Experiment set5IT093 for Pseudomonas simiae WCS417

Compare to:

Urea nitrogen source

200 most important genes:

  gene name fitness t score description  
PS417_04415 -6.9 -9.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25720 -6.6 -7.0 anthranilate synthase component II compare
PS417_27040 -6.4 -3.5 3-phosphoglycerate dehydrogenase compare
PS417_01635 -6.3 -6.0 nitrogen regulation protein NR(I) compare
PS417_18595 -6.1 -4.8 3-isopropylmalate dehydratase compare
PS417_01855 -6.0 -5.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_01565 -5.9 -4.0 imidazole glycerol phosphate synthase compare
PS417_23800 -5.8 -12.5 ketol-acid reductoisomerase compare
PS417_18560 -5.8 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_22690 -5.6 -3.9 phosphogluconate dehydratase compare
PS417_01640 -5.5 -5.1 histidine kinase compare
PS417_25725 -5.5 -18.6 anthranilate synthase component I compare
PS417_24745 -5.5 -3.6 gamma-glutamyl phosphate reductase compare
PS417_23545 -5.4 -4.0 gamma-glutamyl kinase compare
PS417_01575 -5.4 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26740 -5.3 -10.4 homoserine acetyltransferase compare
PS417_01850 -5.3 -10.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_28220 -5.2 -3.4 LysR family transcriptional regulator compare
PS417_25715 -5.1 -7.7 anthranilate phosphoribosyltransferase compare
PS417_03740 -5.1 -8.4 peptidylprolyl isomerase conserved
PS417_00180 -5.0 -3.5 tryptophan synthase subunit alpha compare
PS417_02510 -4.8 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02000 -4.8 -15.2 glutamate synthase compare
PS417_23810 -4.7 -13.5 acetolactate synthase 3 catalytic subunit compare
PS417_27795 -4.7 -1.7 orotate phosphoribosyltransferase compare
PS417_02005 -4.5 -10.4 glutamate synthase compare
PS417_04420 -4.5 -11.3 histidinol dehydrogenase compare
PS417_02785 -4.5 -9.4 Urease (EC 3.5.1.5) (from data) conserved
PS417_12855 -4.5 -6.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02710 -4.4 -8.3 Urease maturation and nickel insertion protein UreE (from data) conserved
PS417_18600 -4.4 -4.5 isopropylmalate isomerase compare
PS417_06200 -4.2 -8.5 protein-PII uridylyltransferase compare
PS417_23805 -4.1 -7.7 acetolactate synthase 3 regulatory subunit compare
PS417_23995 -4.1 -1.5 preprotein translocase subunit SecG compare
PS417_18530 -4.0 -6.4 O-succinylhomoserine sulfhydrylase compare
PS417_05595 -4.0 -8.4 ornithine carbamoyltransferase compare
PS417_02805 -3.9 -2.2 urease subunit gamma compare
PS417_27835 -3.9 -13.1 endoribonuclease compare
PS417_02695 -3.9 -2.8 protein hupE compare
PS417_02705 -3.9 -2.7 urease accessory protein UreF compare
PS417_12290 -3.8 -7.2 sulfite reductase compare
PS417_26745 -3.7 -5.5 methionine biosynthesis protein MetW compare
PS417_18585 -3.7 -6.3 3-isopropylmalate dehydrogenase compare
PS417_08125 -3.6 -2.3 prephenate dehydratase compare
PS417_27195 -3.5 -1.7 N-acetylglutamate synthase compare
PS417_26995 -3.5 -10.5 phosphoserine phosphatase compare
PS417_26890 -3.5 -7.4 dihydroxy-acid dehydratase compare
PS417_23110 -3.5 -7.7 2-isopropylmalate synthase compare
PS417_01580 -3.5 -1.6 imidazole glycerol phosphate synthase compare
PS417_16465 -3.4 -10.1 sirohydrochlorin ferrochelatase compare
PS417_05530 -3.4 -6.8 membrane protein conserved
PS417_02700 -3.3 -3.5 urease accessory protein UreG compare
PS417_00185 -3.0 -4.0 tryptophan synthase subunit beta compare
PS417_02415 -3.0 -4.3 phosphoserine phosphatase compare
PS417_01605 -2.9 -2.9 phosphoglycerate mutase compare
PS417_26730 -2.9 -1.5 pyrroline-5-carboxylate reductase compare
PS417_20125 -2.8 -4.3 phosphoribosylglycinamide formyltransferase compare
PS417_27010 -2.7 -9.5 threonine dehydratase compare
PS417_03925 -2.6 -8.8 nicotinate-nucleotide pyrophosphorylase compare
PS417_21035 -2.5 -10.7 multidrug transporter compare
PS417_22385 -2.5 -10.6 quinolinate synthase A compare
PS417_05140 -2.4 -3.0 dipicolinate synthase compare
