Experiment set5S143 for Erwinia amylovora T8

Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-6

Group:
Media:
Culturing: Erwinia_T8_ML2, at 28 (C)
By: Milo on 17-Aug-24

Specific Phenotypes

For 13 genes in this experiment

SEED Subsystems

Subsystem	#Specific
DNA repair, bacterial MutL-MutS system	2
DNA repair, UvrABC system	1
DNA repair, bacterial	1
DNA repair, bacterial UvrD and related helicases	1
Heat shock dnaK gene cluster extended	1
LOS core oligosaccharide biosynthesis	1
Methionine Salvage	1
Peptidoglycan Biosynthesis	1
Purine conversions	1
Type IV pilus	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Peptidoglycan biosynthesis
• Fructose and mannose metabolism
• Purine metabolism
• Methionine metabolism
• Lysine degradation
• N-Glycan biosynthesis
• O-Glycan biosynthesis
• High-mannose type N-glycan biosynthesis
• O-Mannosyl glycan biosynthesis
• Keratan sulfate biosynthesis
• Lipopolysaccharide biosynthesis
• Glycerolipid metabolism
• Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
• Sphingolipid metabolism
• Glycosphingolipid biosynthesis - lacto and neolacto series
• Glycosphingolipid biosynthesis - globo series
• Glycosphingolipid biosynthesis - ganglio series
• Biotin metabolism
• Carotenoid biosynthesis - General
• Zeatin biosynthesis
• Flavonoid biosynthesis
• Anthocyanin biosynthesis
• Flavone and flavonol biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
S-methyl-5-thio-α-D-ribose 1-phosphate degradation I	7	6	2
peptidoglycan maturation (meso-diaminopimelate containing)	12	4	3
L-methionine salvage cycle III	11	10	2
L-methionine salvage cycle II (plants)	11	9	2
L-methionine salvage cycle I (bacteria and plants)	12	11	2
peptidoglycan biosynthesis II (staphylococci)	17	12	2
peptidoglycan biosynthesis IV (Enterococcus faecium)	17	12	2
peptidoglycan biosynthesis V (β-lactam resistance)	17	11	2
peptidoglycan biosynthesis I (meso-diaminopimelate containing)	12	12	1
peptidoglycan biosynthesis III (mycobacteria)	15	11	1