogen regulation protein NR(I) compare
LU632_RS16560 -2.8 -1.3 hypothetical protein compare
LU632_RS06100 -2.7 -0.8 hypothetical protein compare
LU632_RS19585 sthA -2.7 -8.9 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS08880 -2.7 -2.0 ABC transporter permease compare
LU632_RS08770 -2.7 -3.6 polysaccharide export protein compare
LU632_RS21240 mlaE -2.6 -1.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS08935 hisB -2.6 -6.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS21225 mlaB -2.6 -3.1 lipid asymmetry maintenance protein MlaB compare
LU632_RS19275 ftsE -2.6 -5.8 cell division ATP-binding protein FtsE compare
LU632_RS07965 -2.5 -5.2 NADH-quinone oxidoreductase subunit A compare
LU632_RS19615 argC -2.5 -5.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS22940 ompR -2.5 -3.4 two-component system response regulator OmpR compare
LU632_RS15445 tyrA -2.5 -9.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS21245 mlaF -2.5 -4.9 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS16105 sdhA -2.4 -4.1 succinate dehydrogenase flavoprotein subunit compare
LU632_RS19270 ftsX -2.4 -8.5 permease-like cell division protein FtsX compare
LU632_RS21940 -2.4 -2.8 glycosyltransferase compare
LU632_RS14835 plsX -2.4 -3.9 phosphate acyltransferase PlsX compare
LU632_RS07975 nuoC -2.4 -9.1 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS20900 argF -2.3 -7.8 ornithine carbamoyltransferase compare
LU632_RS08800 -2.3 -1.4 glycosyltransferase compare
LU632_RS21445 mreC -2.3 -1.6 rod shape-determining protein MreC compare
LU632_RS07985 nuoF -2.3 -5.7 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS07775 aroC -2.3 -1.6 chorismate synthase compare
LU632_RS14735 -2.2 -5.7 glycine zipper 2TM domain-containing protein compare
LU632_RS08805 -2.2 -10.2 phage tailspike protein compare
LU632_RS08025 nuoN -2.2 -4.0 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS19610 argB -2.2 -3.1 acetylglutamate kinase compare
LU632_RS06610 crr -2.2 -1.5 PTS glucose transporter subunit IIA compare
LU632_RS19980 glnD -2.2 -1.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS08940 hisC -2.1 -7.4 histidinol-phosphate transaminase compare
LU632_RS14860 rne -2.1 -0.8 ribonuclease E compare
LU632_RS08010 nuoK -2.1 -2.1 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS24215 -2.1 -6.0 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
LU632_RS10625 -2.1 -1.7 N-acetylmuramoyl-L-alanine amidase compare
LU632_RS24105 -2.1 -0.8 thioesterase family protein compare
LU632_RS22015 pyrE -2.1 -1.5 orotate phosphoribosyltransferase compare
LU632_RS08950 hisG -2.1 -7.8 ATP phosphoribosyltransferase compare
LU632_RS03305 -2.1 -6.9 sucrose-specific PTS transporter subunit IIBC compare
LU632_RS23360 -2.1 -3.9 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS12940 purU -2.1 -11.4 formyltetrahydrofolate deformylase compare
LU632_RS19780 -2.1 -7.7 amino acid ABC transporter permease compare
LU632_RS22935 envZ -2.1 -5.5 two-component system sensor histidine kinase EnvZ compare
LU632_RS08285 -2.1 -1.4 hypothetical protein compare
LU632_RS02140 -2.0 -2.1 ribosome-associated protein compare
LU632_RS01085 -2.0 -1.9 class I SAM-dependent methyltransferase compare
LU632_RS07995 nuoH -2.0 -3.4 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS17615 -2.0 -2.7 YejL family protein compare
LU632_RS05855 serA -2.0 -7.4 phosphoglycerate dehydrogenase compare