PS417_23770 -2.4 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_25710 -2.3 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_20160 -2.2 -3.4 cysteine synthase compare
PS417_21705 -2.2 -5.5 arginine N-succinyltransferase compare
PS417_08245 -2.2 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_26985 -2.1 -4.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20985 -2.0 -3.4 porin compare
PS417_26695 -2.0 -1.7 uracil phosphoribosyltransferase compare
PS417_24155 -2.0 -2.7 ATP-binding protein compare
PS417_12555 -2.0 -6.3 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_18690 -1.9 -4.7 aromatic amino acid aminotransferase compare
PS417_21980 -1.8 -9.9 permease DsdX compare
PS417_19835 -1.8 -2.2 flagellar biosynthesis protein FliS compare
PS417_26005 -1.8 -8.5 biotin synthase compare
PS417_21655 -1.7 -2.2 aspartate kinase compare
PS417_20610 -1.7 -1.8 hypothetical protein compare
PS417_08430 -1.6 -5.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_08220 -1.6 -1.3 epimerase compare
PS417_27435 -1.6 -6.9 polyphosphate kinase compare
PS417_21125 -1.5 -5.7 phosphoadenosine phosphosulfate reductase compare
PS417_01560 -1.5 -2.0 imidazoleglycerol-phosphate dehydratase compare
PS417_09725 -1.5 -7.5 transporter compare
PS417_08225 -1.5 -6.2 acetolactate synthase compare
PS417_21690 -1.5 -6.8 N-succinylarginine dihydrolase compare
PS417_12565 -1.5 -2.8 2-dehydro-3-deoxygluconokinase compare
PS417_06375 -1.5 -1.4 deoxycytidine triphosphate deaminase compare
PS417_02795 -1.4 -3.6 acetyltransferase compare
PS417_00285 -1.4 -7.8 carbonate dehydratase conserved
PS417_07115 -1.4 -10.1 L-aspartate oxidase compare
PS417_27940 -1.3 -1.7 type VI secretion protein compare
PS417_08195 -1.3 -6.1 hypothetical protein compare
PS417_07170 -1.3 -2.5 hypothetical protein compare
PS417_06895 -1.3 -2.8 DNA-binding protein compare
PS417_07595 -1.2 -3.9 PasA protein compare
PS417_25985 -1.2 -2.2 dethiobiotin synthetase compare
PS417_12560 -1.2 -6.5 MFS transporter compare
PS417_16005 -1.2 -2.9 ATPase compare
PS417_15285 -1.2 -1.3 type VI secretion protein compare
PS417_05165 -1.2 -1.6 cytosol aminopeptidase compare
PS417_26000 -1.2 -6.4 8-amino-7-oxononanoate synthase compare
PS417_14940 -1.2 -2.0 LysR family transcriptional regulator compare
PS417_08945 -1.2 -7.0 heat shock protein 90 compare
PS417_05540 -1.1 -3.0 histidine kinase compare
PS417_18590 -1.1 -2.8 SAM-dependent methyltransferase compare
PS417_26990 -1.1 -1.7 RNA pyrophosphohydrolase compare
PS417_20665 -1.1 -4.4 hypothetical protein compare
PS417_11485 -1.1 -1.9 AraC family transcriptional regulator compare
PS417_20635 -1.1 -1.0 ABC transporter ATP-binding protein compare
PS417_03310 -1.1 -4.8 carbonate dehydratase compare
PS417_16520 -1.1 -2.1 cold-shock protein compare
PS417_26540 -1.1 -6.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_00295 -1.1 -4.3 hypothetical protein compare
PS417_08155 -1.1 -1.7 integration host factor subunit beta compare
PS417_12570 -1.1 -4.9 AP endonuclease compare
PS417_07470 -1.0 -1.5 hypothetical protein compare
PS417_24835 -1.0 -3.5 hypothetical protein compare
PS417_27035 -1.0 -3.9 FAD-linked oxidase compare
PS417_16515 -1.0 -2.6 Clp protease ClpS compare
PS417_23390 -1.0 -5.1 ubiquinol oxidase subunit II compare
PS417_21015 -1.0 -2.8 EstX protein compare
PS417_01915 -1.0 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_13735 -0.9 -1.5 hypothetical protein compare
PS417_14515 -0.9 -1.8 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_25390 -0.9 -3.8 MFS transporter compare
PS417_07165 -0.9 -3.8 dihydrodipicolinate synthase compare
PS417_23385 -0.9 -5.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_27875 -0.9 -5.4 histidine kinase compare
PS417_01570 -0.9 -0.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_03260 -0.9 -1.7 5S ribosomal RNA compare
PS417_06645 -0.9 -5.0 RNA polymerase-associated protein RapA compare