LU632_RS18590 nrdR -2.0 -1.6 transcriptional regulator NrdR compare
LU632_RS07970 -2.0 -6.8 NADH-quinone oxidoreductase subunit B compare
LU632_RS21085 secG -2.0 -1.5 preprotein translocase subunit SecG compare
LU632_RS08335 -2.0 -1.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS03300 -2.0 -10.1 carbohydrate porin compare
LU632_RS05960 sdhE -1.9 -2.3 FAD assembly factor SdhE compare
LU632_RS07685 -1.9 -0.7 helix-turn-helix domain-containing protein compare
LU632_RS07980 nuoE -1.9 -0.7 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS07990 nuoG -1.9 -5.3 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS02615 thrB -1.9 -1.8 homoserine kinase compare
LU632_RS16100 -1.9 -1.3 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS24840 kup -1.9 -5.7 low affinity potassium transporter Kup compare
LU632_RS21230 mlaC -1.9 -2.5 phospholipid-binding protein MlaC compare
LU632_RS08925 hisA -1.9 -1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS03225 sctL -1.8 -2.4 type III secretion system stator protein SctL compare
LU632_RS08015 nuoL -1.8 -5.7 NADH-quinone oxidoreductase subunit L compare
LU632_RS24155 -1.8 -1.0 class I adenylate cyclase compare
LU632_RS19785 -1.8 -5.5 amino acid ABC transporter ATP-binding protein compare
LU632_RS03245 -1.8 -3.0 hypothetical protein compare
LU632_RS10170 -1.8 -1.6 autoinducer binding domain-containing protein compare
LU632_RS24205 rffM -1.8 -6.2 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
LU632_RS24385 ilvC -1.8 -4.6 ketol-acid reductoisomerase compare
LU632_RS03600 lysB -1.8 -2.1 Rz-like lysis system protein LysB compare
LU632_RS07300 mlaA -1.8 -2.7 phospholipid-binding lipoprotein MlaA compare
LU632_RS01190 proA -1.8 -6.5 glutamate-5-semialdehyde dehydrogenase compare
LU632_RS06335 -1.8 -5.6 glycerate kinase compare
LU632_RS14010 ldcA -1.7 -1.7 muramoyltetrapeptide carboxypeptidase compare
LU632_RS24250 wecA -1.7 -9.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS24400 ilvD -1.7 -6.3 dihydroxy-acid dehydratase compare
LU632_RS11345 -1.7 -0.9 transposase compare
LU632_RS03160 -1.7 -5.0 hypothetical protein compare
LU632_RS06825 -1.7 -0.9 hypothetical protein compare
LU632_RS19775 -1.7 -7.7 amino acid ABC transporter permease compare
LU632_RS20695 bacA -1.7 -3.7 undecaprenyl-diphosphate phosphatase compare
LU632_RS08005 nuoJ -1.7 -3.4 NADH-quinone oxidoreductase subunit J compare
LU632_RS16285 -1.7 -0.9 tRNA-Met compare
LU632_RS06635 zipA -1.7 -1.2 cell division protein ZipA compare
LU632_RS19770 -1.7 -7.4 amino acid ABC transporter substrate-binding protein compare
LU632_RS16250 nagA -1.7 -4.6 N-acetylglucosamine-6-phosphate deacetylase compare
LU632_RS17370 -1.7 -0.6 hypothetical protein compare
LU632_RS09635 -1.6 -1.9 YbjN domain-containing protein compare
LU632_RS21740 -1.6 -1.1 hypothetical protein compare
LU632_RS06210 argA -1.6 -4.8 amino-acid N-acetyltransferase compare
LU632_RS13620 -1.6 -1.2 phosphatase compare
LU632_RS15250 purK -1.6 -1.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS26015 -1.6 -4.8 hypothetical protein compare
LU632_RS06040 lysA -1.6 -4.5 diaminopimelate decarboxylase compare
LU632_RS13370 pyk -1.6 -5.4 pyruvate kinase compare
LU632_RS03500 -1.6 -1.2 DUF2724 domain-containing protein compare
LU632_RS24845 -1.6 -0.8 hypothetical protein compare
LU632_RS11895 -1.6 -2.6 hypothetical protein compare