PS417_08135 -0.9 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_16555 -0.9 -1.6 cupin compare
PS417_14425 -0.9 -2.3 alkylhydroperoxidase compare
PS417_08730 -0.9 -1.8 cytochrome C compare
PS417_13075 -0.9 -1.4 hypothetical protein compare
PS417_08205 -0.9 -3.1 acetyltransferase compare
PS417_23095 -0.8 -1.0 exodeoxyribonuclease compare
PS417_00065 -0.8 -1.5 3-methyladenine DNA glycosylase compare
PS417_26850 -0.8 -0.8 twin-arginine translocation pathway signal protein compare
PS417_02485 -0.8 -4.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_06540 -0.8 -1.0 membrane protein compare
PS417_09505 -0.8 -2.8 hypothetical protein compare
PS417_28050 -0.8 -2.0 hypothetical protein compare
PS417_22145 -0.8 -4.2 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) compare
PS417_26305 -0.8 -2.1 AraC family transcriptional regulator compare
PS417_04410 -0.8 -1.1 hypothetical protein compare
PS417_02815 -0.8 -2.9 urea ABC transporter ATP-binding protein compare
PS417_18455 -0.8 -1.7 hypothetical protein compare
PS417_18445 -0.8 -2.0 glycerol-3-phosphatase compare
PS417_23370 -0.8 -2.7 protoheme IX farnesyltransferase compare
PS417_22520 -0.8 -1.5 histidine kinase compare
PS417_22570 -0.8 -0.8 H-NS histone compare
PS417_02360 -0.8 -2.7 nitrate reductase compare
PS417_13165 -0.8 -1.1 peroxidase compare
PS417_02575 -0.8 -2.2 membrane protein compare
PS417_08200 -0.8 -1.8 hypothetical protein compare
PS417_09210 -0.7 -1.3 TetR family transcriptional regulator compare
PS417_26605 -0.7 -1.0 malonate decarboxylase subunit beta compare
PS417_10015 -0.7 -1.1 hypothetical protein compare
PS417_19840 -0.7 -4.6 flagellar cap protein FliD compare
PS417_15935 -0.7 -2.3 Rrf2 family transcriptional regulator compare
PS417_06680 -0.7 -4.7 nuclease PIN compare
PS417_02725 -0.7 -2.2 hypothetical protein compare
PS417_02055 -0.7 -3.0 methyltransferase compare
PS417_04875 -0.7 -0.9 molybdenum cofactor biosynthesis protein MoaE compare
PS417_18370 -0.7 -1.5 hypothetical protein compare
PS417_21595 -0.7 -1.9 flagellar biosynthesis protein FlgN compare
PS417_02560 -0.7 -1.0 23S rRNA methyltransferase compare
PS417_04650 -0.7 -0.7 D-alanine--D-alanine ligase compare
PS417_19075 -0.7 -3.4 ABC transporter ATP-binding protein compare
PS417_16020 -0.7 -2.3 LysR family transcriptional regulator compare
PS417_27615 -0.7 -2.7 ammonia channel protein compare
PS417_26145 -0.7 -1.7 hypothetical protein compare
PS417_25225 -0.7 -1.8 MFS transporter compare
PS417_26120 -0.7 -1.5 hypothetical protein compare
PS417_11060 -0.7 -2.3 transporter compare
PS417_01590 -0.7 -1.5 polysaccharide deacetylase compare
PS417_16045 -0.7 -1.0 acyl-CoA dehydrogenase compare
PS417_06245 -0.7 -1.3 zinc metallopeptidase RseP compare
PS417_17610 -0.7 -1.1 AsnC family transcriptional regulator compare
PS417_08230 -0.7 -0.8 lipopolysaccharide biosynthesis protein RfbH compare
PS417_16100 -0.7 -2.8 antibiotic biosynthesis monooxygenase compare
PS417_14805 -0.7 -1.4 AraC family transcriptional regulator compare
PS417_04860 -0.7 -3.2 ATPase compare
PS417_01270 -0.7 -1.2 iron ABC transporter substrate-binding protein compare
PS417_14725 -0.7 -3.5 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
PS417_21030 -0.7 -3.2 GntR family transcriptional regulator compare
PS417_17455 -0.7 -2.7 cytochrome C compare
PS417_05905 -0.7 -1.4 hypothetical protein compare
PS417_09325 -0.7 -2.5 peptidase S41 compare
PS417_18760 -0.6 -2.6 hypothetical protein compare
PS417_02615 -0.6 -3.0 transglutaminase compare
PS417_26945 -0.6 -2.8 sulfate ABC transporter ATP-binding protein compare
PS417_02895 -0.6 -0.8 precorrin-6Y C5,15-methyltransferase compare
PS417_00505 -0.6 -2.3 peptidase M16 compare
PS417_05820 -0.6 -1.2 recombinase RecX compare
PS417_03560 -0.6 -1.0 GTP-binding protein compare
PS417_23375 -0.6 -1.2 cytochrome C oxidase compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source Urea in Pseudomonas simiae WCS417

For nitrogen source Urea across organisms