LU632_RS08000 nuoI -1.5 -2.5 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS24490 -1.5 -1.2 hypothetical protein compare
LU632_RS22305 -1.5 -2.5 MATE family efflux transporter DinF compare
LU632_RS25350 -1.5 -0.8 hypothetical protein compare
LU632_RS01020 purH -1.5 -1.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS23310 gltP -1.5 -0.6 glutamate/aspartate:proton symporter GltP compare
LU632_RS09795 aroA -1.5 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS07090 -1.5 -0.7 Rz1 family lipoprotein compare
LU632_RS03170 sctD -1.5 -4.5 type III secretion system inner membrane ring subunit SctD compare
LU632_RS26065 -1.5 -2.3 recombinase family protein compare
LU632_RS24270 gppA -1.5 -1.0 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
LU632_RS11615 -1.5 -2.7 2-hydroxyacid dehydrogenase compare
LU632_RS25495 -1.4 -1.1 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS23985 tatB -1.4 -2.0 Sec-independent protein translocase protein TatB compare
LU632_RS10375 -1.4 -0.7 IS5 family transposase compare
LU632_RS08035 -1.4 -4.8 glucan biosynthesis protein D compare
LU632_RS23195 -1.4 -1.4 amidohydrolase compare
LU632_RS24225 rffA -1.4 -7.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
LU632_RS26110 -1.4 -4.2 ParA family protein compare
LU632_RS25485 -1.4 -1.8 hypothetical protein compare
LU632_RS19605 -1.4 -3.4 argininosuccinate synthase compare
LU632_RS09585 -1.4 -2.6 hypothetical protein compare
LU632_RS24230 rffC -1.4 -3.1 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
LU632_RS00725 tssJ -1.4 -2.8 type VI secretion system lipoprotein TssJ compare
LU632_RS15200 ybcJ -1.4 -1.1 ribosome-associated protein YbcJ compare
LU632_RS05385 -1.4 -2.2 IS6 family transposase compare
LU632_RS10630 -1.4 -2.1 hypothetical protein compare
LU632_RS02070 hflC -1.4 -0.9 protease modulator HflC compare
LU632_RS13630 -1.4 -2.6 tyrosine-type recombinase/integrase compare
LU632_RS16490 arnC -1.3 -7.9 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
LU632_RS21260 kdsC -1.3 -2.2 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
LU632_RS04265 -1.3 -7.3 carbohydrate kinase compare
LU632_RS06555 -1.3 -1.1 IS110 family transposase compare
LU632_RS08060 -1.3 -0.7 phage protease compare
LU632_RS04255 -1.3 -3.0 YhcH/YjgK/YiaL family protein compare
LU632_RS08750 asmA -1.3 -5.8 outer membrane assembly protein AsmA compare
LU632_RS21700 fklB -1.3 -0.8 peptidylprolyl isomerase compare
LU632_RS06650 -1.3 -1.8 IS481 family transposase compare
LU632_RS21345 -1.3 -6.4 cell division protein ZapE compare
LU632_RS02590 gpmB -1.3 -2.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
LU632_RS07765 smrB -1.3 -2.3 endonuclease SmrB compare
LU632_RS12730 rluB -1.3 -5.0 23S rRNA pseudouridine(2605) synthase RluB compare
LU632_RS13340 -1.3 -1.2 hypothetical protein compare
LU632_RS16480 -1.3 -2.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS24235 wecC -1.3 -3.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
LU632_RS18525 -1.3 -2.8 hypothetical protein compare
LU632_RS00220 -1.3 -4.8 family 10 glycosylhydrolase compare
LU632_RS00535 -1.3 -2.5 acyl carrier protein compare


Specific Phenotypes

For 1 genes in this experiment

For in planta plant=Melon; plant sample=M4; plant location=P2 in Erwinia tracheiphila SCR3

For in planta plant=Melon; plant sample=M4; plant location=P2 across organisms